Rorug04G0090100

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001515
Physical Location & Seq
Forward (+)
13954280 .. 13954546
267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0090100.1

Sequence Viewer

Length: 267 bp
ATGACGGATTTCCAATCTATTGAGATCCGACATATTTATAGGGAAGCAAATGGTGTAGCAGATCGTCTTGCTCACCTTGCTAGCTTGTTTGCACTTGATGATGTTTGGTTAGAGGAGACTCATGCTATTATTCAGGACGTTCTCTACGAGGATTATTGTAATTATTCTAATGTAGCGCGGGGTTCGGGTTTTATGTCCCCCCCGACGCAAAGTCCTACTATTAATATAATAAATGGAACCGGGCGTGGAGCTAAGCCTCCCAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

88

Amino Acids

9.77

Weight (kDa)

4.87

Isoelectric Point (pI)

53.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 178
AciI CCGC 1 cut(s) 178
AclWI GGATC 1 cut(s) 19
AhdI GACNNNNNGTC 1 cut(s) 210
AluBI AGCT 3 cut(s) 84, 251, 264
AluI AGCT 3 cut(s) 84, 251, 264
Alw26I GTCTC 1 cut(s) 110
AlwI GGATC 1 cut(s) 19
AseI ATTAAT 1 cut(s) 222
AspLEI GCGC 1 cut(s) 178
AsuC2I CCSGG 1 cut(s) 241
AsuHPI GGTGA 1 cut(s) 65
AsuNHI GCTAGC 1 cut(s) 80
BcnI CCSGG 1 cut(s) 241
BcoDI GTCTC 1 cut(s) 110
BfaI CTAG 2 cut(s) 81, 265
BlpI GCTNAGC 1 cut(s) 252
Bme1390I CCNGG 1 cut(s) 241
BmeRI GACNNNNNGTC 1 cut(s) 210
BmiI GGNNCC 1 cut(s) 238
BmrFI CCNGG 1 cut(s) 241
BmtI GCTAGC 1 cut(s) 84
Bpu1102I GCTNAGC 1 cut(s) 252
BpuMI CCSGG 1 cut(s) 241
BseRI GAGGAG 1 cut(s) 128
BseYI CCCAGC 1 cut(s) 260
Bsh1236I CGCG 1 cut(s) 178
BsiSI CCGG 1 cut(s) 240
BslFI GGGAC 1 cut(s) 181
BsmAI GTCTC 1 cut(s) 110
BsmFI GGGAC 1 cut(s) 181
Bsp143I GATC 2 cut(s) 24, 61
Bsp1720I GCTNAGC 1 cut(s) 252
BspACI CCGC 1 cut(s) 178
BspFNI CGCG 1 cut(s) 178
BspLI GGNNCC 1 cut(s) 238
BspOI GCTAGC 1 cut(s) 84
BspPI GGATC 1 cut(s) 19
BssMI GATC 2 cut(s) 24, 61
BstC8I GCNNGC 1 cut(s) 82
BstDEI CTNAG 1 cut(s) 252
BstFNI CGCG 1 cut(s) 178
BstHHI GCGC 1 cut(s) 178
BstKTI GATC 2 cut(s) 27, 64
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 2 cut(s) 24, 61
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstSCI CCNGG 1 cut(s) 239
BstUI CGCG 1 cut(s) 178
BstX2I RGATCY 1 cut(s) 24
BstYI RGATCY 1 cut(s) 24
Cac8I GCNNGC 1 cut(s) 82
CfoI GCGC 1 cut(s) 178
CseI GACGC 1 cut(s) 214
CviAII CATG 1 cut(s) 122
CviJI RGCY 4 cut(s) 84, 251, 256, 264
CviKI_1 RGCY 4 cut(s) 84, 251, 256, 264
DdeI CTNAG 1 cut(s) 252
DpnI GATC 2 cut(s) 26, 63
DpnII GATC 2 cut(s) 24, 61
DriI GACNNNNNGTC 1 cut(s) 210
Eam1105I GACNNNNNGTC 1 cut(s) 210
FaeI CATG 1 cut(s) 125
FaiI YATR 5 cut(s) 33, 39, 123, 194, 227
FaqI GGGAC 1 cut(s) 181
FatI CATG 1 cut(s) 121
FauI CCCGC 1 cut(s) 171
FspBI CTAG 2 cut(s) 81, 265
GlaI GCGC 1 cut(s) 177
GsaI CCCAGC 1 cut(s) 264
HapII CCGG 1 cut(s) 240
HgaI GACGC 1 cut(s) 214
HhaI GCGC 1 cut(s) 178
Hin1II CATG 1 cut(s) 125
Hin6I GCGC 1 cut(s) 176
HinP1I GCGC 1 cut(s) 176
HinfI GANTC 1 cut(s) 118
HpaII CCGG 1 cut(s) 240
HphI GGTGA 1 cut(s) 65
Hpy188I TCNGA 1 cut(s) 29
Hpy188III TCNNGA 1 cut(s) 134
Hpy99I CGWCG 1 cut(s) 208
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 1 cut(s) 92
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpyF3I CTNAG 1 cut(s) 252
HpySE526I ACGT 1 cut(s) 138
Hsp92II CATG 1 cut(s) 125
HspAI GCGC 1 cut(s) 176
Kzo9I GATC 2 cut(s) 24, 61
LmnI GCTCC 1 cut(s) 248
LpnPI CCDG 2 cut(s) 119, 253
MaeI CTAG 2 cut(s) 81, 265
MaeII ACGT 1 cut(s) 138
MalI GATC 2 cut(s) 26, 63
MboI GATC 2 cut(s) 24, 61
MflI RGATCY 1 cut(s) 24
MluCI AATT 1 cut(s) 160
MlyI GAGTC 1 cut(s) 112
MmeI TCCRAC 1 cut(s) 52
MnlI CCTC 3 cut(s) 106, 142, 267
MseI TTAA 1 cut(s) 222
MspI CCGG 1 cut(s) 240
MspR9I CCNGG 1 cut(s) 241
MvnI CGCG 1 cut(s) 178
MwoI GCNNNNNNNGC 1 cut(s) 77
NciI CCSGG 1 cut(s) 241
NdeII GATC 2 cut(s) 24, 61
NheI GCTAGC 1 cut(s) 80
NlaIII CATG 1 cut(s) 125
NlaIV GGNNCC 1 cut(s) 238
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PleI GAGTC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 112
PshBI ATTAAT 1 cut(s) 222
PspFI CCCAGC 1 cut(s) 260
PspN4I GGNNCC 1 cut(s) 238
PsuI RGATCY 1 cut(s) 24
SaqAI TTAA 1 cut(s) 222
Sau3AI GATC 2 cut(s) 24, 61
SchI GAGTC 1 cut(s) 112
ScrFI CCNGG 1 cut(s) 241
SetI ASST 5 cut(s) 78, 86, 141, 253, 266
Sse9I AATT 1 cut(s) 160
SsiI CCGC 1 cut(s) 178
SspMI CTAG 2 cut(s) 81, 265
StyD4I CCNGG 1 cut(s) 239
TaiI ACGT 1 cut(s) 141
TasI AATT 1 cut(s) 160
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TspGWI ACGGA 1 cut(s) 20
VspI ATTAAT 1 cut(s) 222
XspI CTAG 2 cut(s) 81, 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.