Rh4CG162300

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0001515
Physical Location & Seq
Forward (+)
35632800 .. 35636149
3350 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG162300.1

Sequence Viewer

Length: 1551 bp
ATGAGCATCTACTCTTACAAGCATTCCAAAAGCATATATAGCCAGTCCATTCATACAGTAATCCCAAAAGCAAAAAATCAAAGAATTTCAGAGATGGGTTGTGATAAGGAACACATGGTGATGCTACCATTCTTGGCTCAAGGCCATCTGATTCCGTTCCTAGCCCTAGCCAAGCAAATCCAGCACAGAACAGGGTTCACCATCACCATCGCCACCACCGCCCTCAACGCCCATTACCTTCGGTCTGCTCAACCCAACACCAACATCCACTTGGCCGAGCTTCCCTTCCGCAGCGAAGACTATGGCCTCCCGCCCAACACAGAGAACATACCTCTCAACGTAGTCGGAAACCTCTTCACTGCATCGCAACATCTCGAAGCTCCGACTCGCCGCCTTGTCTCGGACATCACCGAAAAAGAAGGCAAGCCGCCGCTTTGCTTAATCTCCGACGTGTTTTTTGGGTGGGCTGTGAATGTAGCGAAAAGCTTCGGCACCGTCAACGTCGCTTTCACCACCGGTGGGGCTTACGGCACGGCGGCTTACGTGTCCATCTGGCAACATCTCCCGCATCGTAGTGTGTCTTCAGACGACGAGGAGTTCCACCTTCCGGGGTTCCCGGAACGGTGTCGTTTGACACCGTCTCACCTGCATCCGTTTTTGAGAGCCGCCGACGGTACTGATTCTTGGTCGAGATATTTCCAGCCACAGATCTCGCTCTCGATGAAGTCTTTTGGTTGCATATGCAACACCATTGAGGAAATTGAGCCGTTCGGATTGGAAGTGTTGCGAAATTACCTTTTGGTTCCTGTTTGGTCTGTCTTGGCTTCCAATATTTCCAGCCAAAAATATTCCGGGAAGAAATCCGGAATTTCGGCTGAGAAATGTATTGAGTGGCTCGACTCGCACGCTTCCGATTCGGTGGTGTATATCTCGTTCGGTTCTCAGAACACGATCAGTGCCTCCCAGATGATAGAATTGGCCAAAGGATTGGAAAAGAGCGGGAAGCCTTTTGTCTGGGTCATAAGGCCGCCGGTGGGTCACGACTTGAAGGGCGAGTTCCGACCGGAGTGGCTGCCGGAGCGTTTCGAGGAACGAATGAGGGAGACGAAGCAGGGGTTATTGGTGAACAACTGGGCATCGCAGCTGGAGATTCTGTCGCACGAGGCGACGCGAGCGTTTGTGAGTCACTGCGGGTGGAACTCGGTGGTGGAGAGCTTGAGCAGAGGGGTGCCGATCATCGGGTGGCCGCTGGCGGCGGAGCAGGCGTATAACTCAAAGATGTTGGTGGAGGAGATGGGCGTGAGTGTGGAGCTGACGAGGGGTGTGAAGAGTAATGTGGAGGCGGAGGAGGTGAGGAGAGTGATTGAGTTGGTGGTGGACGAGAGTGGGGAAGGTGGTGAGATGAGGAGAAGAGCTGGTGAGATTATGGAGAAGATAAGAGGAGCTGTAGGGGAGGATGGTGAAGCAAAGGGGTCTTCCCTTAAAGCTATAGATGATTTTGTTTCTGAACTTCATTCACAGGGAGAAGGAAGAGGATCCAAAATTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

516

Amino Acids

57.34

Weight (kDa)

6.16

Isoelectric Point (pI)

47.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 296 - 440 1e-20 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 654
Acc36I ACCTGC 1 cut(s) 654
AccB1I GGYRCC 2 cut(s) 491, 1228
AccBSI CCGCTC 1 cut(s) 999
AccII CGCG 1 cut(s) 1171
AccIII TCCGGA 1 cut(s) 863
AclWI GGATC 2 cut(s) 1530, 1543
AcoI YGGCCR 3 cut(s) 273, 978, 1244
AcsI RAATTY 3 cut(s) 84, 867, 1542
AcuI CTGAAG 1 cut(s) 567
AdeI CACNNNGTG 1 cut(s) 118
AfaI GTAC 1 cut(s) 676
AfiI CCNNNNNNNGG 5 cut(s) 400, 519, 607, 1034, 1238
AflIII ACRYGT 2 cut(s) 450, 543
AgeI ACCGGT 1 cut(s) 515
AgsI TTSAA 1 cut(s) 1048
AjiI CACGTC 1 cut(s) 451
AluBI AGCT 9 cut(s) 280, 380, 486, 1144, 1215, 1312, 1415, 1445, 1487
AluI AGCT 9 cut(s) 280, 380, 486, 1144, 1215, 1312, 1415, 1445, 1487
Alw26I GTCTC 3 cut(s) 403, 645, 1097
AlwI GGATC 2 cut(s) 1530, 1543
Aor13HI TCCGGA 1 cut(s) 863
AoxI GGCC 6 cut(s) 142, 273, 304, 978, 1025, 1244
ApeKI GCWGC 3 cut(s) 291, 1072, 1141
ApoI RAATTY 3 cut(s) 84, 867, 1542
ArsI GACNNNNNNTTYG 2 cut(s) 440, 472
AsiGI ACCGGT 1 cut(s) 515
Asp700I GAANNNNTTC 1 cut(s) 485
AsuC2I CCSGG 3 cut(s) 609, 617, 853
BalI TGGCCA 1 cut(s) 980
BamHI GGATCC 1 cut(s) 1535
BanI GGYRCC 2 cut(s) 491, 1228
BarI GAAGNNNNNNTAC 2 cut(s) 565, 597
BauI CACGAG 1 cut(s) 1160
BbsI GAAGAC 3 cut(s) 303, 573, 1467
BbvI GCAGC 3 cut(s) 303, 1059, 1153
BccI CCATC 7 cut(s) 88, 153, 209, 215, 557, 1288, 1451
BceAI ACGGC 3 cut(s) 544, 549, 751
BcnI CCSGG 3 cut(s) 609, 617, 853
BcoDI GTCTC 3 cut(s) 403, 645, 1097
BfaI CTAG 2 cut(s) 161, 167
BfmI CTRYAG 2 cut(s) 1446, 1488
BfuAI ACCTGC 1 cut(s) 654
BglII AGATCT 1 cut(s) 708
Bme1390I CCNGG 3 cut(s) 609, 617, 853
BmgBI CACGTC 1 cut(s) 451
BmiI GGNNCC 5 cut(s) 493, 614, 804, 1230, 1537
BmrFI CCNGG 3 cut(s) 609, 617, 853
BmrI ACTGGG 1 cut(s) 1141
BmsI GCATC 6 cut(s) 15, 111, 371, 577, 658, 1145
BmuI ACTGGG 1 cut(s) 1141
BpiI GAAGAC 3 cut(s) 303, 573, 1467
BpmI CTGGAG 1 cut(s) 1166
BpuEI CTTGAG 2 cut(s) 123, 1237
BpuMI CCSGG 3 cut(s) 609, 617, 853
BsaAI YACGTR 1 cut(s) 544
BsaJI CCNNGG 1 cut(s) 608
BsaWI WCCGGW 3 cut(s) 515, 863, 1063
BsaXI ACNNNNNCTCC 4 cut(s) 1139, 1169, 1250, 1280
Bsc4I CCNNNNNNNGG 5 cut(s) 400, 519, 607, 1034, 1238
Bse118I RCCGGY 2 cut(s) 515, 1030
Bse1I ACTGG 2 cut(s) 43, 1136
BseAI TCCGGA 1 cut(s) 863
BseDI CCNNGG 1 cut(s) 608
BseGI GGATG 3 cut(s) 264, 649, 1462
BseLI CCNNNNNNNGG 5 cut(s) 400, 519, 607, 1034, 1238
BseMII CTCAG 2 cut(s) 867, 956
BseNI ACTGG 2 cut(s) 43, 1136
BseRI GAGGAG 6 cut(s) 608, 1304, 1361, 1369, 1420, 1455
BseXI GCAGC 3 cut(s) 303, 1059, 1153
Bsh1236I CGCG 1 cut(s) 1171
Bsh1285I CGRYCG 1 cut(s) 1064
BshFI GGCC 6 cut(s) 144, 275, 306, 980, 1027, 1246
BshNI GGYRCC 2 cut(s) 491, 1228
BshTI ACCGGT 1 cut(s) 515
BsiEI CGRYCG 1 cut(s) 1064
BsiSI CCGG 8 cut(s) 516, 608, 617, 852, 864, 1031, 1064, 1076
BslI CCNNNNNNNGG 5 cut(s) 400, 519, 607, 1034, 1238
BsmAI GTCTC 3 cut(s) 403, 645, 1097
BsmBI CGTCTC 2 cut(s) 645, 1097
BsmI GAATGC 1 cut(s) 22
BsnI GGCC 6 cut(s) 144, 275, 306, 980, 1027, 1246
Bsp13I TCCGGA 1 cut(s) 863
Bsp143I GATC 4 cut(s) 708, 951, 1233, 1535
BspANI GGCC 6 cut(s) 144, 275, 306, 980, 1027, 1246
BspCNI CTCAG 2 cut(s) 868, 955
BspEI TCCGGA 1 cut(s) 863
BspFNI CGCG 1 cut(s) 1171
BspLI GGNNCC 5 cut(s) 493, 614, 804, 1230, 1537
BspMI ACCTGC 1 cut(s) 654
BspPI GGATC 2 cut(s) 1530, 1543
BspQI GCTCTTC 1 cut(s) 1405
BspT107I GGYRCC 2 cut(s) 491, 1228
BsrBI CCGCTC 1 cut(s) 999
BsrFI RCCGGY 2 cut(s) 515, 1030
BsrI ACTGG 2 cut(s) 43, 1136
BssAI RCCGGY 2 cut(s) 515, 1030
BssECI CCNNGG 1 cut(s) 608
BssMI GATC 4 cut(s) 708, 951, 1233, 1535
BssSI CACGAG 1 cut(s) 1160
Bst2BI CACGAG 1 cut(s) 1160
Bst4CI ACNGT 5 cut(s) 58, 496, 624, 639, 674
Bst6I CTCTTC 4 cut(s) 359, 1322, 1405, 1525
BstBAI YACGTR 1 cut(s) 544
BstC8I GCNNGC 5 cut(s) 425, 906, 1173, 1251, 1263
BstDEI CTNAG 2 cut(s) 876, 942
BstF5I GGATG 3 cut(s) 264, 649, 1462
BstFNI CGCG 1 cut(s) 1171
BstKTI GATC 4 cut(s) 711, 954, 1236, 1538
BstMAI GTCTC 3 cut(s) 403, 645, 1097
BstMBI GATC 4 cut(s) 708, 951, 1233, 1535
BstMCI CGRYCG 1 cut(s) 1064
BstMWI GCNNNNNNNGC 8 cut(s) 39, 181, 218, 227, 901, 1078, 1172, 1262
BstSCI CCNGG 3 cut(s) 607, 615, 851
BstSFI CTRYAG 2 cut(s) 1446, 1488
BstUI CGCG 1 cut(s) 1171
BstV1I GCAGC 3 cut(s) 303, 1059, 1153
BstV2I GAAGAC 3 cut(s) 303, 573, 1467
BstX2I RGATCY 2 cut(s) 708, 1535
BstXI CCANNNNNNTGG 1 cut(s) 988
BstYI RGATCY 2 cut(s) 708, 1535
BsuRI GGCC 6 cut(s) 144, 275, 306, 980, 1027, 1246
BtgZI GCGATG 3 cut(s) 193, 348, 1122
BtrI CACGTC 1 cut(s) 451
BtsCI GGATG 3 cut(s) 264, 649, 1462
BtsI GCAGTG 2 cut(s) 357, 1186
BtsIMutI CAGTG 3 cut(s) 357, 961, 1186
BveI ACCTGC 1 cut(s) 654
Cac8I GCNNGC 5 cut(s) 425, 906, 1173, 1251, 1263
Cfr10I RCCGGY 2 cut(s) 515, 1030
CseI GACGC 1 cut(s) 1177
Csp6I GTAC 1 cut(s) 675
CspAI ACCGGT 1 cut(s) 515
CviAII CATG 1 cut(s) 115
CviQI GTAC 1 cut(s) 675
DdeI CTNAG 2 cut(s) 876, 942
DpnI GATC 4 cut(s) 710, 953, 1235, 1537
DpnII GATC 4 cut(s) 708, 951, 1233, 1535
DraIII CACNNNGTG 1 cut(s) 118
EaeI YGGCCR 3 cut(s) 273, 978, 1244
Eam1104I CTCTTC 4 cut(s) 359, 1322, 1405, 1525
EarI CTCTTC 4 cut(s) 359, 1322, 1405, 1525
EciI GGCGGA 2 cut(s) 1271, 1358
Eco57I CTGAAG 1 cut(s) 567
Esp3I CGTCTC 2 cut(s) 645, 1097
FaeI CATG 1 cut(s) 118
FatI CATG 1 cut(s) 114
FauI CCCGC 4 cut(s) 318, 573, 992, 1184
FauNDI CATATG 1 cut(s) 740
FokI GGATG 3 cut(s) 251, 636, 1469
FspBI CTAG 2 cut(s) 161, 167
GsuI CTGGAG 1 cut(s) 1166
HaeIII GGCC 6 cut(s) 144, 275, 306, 980, 1027, 1246
HapII CCGG 8 cut(s) 516, 608, 617, 852, 864, 1031, 1064, 1076
HgaI GACGC 1 cut(s) 1177
Hin1II CATG 1 cut(s) 118
HincII GTYRAC 1 cut(s) 499
HindII GTYRAC 1 cut(s) 499
HindIII AAGCTT 1 cut(s) 484
HinfI GANTC 7 cut(s) 151, 385, 680, 899, 914, 1150, 1183
HpaII CCGG 8 cut(s) 516, 608, 617, 852, 864, 1031, 1064, 1076
Hpy166II GTNNAC 4 cut(s) 198, 499, 1126, 1378
Hpy188III TCNNGA 5 cut(s) 374, 690, 718, 864, 1040
Hpy8I GTNNAC 4 cut(s) 198, 499, 1126, 1378
Hpy99I CGWCG 5 cut(s) 452, 506, 593, 674, 1171
HpyAV CCTTC 7 cut(s) 248, 295, 413, 614, 1042, 1385, 1520
HpyCH4III ACNGT 5 cut(s) 58, 496, 624, 639, 674
HpyCH4IV ACGT 4 cut(s) 339, 450, 501, 543
HpyCH4V TGCA 4 cut(s) 362, 649, 738, 744
HpyF10VI GCNNNNNNNGC 8 cut(s) 39, 181, 218, 227, 901, 1078, 1172, 1262
HpyF3I CTNAG 2 cut(s) 876, 942
HpySE526I ACGT 4 cut(s) 339, 450, 501, 543
Hsp92II CATG 1 cut(s) 118
Kpn2I TCCGGA 1 cut(s) 863
Kzo9I GATC 4 cut(s) 708, 951, 1233, 1535
LguI GCTCTTC 1 cut(s) 1405
LmnI GCTCC 5 cut(s) 385, 1078, 1258, 1309, 1442
Lsp1109I GCAGC 3 cut(s) 303, 1059, 1153
LweI GCATC 6 cut(s) 15, 111, 371, 577, 658, 1145
MaeI CTAG 2 cut(s) 161, 167
MaeII ACGT 4 cut(s) 339, 450, 501, 543
MaeIII GTNAC 2 cut(s) 1037, 1184
MalI GATC 4 cut(s) 710, 953, 1235, 1537
MbiI CCGCTC 1 cut(s) 999
MboI GATC 4 cut(s) 708, 951, 1233, 1535
MboII GAAGA 9 cut(s) 308, 346, 573, 868, 1339, 1422, 1444, 1467, 1542
MflI RGATCY 2 cut(s) 708, 1535
MlsI TGGCCA 1 cut(s) 980
MluCI AATT 6 cut(s) 84, 759, 790, 867, 974, 1542
MluNI TGGCCA 1 cut(s) 980
MlyI GAGTC 3 cut(s) 379, 893, 1192
MmeI TCCRAC 4 cut(s) 325, 407, 471, 1084
Mox20I TGGCCA 1 cut(s) 980
MroI TCCGGA 1 cut(s) 863
MroXI GAANNNNTTC 1 cut(s) 485
MscI TGGCCA 1 cut(s) 980
MseI TTAA 2 cut(s) 440, 1482
MslI CAYNNNNRTG 2 cut(s) 119, 573
Msp20I TGGCCA 1 cut(s) 980
MspA1I CMGCKG 2 cut(s) 1144, 1249
MspI CCGG 8 cut(s) 516, 608, 617, 852, 864, 1031, 1064, 1076
MspR9I CCNGG 3 cut(s) 609, 617, 853
Mva1269I GAATGC 1 cut(s) 22
MvnI CGCG 1 cut(s) 1171
MwoI GCNNNNNNNGC 8 cut(s) 39, 181, 218, 227, 901, 1078, 1172, 1262
NciI CCSGG 3 cut(s) 609, 617, 853
NdeI CATATG 1 cut(s) 740
NdeII GATC 4 cut(s) 708, 951, 1233, 1535
NlaIII CATG 1 cut(s) 118
NlaIV GGNNCC 5 cut(s) 493, 614, 804, 1230, 1537
NmeAIII GCCGAG 1 cut(s) 301
NmuCI GTSAC 2 cut(s) 1037, 1184
PaqCI CACCTGC 1 cut(s) 654
PciSI GCTCTTC 1 cut(s) 1405
PcsI WCGNNNNNNNCGW 1 cut(s) 1163
PctI GAATGC 1 cut(s) 22
PdmI GAANNNNTTC 1 cut(s) 485
PfeI GAWTC 4 cut(s) 151, 680, 914, 1150
PflFI GACNNNGTC 1 cut(s) 637
PfoI TCCNGGA 2 cut(s) 615, 851
PinAI ACCGGT 1 cut(s) 515
PleI GAGTC 3 cut(s) 379, 893, 1191
PpsI GAGTC 3 cut(s) 379, 893, 1191
Ppu21I YACGTR 1 cut(s) 544
PspN4I GGNNCC 5 cut(s) 493, 614, 804, 1230, 1537
PsrI GAACNNNNNNTAC 2 cut(s) 917, 949
PsuI RGATCY 2 cut(s) 708, 1535
PsyI GACNNNGTC 1 cut(s) 637
PvuII CAGCTG 1 cut(s) 1144
RsaI GTAC 1 cut(s) 676
RsaNI GTAC 1 cut(s) 675
RseI CAYNNNNRTG 2 cut(s) 119, 573
SapI GCTCTTC 1 cut(s) 1405
SaqAI TTAA 2 cut(s) 440, 1482
Sau3AI GATC 4 cut(s) 708, 951, 1233, 1535
SchI GAGTC 3 cut(s) 379, 893, 1192
ScrFI CCNGG 3 cut(s) 609, 617, 853
SfaNI GCATC 6 cut(s) 15, 111, 371, 577, 658, 1145
SfcI CTRYAG 2 cut(s) 1446, 1488
SgrAI CRCCGGYG 2 cut(s) 515, 1030
SmiMI CAYNNNNRTG 2 cut(s) 119, 573
SmlI CTYRAG 2 cut(s) 138, 1216
SmoI CTYRAG 2 cut(s) 138, 1216
Sse9I AATT 6 cut(s) 84, 759, 790, 867, 974, 1542
SspI AATATT 2 cut(s) 832, 848
SspMI CTAG 2 cut(s) 161, 167
StyD4I CCNGG 3 cut(s) 607, 615, 851
TaaI ACNGT 5 cut(s) 58, 496, 624, 639, 674
TaiI ACGT 4 cut(s) 342, 453, 504, 546
TaqI TCGA 5 cut(s) 375, 689, 719, 897, 1086
TaqII GACCGA 1 cut(s) 231
TasI AATT 6 cut(s) 84, 759, 790, 867, 974, 1542
TauI GCSGC 8 cut(s) 393, 430, 433, 539, 668, 1030, 1249, 1256
TfiI GAWTC 4 cut(s) 151, 680, 914, 1150
Tru1I TTAA 2 cut(s) 440, 1482
Tru9I TTAA 2 cut(s) 440, 1482
TscAI CASTG 3 cut(s) 364, 961, 1193
TseFI GTSAC 2 cut(s) 1037, 1184
TseI GCWGC 3 cut(s) 291, 1072, 1141
Tsp45I GTSAC 2 cut(s) 1037, 1184
TspDTI ATGAA 3 cut(s) 41, 737, 1502
TspGWI ACGGA 2 cut(s) 144, 642
TspRI CASTG 3 cut(s) 364, 961, 1193
Tth111I GACNNNGTC 1 cut(s) 637
XapI RAATTY 3 cut(s) 84, 867, 1542
XcmI CCANNNNNNNNNTGG 1 cut(s) 268
XmnI GAANNNNTTC 1 cut(s) 485
XspI CTAG 2 cut(s) 161, 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.