RchiOBHm_Chr4g0409101

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
32270360 .. 32270695
336 bp
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UTR
Exon/CDS
Intron
PRQ38016

Sequence Viewer

Length: 336 bp
ATGGTGGAGAGCTTGAGTAGAGAGGTGCCGATCATCAATTGGCCACTCGCTGTGAAGCAGGCTTTTAACTCGAAGTTGTTGGCAGAGGAGATGGGTGTGAGTGTGGAGCTGACGAGGAATGTGAAGAGTAATGCGGTGGCGGAGGAGGTGAGGAGAGTGATTGAGTTGATGGTGGATGAGAGTGGGGAAGGAGGTGAGATTAGGAGAAGAGCTGGAGAGATTATGGAGAAGATTAGTGGAGCTGTAGGGGAGGATGGTGAAGCAAAGGGGTCTTCTGTTAAAGCTTTGGATGATTTTGTTTCTAAACTTCTATCACAAAGAGAAGGCAGAGGATAA
Functional Annotation

Protein Analysis

111

Amino Acids

12.07

Weight (kDa)

4.99

Isoelectric Point (pI)

42.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 25
AciI CCGC 2 cut(s) 134, 140
AcoI YGGCCR 1 cut(s) 41
AluBI AGCT 5 cut(s) 12, 109, 212, 242, 284
AluI AGCT 5 cut(s) 12, 109, 212, 242, 284
AoxI GGCC 1 cut(s) 41
AsuHPI GGTGA 3 cut(s) 160, 206, 269
BalI TGGCCA 1 cut(s) 43
BanI GGYRCC 1 cut(s) 25
BbsI GAAGAC 1 cut(s) 264
BccI CCATC 3 cut(s) 85, 163, 248
BfmI CTRYAG 1 cut(s) 243
BmiI GGNNCC 1 cut(s) 27
BpiI GAAGAC 1 cut(s) 264
BpmI CTGGAG 1 cut(s) 234
BpuEI CTTGAG 1 cut(s) 34
BseGI GGATG 3 cut(s) 181, 259, 295
BseRI GAGGAG 3 cut(s) 101, 158, 166
BshFI GGCC 1 cut(s) 43
BshNI GGYRCC 1 cut(s) 25
BsnI GGCC 1 cut(s) 43
Bsp143I GATC 1 cut(s) 30
BspACI CCGC 2 cut(s) 134, 140
BspANI GGCC 1 cut(s) 43
BspLI GGNNCC 1 cut(s) 27
BspQI GCTCTTC 1 cut(s) 202
BspT107I GGYRCC 1 cut(s) 25
BssMI GATC 1 cut(s) 30
Bst6I CTCTTC 2 cut(s) 119, 202
BstC8I GCNNGC 1 cut(s) 60
BstF5I GGATG 3 cut(s) 181, 259, 295
BstKTI GATC 1 cut(s) 33
BstMBI GATC 1 cut(s) 30
BstSFI CTRYAG 1 cut(s) 243
BstV2I GAAGAC 1 cut(s) 264
BsuRI GGCC 1 cut(s) 43
BtsCI GGATG 3 cut(s) 181, 259, 295
Cac8I GCNNGC 1 cut(s) 60
CviJI RGCY 7 cut(s) 12, 43, 62, 109, 212, 242, 284
CviKI_1 RGCY 7 cut(s) 12, 43, 62, 109, 212, 242, 284
DpnI GATC 1 cut(s) 32
DpnII GATC 1 cut(s) 30
EaeI YGGCCR 1 cut(s) 41
Eam1104I CTCTTC 2 cut(s) 119, 202
EarI CTCTTC 2 cut(s) 119, 202
EciI GGCGGA 1 cut(s) 155
FaiI YATR 1 cut(s) 224
FokI GGATG 3 cut(s) 188, 266, 302
GsuI CTGGAG 1 cut(s) 234
HaeIII GGCC 1 cut(s) 43
HindIII AAGCTT 1 cut(s) 282
HphI GGTGA 3 cut(s) 160, 206, 269
HpyAV CCTTC 2 cut(s) 182, 317
Kzo9I GATC 1 cut(s) 30
LguI GCTCTTC 1 cut(s) 202
LmnI GCTCC 2 cut(s) 106, 239
LpnPI CCDG 2 cut(s) 44, 198
MalI GATC 1 cut(s) 32
MboI GATC 1 cut(s) 30
MboII GAAGA 4 cut(s) 136, 219, 241, 264
MfeI CAATTG 1 cut(s) 37
MlsI TGGCCA 1 cut(s) 43
MluCI AATT 1 cut(s) 37
MluNI TGGCCA 1 cut(s) 43
MnlI CCTC 9 cut(s) 16, 79, 108, 136, 139, 144, 185, 244, 323
Mox20I TGGCCA 1 cut(s) 43
MscI TGGCCA 1 cut(s) 43
MseI TTAA 2 cut(s) 66, 279
Msp20I TGGCCA 1 cut(s) 43
MunI CAATTG 1 cut(s) 37
NdeII GATC 1 cut(s) 30
NlaIV GGNNCC 1 cut(s) 27
PciSI GCTCTTC 1 cut(s) 202
PspN4I GGNNCC 1 cut(s) 27
SapI GCTCTTC 1 cut(s) 202
SaqAI TTAA 2 cut(s) 66, 279
Sau3AI GATC 1 cut(s) 30
SetI ASST 8 cut(s) 14, 27, 111, 150, 196, 214, 244, 286
SfcI CTRYAG 1 cut(s) 243
SgeI CNNG 6 cut(s) 25, 59, 71, 82, 126, 225
SmlI CTYRAG 1 cut(s) 13
SmoI CTYRAG 1 cut(s) 13
Sse9I AATT 1 cut(s) 37
SsiI CCGC 2 cut(s) 134, 140
TaqI TCGA 1 cut(s) 71
TasI AATT 1 cut(s) 37
Tru1I TTAA 2 cut(s) 66, 279
Tru9I TTAA 2 cut(s) 66, 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.