Rmu_sc0012282.1_g000001

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012282.1
OG0001515
Physical Location & Seq
Forward (+)
1 .. 2563
2563 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012282.1_g000001.1.cds

Sequence Viewer

Length: 1287 bp
acgtcgctttcaccaccggtggggcttacggcacggcggcgtacgtgtccatctggcaacatctcccgcatcgtagtgtgtttgacaccgtctcccggaacggtgtcgtttgacaccgtctcacttgcatccgtttttgagagccgccgacggtacggattcttggtcgagatatttccagctgcagatctcgctctcgatgaaaacacgatcagtgcctgccagatgatagaattggccaaaggattggaaaaaagcgggaagccttttgtctgggtcataaggccgccggtgggtcacgacttgaagggcgagttccgaccggagtggctgccggagggtttcgaggagcgaatgagggagacgaagcagggattattggtgcacaactgggcctcgcagctggagattctgtcgcacgaggcgacgcgagcgtttgtgagtcactgcgggtggaactcggtggtggagagcttgagcagaggggtgccgatcatcgggtggccgctggcggcggagcaggcgtataactcaaagatgttggtggaggagatgggtgtgagtgtggagctgacgaggggtgtgaagagtaatgtggaggcggaggaggtgaggagagtgattgagttggtggtggacgagagtggggaaggtggtgagatgaggagaagagctggtgagattatggagaagataagaggagctgtaggggaggatggtgaagcaaagggccatagctcttttaaaaactccaaaattcgatcaccacatattaaatcgctgcaagccttcttgggtgtagcttctacttcctttgggctagaaaagccctcaaagaactcgagctatagtggccggagctgggagaaccaaggccggcgatttgaggtgatttgtagcaccaccgtgcaatttctcggacttgtagcgtcgtccacggtgcttcccacgacgaatcaccaccacagacttgtagaggggactgaggagagcaggattccctttggaatcgcgccgattggtggccggacgcctttgccgatatcgagttccgttgcttcgtcggatgtggtatctacggaagtggtgatggttgttgtgaaggtggaagtggtggtggatacaaccgtggaagtggaggtggaggcagcggaggcgatggctacagaggtggtggctgggaccgtggatctgctggcgggagctggagatctgttgctttctagatttgttgctctgtcaaaccttccagccggacactcttctcaacacctaagtcatatctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

428

Amino Acids

46.29

Weight (kDa)

5.81

Isoelectric Point (pI)

51.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 487
AccII CGCG 2 cut(s) 430, 1013
AclWI GGATC 1 cut(s) 1197
AcoI YGGCCR 4 cut(s) 237, 503, 853, 1024
AcsI RAATTY 1 cut(s) 756
AcyI GRCGYC 1 cut(s) 1031
AfaI GTAC 2 cut(s) 43, 155
AfiI CCNNNNNNNGG 6 cut(s) 20, 95, 293, 497, 862, 1022
AflIII ACRYGT 1 cut(s) 44
AgeI ACCGGT 1 cut(s) 16
AgsI TTSAA 1 cut(s) 307
AleI CACNNNNGTG 1 cut(s) 905
Alw21I GWGCWC 1 cut(s) 387
Alw26I GTCTC 3 cut(s) 96, 124, 356
Alw44I GTGCAC 1 cut(s) 383
AlwI GGATC 1 cut(s) 1197
AlwNI CAGNNNCTG 1 cut(s) 219
Ama87I CYCGRG 1 cut(s) 841
AoxI GGCC 8 cut(s) 237, 284, 393, 503, 730, 853, 874, 1024
ApaLI GTGCAC 1 cut(s) 383
ApeKI GCWGC 5 cut(s) 182, 331, 400, 781, 1148
ApoI RAATTY 1 cut(s) 756
AsiGI ACCGGT 1 cut(s) 16
AspLEI GCGC 1 cut(s) 1015
AspS9I GGNCC 3 cut(s) 393, 730, 1182
AsuC2I CCSGG 1 cut(s) 96
AsuHPI GGTGA 9 cut(s) 3, 622, 668, 689, 731, 756, 901, 950, 1099
AvaI CYCGRG 1 cut(s) 841
AvaII GGWCC 1 cut(s) 1182
BaeGI GKGCMC 1 cut(s) 387
BaeI ACNNNNGTAYC 2 cut(s) 1113, 1146
BalI TGGCCA 1 cut(s) 239
BanI GGYRCC 1 cut(s) 487
BauI CACGAG 1 cut(s) 419
Bbv12I GWGCWC 1 cut(s) 387
BbvI GCAGC 5 cut(s) 169, 318, 412, 768, 1160
BccI CCATC 5 cut(s) 58, 547, 710, 1084, 1153
BceAI ACGGC 2 cut(s) 45, 50
BciVI GTATCC 1 cut(s) 1114
BcnI CCSGG 1 cut(s) 96
BcoDI GTCTC 3 cut(s) 96, 124, 356
BfaI CTAG 3 cut(s) 821, 1224, 1285
BfmI CTRYAG 4 cut(s) 183, 705, 847, 1164
BfuI GTATCC 1 cut(s) 1114
BglII AGATCT 2 cut(s) 187, 1210
Bme1390I CCNGG 1 cut(s) 96
Bme18I GGWCC 1 cut(s) 1182
BmeT110I CYCGRG 1 cut(s) 841
BmgT120I GGNCC 3 cut(s) 393, 730, 1182
BmiI GGNNCC 2 cut(s) 489, 1183
BmrFI CCNGG 1 cut(s) 96
BmrI ACTGGG 1 cut(s) 400
BmsI GCATC 2 cut(s) 78, 137
BmuI ACTGGG 1 cut(s) 400
BpmI CTGGAG 2 cut(s) 425, 1227
BpuEI CTTGAG 1 cut(s) 496
BpuMI CCSGG 1 cut(s) 96
BsaAI YACGTR 1 cut(s) 45
BsaHI GRCGYC 1 cut(s) 1031
BsaJI CCNNGG 4 cut(s) 871, 936, 1128, 1185
BsaWI WCCGGW 2 cut(s) 16, 322
BsaXI ACNNNNNCTCC 6 cut(s) 76, 106, 398, 428, 509, 539
Bsc4I CCNNNNNNNGG 6 cut(s) 20, 95, 293, 497, 862, 1022
Bse118I RCCGGY 3 cut(s) 16, 289, 876
Bse1I ACTGG 1 cut(s) 395
BseDI CCNNGG 4 cut(s) 871, 936, 1128, 1185
BseGI GGATG 3 cut(s) 128, 721, 1072
BseLI CCNNNNNNNGG 6 cut(s) 20, 95, 293, 497, 862, 1022
BseMII CTCAG 1 cut(s) 975
BseNI ACTGG 1 cut(s) 395
BseRI GAGGAG 7 cut(s) 362, 563, 620, 628, 679, 714, 1001
BseSI GKGCMC 1 cut(s) 387
BseXI GCAGC 5 cut(s) 169, 318, 412, 768, 1160
BseYI CCCAGC 2 cut(s) 861, 1178
Bsh1236I CGCG 2 cut(s) 430, 1013
Bsh1285I CGRYCG 1 cut(s) 323
BshFI GGCC 8 cut(s) 239, 286, 395, 505, 732, 855, 876, 1026
BshNI GGYRCC 1 cut(s) 487
BshTI ACCGGT 1 cut(s) 16
BsiEI CGRYCG 1 cut(s) 323
BsiHKAI GWGCWC 1 cut(s) 387
BsiHKCI CYCGRG 1 cut(s) 841
BsiSI CCGG 9 cut(s) 17, 96, 290, 323, 335, 856, 877, 1027, 1254
BsiWI CGTACG 1 cut(s) 41
BslFI GGGAC 2 cut(s) 994, 1195
BslI CCNNNNNNNGG 6 cut(s) 20, 95, 293, 497, 862, 1022
BsmAI GTCTC 3 cut(s) 96, 124, 356
BsmBI CGTCTC 3 cut(s) 96, 124, 356
BsmFI GGGAC 2 cut(s) 994, 1195
BsnI GGCC 8 cut(s) 239, 286, 395, 505, 732, 855, 876, 1026
BsoBI CYCGRG 1 cut(s) 841
Bsp1286I GDGCHC 1 cut(s) 387
Bsp143I GATC 6 cut(s) 187, 210, 492, 761, 1189, 1210
BspANI GGCC 8 cut(s) 239, 286, 395, 505, 732, 855, 876, 1026
BspCNI CTCAG 1 cut(s) 976
BspFNI CGCG 2 cut(s) 430, 1013
BspLI GGNNCC 2 cut(s) 489, 1183
BspMAI CTGCAG 1 cut(s) 187
BspPI GGATC 1 cut(s) 1197
BspQI GCTCTTC 1 cut(s) 664
BspT107I GGYRCC 1 cut(s) 487
BsrFI RCCGGY 3 cut(s) 16, 289, 876
BsrI ACTGG 1 cut(s) 395
BssAI RCCGGY 3 cut(s) 16, 289, 876
BssECI CCNNGG 4 cut(s) 871, 936, 1128, 1185
BssMI GATC 6 cut(s) 187, 210, 492, 761, 1189, 1210
BssNI GRCGYC 1 cut(s) 1031
BssSI CACGAG 1 cut(s) 419
BssT1I CCWWGG 1 cut(s) 871
Bst2BI CACGAG 1 cut(s) 419
Bst4CI ACNGT 8 cut(s) 90, 103, 118, 153, 907, 940, 1129, 1186
Bst6I CTCTTC 3 cut(s) 581, 664, 1267
BstACI GRCGYC 1 cut(s) 1031
BstBAI YACGTR 1 cut(s) 45
BstC8I GCNNGC 7 cut(s) 220, 432, 510, 522, 786, 878, 1197
BstDEI CTNAG 2 cut(s) 984, 1274
BstDSI CCRYGG 3 cut(s) 936, 1128, 1185
BstF5I GGATG 3 cut(s) 128, 721, 1072
BstFNI CGCG 2 cut(s) 430, 1013
BstHHI GCGC 1 cut(s) 1015
BstKTI GATC 6 cut(s) 190, 213, 495, 764, 1192, 1213
BstMAI GTCTC 3 cut(s) 96, 124, 356
BstMBI GATC 6 cut(s) 187, 210, 492, 761, 1189, 1210
BstMCI CGRYCG 1 cut(s) 323
BstMWI GCNNNNNNNGC 6 cut(s) 191, 431, 521, 826, 852, 1154
BstSCI CCNGG 1 cut(s) 94
BstSFI CTRYAG 4 cut(s) 183, 705, 847, 1164
BstSLI GKGCMC 1 cut(s) 387
BstUI CGCG 2 cut(s) 430, 1013
BstV1I GCAGC 5 cut(s) 169, 318, 412, 768, 1160
BstX2I RGATCY 3 cut(s) 187, 1189, 1210
BstXI CCANNNNNNTGG 1 cut(s) 247
BstYI RGATCY 3 cut(s) 187, 1189, 1210
BsuI GTATCC 1 cut(s) 1114
BsuRI GGCC 8 cut(s) 239, 286, 395, 505, 732, 855, 876, 1026
BtgI CCRYGG 3 cut(s) 936, 1128, 1185
BtgZI GCGATG 1 cut(s) 1172
BtsCI GGATG 3 cut(s) 128, 721, 1072
BtsI GCAGTG 1 cut(s) 445
BtsIMutI CAGTG 2 cut(s) 220, 445
Cac8I GCNNGC 7 cut(s) 220, 432, 510, 522, 786, 878, 1197
CaiI CAGNNNCTG 1 cut(s) 219
CfoI GCGC 1 cut(s) 1015
Cfr10I RCCGGY 3 cut(s) 16, 289, 876
Cfr13I GGNCC 3 cut(s) 393, 730, 1182
CseI GACGC 3 cut(s) 436, 918, 1039
Csp6I GTAC 2 cut(s) 42, 154
CspAI ACCGGT 1 cut(s) 16
CviQI GTAC 2 cut(s) 42, 154
DdeI CTNAG 2 cut(s) 984, 1274
DpnI GATC 6 cut(s) 189, 212, 494, 763, 1191, 1212
DpnII GATC 6 cut(s) 187, 210, 492, 761, 1189, 1210
DraI TTTAAA 1 cut(s) 745
EaeI YGGCCR 4 cut(s) 237, 503, 853, 1024
Eam1104I CTCTTC 3 cut(s) 581, 664, 1267
EarI CTCTTC 3 cut(s) 581, 664, 1267
EciI GGCGGA 2 cut(s) 530, 617
Eco130I CCWWGG 1 cut(s) 871
Eco32I GATATC 1 cut(s) 1044
Eco47I GGWCC 1 cut(s) 1182
Eco88I CYCGRG 1 cut(s) 841
EcoRV GATATC 1 cut(s) 1044
EcoT14I CCWWGG 1 cut(s) 871
ErhI CCWWGG 1 cut(s) 871
Esp3I CGTCTC 3 cut(s) 96, 124, 356
FaiI YATR 7 cut(s) 281, 528, 686, 735, 771, 849, 1281
FaqI GGGAC 2 cut(s) 994, 1195
FauI CCCGC 4 cut(s) 74, 251, 443, 1192
FokI GGATG 3 cut(s) 115, 728, 1079
FspBI CTAG 3 cut(s) 821, 1224, 1285
GlaI GCGC 1 cut(s) 1014
GsaI CCCAGC 2 cut(s) 865, 1182
GsuI CTGGAG 2 cut(s) 425, 1227
HaeIII GGCC 8 cut(s) 239, 286, 395, 505, 732, 855, 876, 1026
HapII CCGG 9 cut(s) 17, 96, 290, 323, 335, 856, 877, 1027, 1254
HgaI GACGC 3 cut(s) 436, 918, 1039
HhaI GCGC 1 cut(s) 1015
Hin1I GRCGYC 1 cut(s) 1031
Hin6I GCGC 1 cut(s) 1013
HinP1I GCGC 1 cut(s) 1013
HinfI GANTC 6 cut(s) 159, 409, 442, 955, 997, 1008
HpaII CCGG 9 cut(s) 17, 96, 290, 323, 335, 856, 877, 1027, 1254
HphI GGTGA 9 cut(s) 3, 622, 668, 689, 731, 756, 901, 950, 1099
Hpy166II GTNNAC 3 cut(s) 385, 637, 936
Hpy188I TCNGA 3 cut(s) 320, 920, 1066
Hpy188III TCNNGA 4 cut(s) 169, 197, 299, 1224
Hpy8I GTNNAC 3 cut(s) 385, 637, 936
Hpy99I CGWCG 6 cut(s) 7, 153, 430, 934, 955, 1066
HpyAV CCTTC 5 cut(s) 301, 644, 799, 1096, 1256
HpyCH4III ACNGT 8 cut(s) 90, 103, 118, 153, 907, 940, 1129, 1186
HpyCH4IV ACGT 2 cut(s) 2, 44
HpyCH4V TGCA 5 cut(s) 128, 185, 385, 784, 910
HpyF10VI GCNNNNNNNGC 6 cut(s) 191, 431, 521, 826, 852, 1154
HpyF3I CTNAG 2 cut(s) 984, 1274
HpySE526I ACGT 2 cut(s) 2, 44
Hsp92I GRCGYC 1 cut(s) 1031
HspAI GCGC 1 cut(s) 1013
KroI GCCGGC 1 cut(s) 876
KroNI GCCGGC 1 cut(s) 878
Kzo9I GATC 6 cut(s) 187, 210, 492, 761, 1189, 1210
LguI GCTCTTC 1 cut(s) 664
LmnI GCTCC 6 cut(s) 349, 517, 568, 701, 858, 1202
Lsp1109I GCAGC 5 cut(s) 169, 318, 412, 768, 1160
LweI GCATC 2 cut(s) 78, 137
MaeI CTAG 3 cut(s) 821, 1224, 1285
MaeII ACGT 2 cut(s) 2, 44
MaeIII GTNAC 2 cut(s) 296, 443
MalI GATC 6 cut(s) 189, 212, 494, 763, 1191, 1212
MboI GATC 6 cut(s) 187, 210, 492, 761, 1189, 1210
MboII GAAGA 4 cut(s) 598, 681, 703, 1254
MflI RGATCY 3 cut(s) 187, 1189, 1210
MhlI GDGCHC 1 cut(s) 387
MlsI TGGCCA 1 cut(s) 239
MluCI AATT 3 cut(s) 233, 756, 911
MluNI TGGCCA 1 cut(s) 239
MlyI GAGTC 1 cut(s) 451
MmeI TCCRAC 2 cut(s) 343, 1044
Mox20I TGGCCA 1 cut(s) 239
MroNI GCCGGC 1 cut(s) 876
MscI TGGCCA 1 cut(s) 239
MseI TTAA 2 cut(s) 744, 774
MslI CAYNNNNRTG 2 cut(s) 74, 905
Msp20I TGGCCA 1 cut(s) 239
MspA1I CMGCKG 4 cut(s) 182, 403, 508, 1151
MspI CCGG 9 cut(s) 17, 96, 290, 323, 335, 856, 877, 1027, 1254
MspR9I CCNGG 1 cut(s) 96
MvnI CGCG 2 cut(s) 430, 1013
MwoI GCNNNNNNNGC 6 cut(s) 191, 431, 521, 826, 852, 1154
NaeI GCCGGC 1 cut(s) 878
NciI CCSGG 1 cut(s) 96
NdeII GATC 6 cut(s) 187, 210, 492, 761, 1189, 1210
NgoMIV GCCGGC 1 cut(s) 876
NlaIV GGNNCC 2 cut(s) 489, 1183
NmuCI GTSAC 2 cut(s) 296, 443
OliI CACNNNNGTG 1 cut(s) 905
PaeR7I CTCGAG 1 cut(s) 841
PciSI GCTCTTC 1 cut(s) 664
PcsI WCGNNNNNNNCGW 2 cut(s) 422, 1037
PdiI GCCGGC 1 cut(s) 878
PfeI GAWTC 5 cut(s) 159, 409, 955, 997, 1008
Pfl23II CGTACG 1 cut(s) 41
PflFI GACNNNGTC 2 cut(s) 88, 116
PfoI TCCNGGA 1 cut(s) 94
PinAI ACCGGT 1 cut(s) 16
PleI GAGTC 1 cut(s) 450
PpsI GAGTC 1 cut(s) 450
Ppu21I YACGTR 1 cut(s) 45
PspFI CCCAGC 2 cut(s) 861, 1178
PspLI CGTACG 1 cut(s) 41
PspN4I GGNNCC 2 cut(s) 489, 1183
PspPI GGNCC 3 cut(s) 393, 730, 1182
PspXI VCTCGAGB 1 cut(s) 841
PstI CTGCAG 1 cut(s) 187
PstNI CAGNNNCTG 1 cut(s) 219
PsuI RGATCY 3 cut(s) 187, 1189, 1210
PsyI GACNNNGTC 2 cut(s) 88, 116
PvuII CAGCTG 2 cut(s) 182, 403
RsaI GTAC 2 cut(s) 43, 155
RsaNI GTAC 2 cut(s) 42, 154
RseI CAYNNNNRTG 2 cut(s) 74, 905
SapI GCTCTTC 1 cut(s) 664
SaqAI TTAA 2 cut(s) 744, 774
Sau3AI GATC 6 cut(s) 187, 210, 492, 761, 1189, 1210
Sau96I GGNCC 3 cut(s) 393, 730, 1182
SchI GAGTC 1 cut(s) 451
ScrFI CCNGG 1 cut(s) 96
SduI GDGCHC 1 cut(s) 387
SfaNI GCATC 2 cut(s) 78, 137
SfcI CTRYAG 4 cut(s) 183, 705, 847, 1164
Sfr274I CTCGAG 1 cut(s) 841
SgrAI CRCCGGYG 2 cut(s) 16, 289
SinI GGWCC 1 cut(s) 1182
SlaI CTCGAG 1 cut(s) 841
SmiMI CAYNNNNRTG 2 cut(s) 74, 905
SmlI CTYRAG 2 cut(s) 475, 841
SmoI CTYRAG 2 cut(s) 475, 841
Sse9I AATT 3 cut(s) 233, 756, 911
SspMI CTAG 3 cut(s) 821, 1224, 1285
StyD4I CCNGG 1 cut(s) 94
StyI CCWWGG 1 cut(s) 871
TaaI ACNGT 8 cut(s) 90, 103, 118, 153, 907, 940, 1129, 1186
TaiI ACGT 1 cut(s) 47
TaqI TCGA 6 cut(s) 168, 198, 345, 760, 842, 1046
TasI AATT 3 cut(s) 233, 756, 911
TauI GCSGC 5 cut(s) 40, 147, 289, 508, 515
TfiI GAWTC 5 cut(s) 159, 409, 955, 997, 1008
Tru1I TTAA 2 cut(s) 744, 774
Tru9I TTAA 2 cut(s) 744, 774
TscAI CASTG 2 cut(s) 220, 452
TseFI GTSAC 2 cut(s) 296, 443
TseI GCWGC 5 cut(s) 182, 331, 400, 781, 1148
Tsp45I GTSAC 2 cut(s) 296, 443
TspDTI ATGAA 1 cut(s) 216
TspGWI ACGGA 4 cut(s) 121, 171, 1042, 1094
TspRI CASTG 2 cut(s) 220, 452
Tth111I GACNNNGTC 2 cut(s) 88, 116
VneI GTGCAC 1 cut(s) 383
VpaK11BI GGWCC 1 cut(s) 1182
XapI RAATTY 1 cut(s) 756
XbaI TCTAGA 1 cut(s) 1223
XhoI CTCGAG 1 cut(s) 841
XspI CTAG 3 cut(s) 821, 1224, 1285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.