Rmu_sc0016242.1_g000001

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016242.1
OG0001515
Physical Location & Seq
Forward (+)
1 .. 487
487 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016242.1_g000001.1.cds

Sequence Viewer

Length: 487 bp
ggagtggctgccggagcgtttcgaggaacgaatgagggagacgaagcaggggttattggtgcacaactgggcatcgcagctggagattctgtcgcacgaggcgacgcgagcgtttgtgagtcactgcgggtggaactcggtggtggagagcttgagcagaggggtgccgatcatcgggtggccgctggcggcggagcaggcgtataactcaaagatgttggtggaggagatgggcgtgagtgtggagctgacgaggggtgtgaagagtaatgtggaggcggaggaggtgaggagagtgattgagttggtggtggacgagagtggggaaggtggtgagatgaggagaagagctggtgagattatggagaagataagaggagctgtaggggaggatggtgaagcaaaggggtcttcccttaaagctatagatgattttgtttctgaacttcattcacagggagaaggaagaggatccaaaattcagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

161

Amino Acids

17.89

Weight (kDa)

5.05

Isoelectric Point (pI)

42.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 164
AccII CGCG 1 cut(s) 107
AciI CCGC 5 cut(s) 127, 183, 189, 192, 279
AclWI GGATC 2 cut(s) 466, 479
AcoI YGGCCR 1 cut(s) 180
AcsI RAATTY 1 cut(s) 478
AfiI CCNNNNNNNGG 1 cut(s) 174
AluBI AGCT 6 cut(s) 80, 151, 248, 351, 381, 423
AluI AGCT 6 cut(s) 80, 151, 248, 351, 381, 423
Alw21I GWGCWC 1 cut(s) 64
Alw26I GTCTC 1 cut(s) 33
Alw44I GTGCAC 1 cut(s) 60
AlwI GGATC 2 cut(s) 466, 479
AoxI GGCC 1 cut(s) 180
ApaLI GTGCAC 1 cut(s) 60
ApeKI GCWGC 2 cut(s) 8, 77
ApoI RAATTY 1 cut(s) 478
AsuHPI GGTGA 4 cut(s) 299, 345, 366, 408
BaeGI GKGCMC 1 cut(s) 64
BamHI GGATCC 1 cut(s) 471
BanI GGYRCC 1 cut(s) 164
BauI CACGAG 1 cut(s) 96
BbsI GAAGAC 1 cut(s) 403
Bbv12I GWGCWC 1 cut(s) 64
BbvI GCAGC 1 cut(s) 89
BccI CCATC 2 cut(s) 224, 387
BcoDI GTCTC 1 cut(s) 33
BfmI CTRYAG 2 cut(s) 382, 424
BisI GCNGC 4 cut(s) 9, 78, 183, 190
BlsI GCNGC 4 cut(s) 10, 79, 184, 191
BmiI GGNNCC 2 cut(s) 166, 473
BmrI ACTGGG 1 cut(s) 77
BmsI GCATC 1 cut(s) 81
BmuI ACTGGG 1 cut(s) 77
BpiI GAAGAC 1 cut(s) 403
BpmI CTGGAG 1 cut(s) 102
BpuEI CTTGAG 1 cut(s) 173
BsaXI ACNNNNNCTCC 4 cut(s) 75, 105, 186, 216
Bsc4I CCNNNNNNNGG 1 cut(s) 174
Bse1I ACTGG 1 cut(s) 72
BseGI GGATG 1 cut(s) 398
BseLI CCNNNNNNNGG 1 cut(s) 174
BseNI ACTGG 1 cut(s) 72
BseRI GAGGAG 5 cut(s) 240, 297, 305, 356, 391
BseSI GKGCMC 1 cut(s) 64
BseXI GCAGC 1 cut(s) 89
Bsh1236I CGCG 1 cut(s) 107
BshFI GGCC 1 cut(s) 182
BshNI GGYRCC 1 cut(s) 164
BsiHKAI GWGCWC 1 cut(s) 64
BsiSI CCGG 1 cut(s) 12
BslI CCNNNNNNNGG 1 cut(s) 174
BsmAI GTCTC 1 cut(s) 33
BsmBI CGTCTC 1 cut(s) 33
BsnI GGCC 1 cut(s) 182
Bsp1286I GDGCHC 1 cut(s) 64
Bsp143I GATC 2 cut(s) 169, 471
BspACI CCGC 5 cut(s) 127, 183, 189, 192, 279
BspANI GGCC 1 cut(s) 182
BspFNI CGCG 1 cut(s) 107
BspLI GGNNCC 2 cut(s) 166, 473
BspPI GGATC 2 cut(s) 466, 479
BspQI GCTCTTC 1 cut(s) 341
BspT107I GGYRCC 1 cut(s) 164
BsrI ACTGG 1 cut(s) 72
BssMI GATC 2 cut(s) 169, 471
BssSI CACGAG 1 cut(s) 96
Bst2BI CACGAG 1 cut(s) 96
Bst6I CTCTTC 3 cut(s) 258, 341, 461
BstC8I GCNNGC 3 cut(s) 109, 187, 199
BstF5I GGATG 1 cut(s) 398
BstFNI CGCG 1 cut(s) 107
BstKTI GATC 2 cut(s) 172, 474
BstMAI GTCTC 1 cut(s) 33
BstMBI GATC 2 cut(s) 169, 471
BstMWI GCNNNNNNNGC 3 cut(s) 14, 108, 198
BstSFI CTRYAG 2 cut(s) 382, 424
BstSLI GKGCMC 1 cut(s) 64
BstUI CGCG 1 cut(s) 107
BstV1I GCAGC 1 cut(s) 89
BstV2I GAAGAC 1 cut(s) 403
BstX2I RGATCY 1 cut(s) 471
BstYI RGATCY 1 cut(s) 471
BsuRI GGCC 1 cut(s) 182
BtgZI GCGATG 1 cut(s) 58
BtsCI GGATG 1 cut(s) 398
BtsI GCAGTG 1 cut(s) 122
BtsIMutI CAGTG 1 cut(s) 122
Cac8I GCNNGC 3 cut(s) 109, 187, 199
CseI GACGC 1 cut(s) 113
CviJI RGCY 8 cut(s) 8, 80, 151, 182, 248, 351, 381, 423
CviKI_1 RGCY 8 cut(s) 8, 80, 151, 182, 248, 351, 381, 423
DpnI GATC 2 cut(s) 171, 473
DpnII GATC 2 cut(s) 169, 471
EaeI YGGCCR 1 cut(s) 180
Eam1104I CTCTTC 3 cut(s) 258, 341, 461
EarI CTCTTC 3 cut(s) 258, 341, 461
EciI GGCGGA 2 cut(s) 207, 294
Esp3I CGTCTC 1 cut(s) 33
FaiI YATR 3 cut(s) 205, 363, 426
FauI CCCGC 1 cut(s) 120
Fnu4HI GCNGC 4 cut(s) 9, 78, 183, 190
FokI GGATG 1 cut(s) 405
Fsp4HI GCNGC 4 cut(s) 9, 78, 183, 190
GluI GCNGC 4 cut(s) 9, 78, 183, 190
GsuI CTGGAG 1 cut(s) 102
HaeIII GGCC 1 cut(s) 182
HapII CCGG 1 cut(s) 12
HgaI GACGC 1 cut(s) 113
HinfI GANTC 2 cut(s) 86, 119
HpaII CCGG 1 cut(s) 12
HphI GGTGA 4 cut(s) 299, 345, 366, 408
Hpy166II GTNNAC 2 cut(s) 62, 314
Hpy188I TCNGA 1 cut(s) 443
Hpy8I GTNNAC 2 cut(s) 62, 314
Hpy99I CGWCG 1 cut(s) 107
HpyAV CCTTC 2 cut(s) 321, 456
HpyCH4V TGCA 1 cut(s) 62
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 108, 198
Kzo9I GATC 2 cut(s) 169, 471
LguI GCTCTTC 1 cut(s) 341
LmnI GCTCC 4 cut(s) 14, 194, 245, 378
LpnPI CCDG 8 cut(s) 25, 33, 53, 66, 171, 183, 337, 441
Lsp1109I GCAGC 1 cut(s) 89
LweI GCATC 1 cut(s) 81
MaeIII GTNAC 1 cut(s) 120
MalI GATC 2 cut(s) 171, 473
MboI GATC 2 cut(s) 169, 471
MboII GAAGA 5 cut(s) 275, 358, 380, 403, 478
MflI RGATCY 1 cut(s) 471
MhlI GDGCHC 1 cut(s) 64
MluCI AATT 1 cut(s) 478
MlyI GAGTC 1 cut(s) 128
MseI TTAA 1 cut(s) 418
MspA1I CMGCKG 2 cut(s) 80, 185
MspI CCGG 1 cut(s) 12
MvnI CGCG 1 cut(s) 107
MwoI GCNNNNNNNGC 3 cut(s) 14, 108, 198
NdeII GATC 2 cut(s) 169, 471
NlaIV GGNNCC 2 cut(s) 166, 473
NmuCI GTSAC 1 cut(s) 120
PciSI GCTCTTC 1 cut(s) 341
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PfeI GAWTC 1 cut(s) 86
PkrI GCNGC 4 cut(s) 10, 79, 184, 191
PleI GAGTC 1 cut(s) 127
PpsI GAGTC 1 cut(s) 127
PspN4I GGNNCC 2 cut(s) 166, 473
PsuI RGATCY 1 cut(s) 471
PvuII CAGCTG 1 cut(s) 80
SapI GCTCTTC 1 cut(s) 341
SaqAI TTAA 1 cut(s) 418
SatI GCNGC 4 cut(s) 9, 78, 183, 190
Sau3AI GATC 2 cut(s) 169, 471
SchI GAGTC 1 cut(s) 128
SduI GDGCHC 1 cut(s) 64
SetI ASST 8 cut(s) 82, 153, 250, 289, 332, 353, 383, 425
SfaNI GCATC 1 cut(s) 81
SfcI CTRYAG 2 cut(s) 382, 424
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 1 cut(s) 478
SsiI CCGC 5 cut(s) 127, 183, 189, 192, 279
TaqI TCGA 1 cut(s) 22
TasI AATT 1 cut(s) 478
TauI GCSGC 2 cut(s) 185, 192
TfiI GAWTC 1 cut(s) 86
Tru1I TTAA 1 cut(s) 418
Tru9I TTAA 1 cut(s) 418
TscAI CASTG 1 cut(s) 129
TseFI GTSAC 1 cut(s) 120
TseI GCWGC 2 cut(s) 8, 77
Tsp45I GTSAC 1 cut(s) 120
TspDTI ATGAA 1 cut(s) 438
TspRI CASTG 1 cut(s) 129
VneI GTGCAC 1 cut(s) 60
XapI RAATTY 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.