Rh4DG147300

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0001515
Physical Location & Seq
Forward (+)
29393774 .. 29395427
1654 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG147300.1

Sequence Viewer

Length: 1446 bp
ATGGGTTTTGATGAGGAGCATATAGTGATGCTACCGTTCTTGGCTCAAGGCCATCTGATCCCATTCCTAGCCCTAGCCAAGCAAATCCAGCAAAGAACAGGCTTCACTATCACCATCGCCACCACCCCACTCAACGCCCAATACCTTCGTTCTCCCCAACCTAACAGCAACATCCACTTGGCCGAGCTTCCCTTCCGCAGTGAAGACTATGGCCTCCCCCCAAACACGGAGAACTCAGAGAATATACCTCTCGACTTATTCGGAACCCTACTCACTGCATCGCAACATCTAGAAGCTCCGACTCGCCGTCTAGTCTCGGACATCACCCAAAAGGAAGGCAAGCCACCGCTTTGCTTAATCTCCGACATGTTTTTTGGGTGGGCTGTGAATGTAGCAAAAAGCTCTGGCACCGTCAACGTTGCTATCACCACCGCAGGGGCTTACGGTACGACGGCGTTTATGTCCTTGTGTGTGTCTTCAGACGATGAGGAGTTCAACATTCCGGGGTTCCCAGAACTGTGTCGTCTGACACCGTCTCACTTGCATCAGTTTCTCAGAGCTGCCAATGGTACAGATTCTTGGTCGAGATTTTTTCGGACGCAGACCTCGCTCTCGATGAAGTCTTTTGGTTGGATGTGCAACACCGTTGAAGAAATCGAGCCGTTCGGATTGAAAGTGTTGCGAAATTACATCAAGCTCCCTGTTTGGTCCATTTTGGCTTCCAACATTTCCAGCCAAAAATATTCCAGCAAGAAATGGGGAATTTCGGCAGAGAAATGCACCGAGTGGCTTGACTCGCACAGTGCTGATTCGGTGGTGTACATCTCATTTGGTTCCCAGAACACGATCAGCGCCTCCCAGATGATGGAATTGGCCAAAGGTTTGGAAAAGAGTGGGAAGCCTTTTGTCTGGGTCGTAAGGCCACCGGTGGGGCACGACATGAAGGGTGAGTTCCGATCGGAATGGCTGCCGGAGCGTTTCGAGGAGCGAATGAGGGAGATGAAGCAAGGGTTACTGGTGCACAACTGGGCCCCGCAGCTGGAGATACTATCGCACATGGCGACGCGCGCGTTTGTGAGTCACTGCGGGTGGAACTCGGTGCTGGAGAGCTTGAGCAGAGGGGTGCCGATCATTGGGTGGCCGCTGGCGGCGGAGCAGCCGTATAACTCGAAGATGTTGGCGGAGGAGATGGGTGTGAGTGTGGAGTTGACGAGGGGTGTGAACAGTAATGTAGAGGCGGAAGAGGTGAGGAGAGTGATTGAGTTTGTGGTGGATGAGAGTGGCGAAGGTGGTGAGATGAGGAGAAGAGCTGGTGAGATTATGGAGAAGATAAGAGGAGCTGTACGGGAGGATGGTGAAGCAAAGGGATCTTCCGTTAAAGCTATGGATGATTTTGTAACTGAACTTTTATTGCAGAGAGAAGAAAGAGGATCAAAAATCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

481

Amino Acids

53.78

Weight (kDa)

5.6

Isoelectric Point (pI)

51.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_N PF26168 8 - 224 4.1e-07 Glycosyltransferase, N-terminal domain
UDPGT PF00201 257 - 404 1.3e-23 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 407, 1123
AccB7I CCANNNNNTGG 1 cut(s) 865
AccII CGCG 3 cut(s) 1066, 1068, 1070
AclI AACGTT 1 cut(s) 417
AclWI GGATC 3 cut(s) 52, 1375, 1438
AcoI YGGCCR 3 cut(s) 180, 873, 1139
AcsI RAATTY 1 cut(s) 762
AcuI CTGAAG 1 cut(s) 462
AdeI CACNNNGTG 1 cut(s) 786
AfaI GTAC 4 cut(s) 448, 571, 821, 1344
AfiI CCNNNNNNNGG 6 cut(s) 226, 435, 865, 929, 1039, 1133
AflIII ACRYGT 1 cut(s) 366
AgeI ACCGGT 1 cut(s) 925
AgsI TTSAA 3 cut(s) 496, 650, 673
AhdI GACNNNNNGTC 1 cut(s) 306
Alw21I GWGCWC 1 cut(s) 1023
Alw26I GTCTC 2 cut(s) 319, 540
Alw44I GTGCAC 1 cut(s) 1019
AlwI GGATC 3 cut(s) 52, 1375, 1438
AoxI GGCC 7 cut(s) 49, 180, 211, 873, 920, 1029, 1139
ApaI GGGCCC 1 cut(s) 1033
ApaLI GTGCAC 1 cut(s) 1019
ApeKI GCWGC 4 cut(s) 560, 967, 1036, 1156
ApoI RAATTY 1 cut(s) 762
ArsI GACNNNNNNTTYG 2 cut(s) 356, 388
AsiGI ACCGGT 1 cut(s) 925
AspLEI GCGC 3 cut(s) 854, 1068, 1070
AspS9I GGNCC 3 cut(s) 708, 1029, 1030
AsuC2I CCSGG 1 cut(s) 504
AsuHPI GGTGA 8 cut(s) 103, 316, 418, 959, 1258, 1304, 1325, 1367
AvaII GGWCC 1 cut(s) 708
BaeGI GKGCMC 3 cut(s) 936, 1023, 1033
BalI TGGCCA 1 cut(s) 875
BanI GGYRCC 2 cut(s) 407, 1123
BanII GRGCYC 1 cut(s) 1033
BbsI GAAGAC 2 cut(s) 210, 468
Bbv12I GWGCWC 1 cut(s) 1023
BbvI GCAGC 4 cut(s) 547, 954, 1048, 1168
BccI CCATC 5 cut(s) 60, 122, 859, 1183, 1346
BceAI ACGGC 4 cut(s) 291, 468, 646, 1144
BcnI CCSGG 1 cut(s) 504
BcoDI GTCTC 2 cut(s) 319, 540
BfaI CTAG 4 cut(s) 68, 74, 290, 311
BfoI RGCGCY 1 cut(s) 855
BisI GCNGC 6 cut(s) 561, 968, 1037, 1142, 1149, 1157
BlsI GCNGC 6 cut(s) 562, 969, 1038, 1143, 1150, 1158
Bme1390I CCNGG 1 cut(s) 504
Bme18I GGWCC 1 cut(s) 708
BmeRI GACNNNNNGTC 1 cut(s) 306
BmgT120I GGNCC 3 cut(s) 708, 1029, 1030
BmiI GGNNCC 7 cut(s) 265, 409, 509, 835, 1031, 1032, 1125
BmrFI CCNGG 1 cut(s) 504
BmrI ACTGGG 1 cut(s) 1036
BmsI GCATC 3 cut(s) 18, 287, 553
BmuI ACTGGG 1 cut(s) 1036
BpiI GAAGAC 2 cut(s) 210, 468
BpmI CTGGAG 2 cut(s) 1061, 1124
BpuEI CTTGAG 2 cut(s) 30, 1132
BpuMI CCSGG 1 cut(s) 504
BsaJI CCNNGG 1 cut(s) 503
BsaWI WCCGGW 1 cut(s) 925
BsaXI ACNNNNNCTCC 2 cut(s) 1145, 1175
Bsc4I CCNNNNNNNGG 6 cut(s) 226, 435, 865, 929, 1039, 1133
Bse118I RCCGGY 1 cut(s) 925
Bse1I ACTGG 2 cut(s) 1020, 1031
BseDI CCNNGG 1 cut(s) 503
BseGI GGATG 5 cut(s) 171, 639, 1279, 1357, 1393
BseLI CCNNNNNNNGG 6 cut(s) 226, 435, 865, 929, 1039, 1133
BseMII CTCAG 2 cut(s) 249, 568
BseNI ACTGG 2 cut(s) 1020, 1031
BsePI GCGCGC 1 cut(s) 1066
BseRI GAGGAG 7 cut(s) 29, 503, 998, 1199, 1264, 1315, 1350
BseSI GKGCMC 3 cut(s) 936, 1023, 1033
BseXI GCAGC 4 cut(s) 547, 954, 1048, 1168
Bsh1236I CGCG 3 cut(s) 1066, 1068, 1070
Bsh1285I CGRYCG 1 cut(s) 959
BshFI GGCC 7 cut(s) 51, 182, 213, 875, 922, 1031, 1141
BshNI GGYRCC 2 cut(s) 407, 1123
BshTI ACCGGT 1 cut(s) 925
BsiEI CGRYCG 1 cut(s) 959
BsiHKAI GWGCWC 1 cut(s) 1023
BsiSI CCGG 3 cut(s) 503, 926, 971
BslI CCNNNNNNNGG 6 cut(s) 226, 435, 865, 929, 1039, 1133
BsmAI GTCTC 2 cut(s) 319, 540
BsmBI CGTCTC 1 cut(s) 540
BsnI GGCC 7 cut(s) 51, 182, 213, 875, 922, 1031, 1141
Bsp120I GGGCCC 1 cut(s) 1029
Bsp1286I GDGCHC 3 cut(s) 936, 1023, 1033
Bsp1407I TGTACA 1 cut(s) 819
Bsp143I GATC 6 cut(s) 57, 846, 956, 1128, 1367, 1430
BspANI GGCC 7 cut(s) 51, 182, 213, 875, 922, 1031, 1141
BspCNI CTCAG 2 cut(s) 248, 567
BspFNI CGCG 3 cut(s) 1066, 1068, 1070
BspLI GGNNCC 7 cut(s) 265, 409, 509, 835, 1031, 1032, 1125
BspPI GGATC 3 cut(s) 52, 1375, 1438
BspQI GCTCTTC 1 cut(s) 1300
BspT107I GGYRCC 2 cut(s) 407, 1123
BsrFI RCCGGY 1 cut(s) 925
BsrGI TGTACA 1 cut(s) 819
BsrI ACTGG 2 cut(s) 1020, 1031
BssAI RCCGGY 1 cut(s) 925
BssECI CCNNGG 1 cut(s) 503
BssHII GCGCGC 1 cut(s) 1066
BssMI GATC 6 cut(s) 57, 846, 956, 1128, 1367, 1430
Bst4CI ACNGT 8 cut(s) 36, 412, 446, 519, 534, 646, 803, 1226
Bst6I CTCTTC 2 cut(s) 1236, 1300
BstAUI TGTACA 1 cut(s) 819
BstC8I GCNNGC 3 cut(s) 341, 1068, 1146
BstDEI CTNAG 2 cut(s) 235, 554
BstF5I GGATG 5 cut(s) 171, 639, 1279, 1357, 1393
BstFNI CGCG 3 cut(s) 1066, 1068, 1070
BstH2I RGCGCY 1 cut(s) 855
BstHHI GCGC 3 cut(s) 854, 1068, 1070
BstKTI GATC 6 cut(s) 60, 849, 959, 1131, 1370, 1433
BstMAI GTCTC 2 cut(s) 319, 540
BstMBI GATC 6 cut(s) 57, 846, 956, 1128, 1367, 1430
BstMCI CGRYCG 1 cut(s) 959
BstMWI GCNNNNNNNGC 5 cut(s) 88, 607, 796, 973, 1067
BstNSI RCATGY 1 cut(s) 370
BstSCI CCNGG 1 cut(s) 502
BstSLI GKGCMC 3 cut(s) 936, 1023, 1033
BstUI CGCG 3 cut(s) 1066, 1068, 1070
BstV1I GCAGC 4 cut(s) 547, 954, 1048, 1168
BstV2I GAAGAC 2 cut(s) 210, 468
BstX2I RGATCY 1 cut(s) 1367
BstXI CCANNNNNNTGG 1 cut(s) 883
BstYI RGATCY 1 cut(s) 1367
BsuRI GGCC 7 cut(s) 51, 182, 213, 875, 922, 1031, 1141
BtgZI GCGATG 2 cut(s) 100, 264
BtsCI GGATG 5 cut(s) 171, 639, 1279, 1357, 1393
BtsI GCAGTG 3 cut(s) 205, 273, 1081
BtsIMutI CAGTG 4 cut(s) 205, 273, 808, 1081
Cac8I GCNNGC 3 cut(s) 341, 1068, 1146
CfoI GCGC 3 cut(s) 854, 1068, 1070
Cfr10I RCCGGY 1 cut(s) 925
Cfr13I GGNCC 3 cut(s) 708, 1029, 1030
CseI GACGC 2 cut(s) 607, 1072
Csp6I GTAC 4 cut(s) 447, 570, 820, 1343
CspAI ACCGGT 1 cut(s) 925
CviAII CATG 3 cut(s) 367, 940, 1057
CviQI GTAC 4 cut(s) 447, 570, 820, 1343
DdeI CTNAG 2 cut(s) 235, 554
DpnI GATC 6 cut(s) 59, 848, 958, 1130, 1369, 1432
DpnII GATC 6 cut(s) 57, 846, 956, 1128, 1367, 1430
DraIII CACNNNGTG 1 cut(s) 786
DriI GACNNNNNGTC 1 cut(s) 306
EaeI YGGCCR 3 cut(s) 180, 873, 1139
Eam1104I CTCTTC 2 cut(s) 1236, 1300
Eam1105I GACNNNNNGTC 1 cut(s) 306
EarI CTCTTC 2 cut(s) 1236, 1300
EciI GGCGGA 3 cut(s) 1166, 1196, 1253
Eco24I GRGCYC 1 cut(s) 1033
Eco47I GGWCC 1 cut(s) 708
Eco57I CTGAAG 1 cut(s) 462
EcoO109I RGGNCCY 1 cut(s) 1030
EcoT38I GRGCYC 1 cut(s) 1033
Esp3I CGTCTC 1 cut(s) 540
FaeI CATG 3 cut(s) 370, 943, 1060
FatI CATG 3 cut(s) 366, 939, 1056
FauI CCCGC 2 cut(s) 1041, 1079
Fnu4HI GCNGC 6 cut(s) 561, 968, 1037, 1142, 1149, 1157
FokI GGATG 5 cut(s) 158, 646, 1286, 1364, 1400
FriOI GRGCYC 1 cut(s) 1033
Fsp4HI GCNGC 6 cut(s) 561, 968, 1037, 1142, 1149, 1157
FspBI CTAG 4 cut(s) 68, 74, 290, 311
GlaI GCGC 3 cut(s) 853, 1067, 1069
GluI GCNGC 6 cut(s) 561, 968, 1037, 1142, 1149, 1157
GsuI CTGGAG 2 cut(s) 1061, 1124
HaeII RGCGCY 1 cut(s) 855
HaeIII GGCC 7 cut(s) 51, 182, 213, 875, 922, 1031, 1141
HapII CCGG 3 cut(s) 503, 926, 971
HgaI GACGC 2 cut(s) 607, 1072
HhaI GCGC 3 cut(s) 854, 1068, 1070
Hin1II CATG 3 cut(s) 370, 943, 1060
Hin6I GCGC 3 cut(s) 852, 1066, 1068
HinP1I GCGC 3 cut(s) 852, 1066, 1068
HincII GTYRAC 2 cut(s) 415, 1209
HindII GTYRAC 2 cut(s) 415, 1209
HinfI GANTC 5 cut(s) 301, 575, 794, 809, 1078
HpaII CCGG 3 cut(s) 503, 926, 971
HphI GGTGA 8 cut(s) 103, 316, 418, 959, 1258, 1304, 1325, 1367
Hpy166II GTNNAC 5 cut(s) 415, 820, 1021, 1209, 1222
Hpy188III TCNNGA 4 cut(s) 251, 290, 585, 613
Hpy8I GTNNAC 5 cut(s) 415, 820, 1021, 1209, 1222
Hpy99I CGWCG 2 cut(s) 454, 1066
HpyAV CCTTC 5 cut(s) 155, 202, 329, 937, 1280
HpyCH4III ACNGT 8 cut(s) 36, 412, 446, 519, 534, 646, 803, 1226
HpyCH4IV ACGT 1 cut(s) 417
HpyCH4V TGCA 6 cut(s) 278, 544, 639, 780, 1021, 1414
HpyF10VI GCNNNNNNNGC 5 cut(s) 88, 607, 796, 973, 1067
HpyF3I CTNAG 2 cut(s) 235, 554
HpySE526I ACGT 1 cut(s) 417
Hsp92II CATG 3 cut(s) 370, 943, 1060
HspAI GCGC 3 cut(s) 852, 1066, 1068
Kzo9I GATC 6 cut(s) 57, 846, 956, 1128, 1367, 1430
LguI GCTCTTC 1 cut(s) 1300
LmnI GCTCC 7 cut(s) 16, 301, 702, 973, 985, 1153, 1337
Lsp1109I GCAGC 4 cut(s) 547, 954, 1048, 1168
LweI GCATC 3 cut(s) 18, 287, 553
MaeI CTAG 4 cut(s) 68, 74, 290, 311
MaeII ACGT 1 cut(s) 417
MaeIII GTNAC 3 cut(s) 1011, 1079, 1396
MalI GATC 6 cut(s) 59, 848, 958, 1130, 1369, 1432
MauBI CGCGCGCG 1 cut(s) 1066
MboI GATC 6 cut(s) 57, 846, 956, 1128, 1367, 1430
MboII GAAGA 9 cut(s) 215, 468, 662, 1183, 1253, 1317, 1339, 1362, 1433
MflI RGATCY 1 cut(s) 1367
MhlI GDGCHC 3 cut(s) 936, 1023, 1033
MlsI TGGCCA 1 cut(s) 875
MluCI AATT 4 cut(s) 685, 762, 869, 1441
MluNI TGGCCA 1 cut(s) 875
MlyI GAGTC 3 cut(s) 295, 788, 1087
MmeI TCCRAC 4 cut(s) 323, 387, 611, 747
Mox20I TGGCCA 1 cut(s) 875
MscI TGGCCA 1 cut(s) 875
MseI TTAA 3 cut(s) 356, 1377, 1444
Msp20I TGGCCA 1 cut(s) 875
MspA1I CMGCKG 2 cut(s) 1039, 1144
MspI CCGG 3 cut(s) 503, 926, 971
MspR9I CCNGG 1 cut(s) 504
MvnI CGCG 3 cut(s) 1066, 1068, 1070
MwoI GCNNNNNNNGC 5 cut(s) 88, 607, 796, 973, 1067
NciI CCSGG 1 cut(s) 504
NdeII GATC 6 cut(s) 57, 846, 956, 1128, 1367, 1430
NlaIII CATG 3 cut(s) 370, 943, 1060
NlaIV GGNNCC 7 cut(s) 265, 409, 509, 835, 1031, 1032, 1125
NmeAIII GCCGAG 1 cut(s) 208
NmuCI GTSAC 1 cut(s) 1079
NspI RCATGY 1 cut(s) 370
PauI GCGCGC 1 cut(s) 1066
PciI ACATGT 1 cut(s) 366
PciSI GCTCTTC 1 cut(s) 1300
PcsI WCGNNNNNNNCGW 1 cut(s) 1058
PfeI GAWTC 2 cut(s) 575, 809
PflFI GACNNNGTC 1 cut(s) 532
PflMI CCANNNNNTGG 1 cut(s) 865
PinAI ACCGGT 1 cut(s) 925
PkrI GCNGC 6 cut(s) 562, 969, 1038, 1143, 1150, 1158
Ple19I CGATCG 1 cut(s) 959
PleI GAGTC 3 cut(s) 295, 788, 1086
PpsI GAGTC 3 cut(s) 295, 788, 1086
PscI ACATGT 1 cut(s) 366
Psp1406I AACGTT 1 cut(s) 417
PspN4I GGNNCC 7 cut(s) 265, 409, 509, 835, 1031, 1032, 1125
PspOMI GGGCCC 1 cut(s) 1029
PspPI GGNCC 3 cut(s) 708, 1029, 1030
PsuI RGATCY 1 cut(s) 1367
PsyI GACNNNGTC 1 cut(s) 532
PteI GCGCGC 1 cut(s) 1066
PvuI CGATCG 1 cut(s) 959
PvuII CAGCTG 1 cut(s) 1039
RsaI GTAC 4 cut(s) 448, 571, 821, 1344
RsaNI GTAC 4 cut(s) 447, 570, 820, 1343
SapI GCTCTTC 1 cut(s) 1300
SaqAI TTAA 3 cut(s) 356, 1377, 1444
SatI GCNGC 6 cut(s) 561, 968, 1037, 1142, 1149, 1157
Sau3AI GATC 6 cut(s) 57, 846, 956, 1128, 1367, 1430
Sau96I GGNCC 3 cut(s) 708, 1029, 1030
SchI GAGTC 3 cut(s) 295, 788, 1087
ScrFI CCNGG 1 cut(s) 504
SduI GDGCHC 3 cut(s) 936, 1023, 1033
SfaNI GCATC 3 cut(s) 18, 287, 553
SgrAI CRCCGGYG 1 cut(s) 925
SinI GGWCC 1 cut(s) 708
SmlI CTYRAG 2 cut(s) 45, 1111
SmoI CTYRAG 2 cut(s) 45, 1111
Sse9I AATT 4 cut(s) 685, 762, 869, 1441
SspI AATATT 1 cut(s) 743
SspMI CTAG 4 cut(s) 68, 74, 290, 311
StyD4I CCNGG 1 cut(s) 502
TaaI ACNGT 8 cut(s) 36, 412, 446, 519, 534, 646, 803, 1226
TaiI ACGT 1 cut(s) 420
TaqI TCGA 6 cut(s) 252, 584, 614, 657, 981, 1169
TasI AATT 4 cut(s) 685, 762, 869, 1441
TatI WGTACW 1 cut(s) 819
TauI GCSGC 2 cut(s) 1144, 1151
TfiI GAWTC 2 cut(s) 575, 809
Tru1I TTAA 3 cut(s) 356, 1377, 1444
Tru9I TTAA 3 cut(s) 356, 1377, 1444
TscAI CASTG 4 cut(s) 205, 280, 808, 1088
TseFI GTSAC 1 cut(s) 1079
TseI GCWGC 4 cut(s) 560, 967, 1036, 1156
Tsp45I GTSAC 1 cut(s) 1079
TspDTI ATGAA 3 cut(s) 632, 956, 1016
TspGWI ACGGA 2 cut(s) 242, 1363
TspRI CASTG 4 cut(s) 205, 280, 808, 1088
Tth111I GACNNNGTC 1 cut(s) 532
Van91I CCANNNNNTGG 1 cut(s) 865
VneI GTGCAC 1 cut(s) 1019
VpaK11BI GGWCC 1 cut(s) 708
XapI RAATTY 1 cut(s) 762
XbaI TCTAGA 1 cut(s) 289
XceI RCATGY 1 cut(s) 370
XspI CTAG 4 cut(s) 68, 74, 290, 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.