Rmu_ssc0000372.1_g000003

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000372.1
OG0001515
Physical Location & Seq
Forward (+)
9291 .. 9977
687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000372.1_g000003.1.cds

Sequence Viewer

Length: 687 bp
atgggttttgataaggaacacatagtgatgctaccattcttggctcaaggccatctgattccattcctagccctagccaatcaaatccagcacagaacagggttcaccatcaccatcgccaccaccgccctcaacgcccattaccttcggtctgctcaacccaacaccaacatccacttgaccgagcttcccttccgcagcgaagactatggcctcccacccaacacagagaacacagagaacatacctctcaacatagtcggagacctcttcactgcatcgcaacatctcgaagctccgactcgccgccttgtctcggacatcacccaaaaagaaggcaagccaccgctttgcataatctccgacgtgttttttgggtgggctgtgaatgtagctaaaagcttcggcaccgtcaacgtcgctttcaccaccggtggggcttacggcacggcggcgtacgtgtccatctggcaacatctcccgcatcgtagtgtgtcttcagacgacgaggagttccaccttccgggctttccggaacggtgtcgtttgacaccgtctcacttgcatccgtctttgagagccgccgacggtacggattcttggtcgagatatttcccgctgcagatcaatatgacggtacggattggaaaaaaccgactctatttgcttataggaaaggcatattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

228

Amino Acids

25.44

Weight (kDa)

6.83

Isoelectric Point (pI)

45.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 407
AccIII TCCGGA 1 cut(s) 532
AciI CCGC 8 cut(s) 126, 196, 307, 347, 452, 482, 582, 617
AcuI CTGAAG 1 cut(s) 483
AdeI CACNNNGTG 1 cut(s) 25
AfaI GTAC 3 cut(s) 458, 592, 639
AfiI CCNNNNNNNGG 3 cut(s) 316, 435, 523
AflIII ACRYGT 2 cut(s) 366, 459
AgeI ACCGGT 1 cut(s) 431
AjiI CACGTC 1 cut(s) 367
AluBI AGCT 4 cut(s) 187, 296, 395, 402
AluI AGCT 4 cut(s) 187, 296, 395, 402
Alw26I GTCTC 3 cut(s) 258, 319, 561
Aor13HI TCCGGA 1 cut(s) 532
AoxI GGCC 2 cut(s) 49, 211
ApeKI GCWGC 2 cut(s) 198, 619
ArsI GACNNNNNNTTYG 2 cut(s) 356, 388
AsiGI ACCGGT 1 cut(s) 431
AsuC2I CCSGG 1 cut(s) 525
AsuHPI GGTGA 4 cut(s) 97, 103, 316, 418
BanI GGYRCC 1 cut(s) 407
BarI GAAGNNNNNNTAC 2 cut(s) 481, 513
BbsI GAAGAC 2 cut(s) 210, 489
BbvI GCAGC 2 cut(s) 210, 606
BccI CCATC 4 cut(s) 60, 116, 122, 473
BceAI ACGGC 2 cut(s) 460, 465
BcnI CCSGG 1 cut(s) 525
BcoDI GTCTC 3 cut(s) 258, 319, 561
BfaI CTAG 2 cut(s) 68, 74
BfmI CTRYAG 1 cut(s) 620
BisI GCNGC 5 cut(s) 199, 307, 453, 582, 620
BlsI GCNGC 5 cut(s) 200, 308, 454, 583, 621
Bme1390I CCNGG 1 cut(s) 525
BmgBI CACGTC 1 cut(s) 367
BmiI GGNNCC 1 cut(s) 409
BmrFI CCNGG 1 cut(s) 525
BmsI GCATC 4 cut(s) 18, 287, 493, 574
BpiI GAAGAC 2 cut(s) 210, 489
BpuEI CTTGAG 1 cut(s) 30
BpuMI CCSGG 1 cut(s) 525
BsaAI YACGTR 1 cut(s) 460
BsaI GGTCTC 1 cut(s) 258
BsaWI WCCGGW 2 cut(s) 431, 532
Bsc4I CCNNNNNNNGG 3 cut(s) 316, 435, 523
Bse118I RCCGGY 1 cut(s) 431
BseAI TCCGGA 1 cut(s) 532
BseGI GGATG 2 cut(s) 171, 565
BseLI CCNNNNNNNGG 3 cut(s) 316, 435, 523
BseRI GAGGAG 1 cut(s) 524
BseXI GCAGC 2 cut(s) 210, 606
BshFI GGCC 2 cut(s) 51, 213
BshNI GGYRCC 1 cut(s) 407
BshTI ACCGGT 1 cut(s) 431
BsiSI CCGG 3 cut(s) 432, 524, 533
BsiWI CGTACG 1 cut(s) 456
BslI CCNNNNNNNGG 3 cut(s) 316, 435, 523
BsmAI GTCTC 3 cut(s) 258, 319, 561
BsmBI CGTCTC 1 cut(s) 561
BsnI GGCC 2 cut(s) 51, 213
Bso31I GGTCTC 1 cut(s) 258
Bsp13I TCCGGA 1 cut(s) 532
Bsp143I GATC 1 cut(s) 624
BspACI CCGC 8 cut(s) 126, 196, 307, 347, 452, 482, 582, 617
BspANI GGCC 2 cut(s) 51, 213
BspEI TCCGGA 1 cut(s) 532
BspLI GGNNCC 1 cut(s) 409
BspMAI CTGCAG 1 cut(s) 624
BspT107I GGYRCC 1 cut(s) 407
BspTNI GGTCTC 1 cut(s) 258
BsrFI RCCGGY 1 cut(s) 431
BssAI RCCGGY 1 cut(s) 431
BssMI GATC 1 cut(s) 624
Bst4CI ACNGT 5 cut(s) 412, 540, 555, 590, 637
Bst6I CTCTTC 1 cut(s) 275
BstBAI YACGTR 1 cut(s) 460
BstC8I GCNNGC 1 cut(s) 341
BstF5I GGATG 2 cut(s) 171, 565
BstKTI GATC 1 cut(s) 627
BstMAI GTCTC 3 cut(s) 258, 319, 561
BstMBI GATC 1 cut(s) 624
BstMWI GCNNNNNNNGC 2 cut(s) 125, 134
BstSCI CCNGG 1 cut(s) 523
BstSFI CTRYAG 1 cut(s) 620
BstV1I GCAGC 2 cut(s) 210, 606
BstV2I GAAGAC 2 cut(s) 210, 489
BsuRI GGCC 2 cut(s) 51, 213
BtgZI GCGATG 2 cut(s) 100, 264
BtrI CACGTC 1 cut(s) 367
BtsCI GGATG 2 cut(s) 171, 565
BtsI GCAGTG 1 cut(s) 273
BtsIMutI CAGTG 1 cut(s) 273
Cac8I GCNNGC 1 cut(s) 341
Cfr10I RCCGGY 1 cut(s) 431
Csp6I GTAC 3 cut(s) 457, 591, 638
CspAI ACCGGT 1 cut(s) 431
CviQI GTAC 3 cut(s) 457, 591, 638
DpnI GATC 1 cut(s) 626
DpnII GATC 1 cut(s) 624
DraIII CACNNNGTG 1 cut(s) 25
Eam1104I CTCTTC 1 cut(s) 275
EarI CTCTTC 1 cut(s) 275
Eco31I GGTCTC 1 cut(s) 258
Eco57I CTGAAG 1 cut(s) 483
Esp3I CGTCTC 1 cut(s) 561
FaiI YATR 8 cut(s) 23, 210, 245, 257, 356, 632, 671, 682
FauI CCCGC 2 cut(s) 489, 624
Fnu4HI GCNGC 5 cut(s) 199, 307, 453, 582, 620
FokI GGATG 2 cut(s) 158, 552
Fsp4HI GCNGC 5 cut(s) 199, 307, 453, 582, 620
FspBI CTAG 2 cut(s) 68, 74
GluI GCNGC 5 cut(s) 199, 307, 453, 582, 620
HaeIII GGCC 2 cut(s) 51, 213
HapII CCGG 3 cut(s) 432, 524, 533
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HindIII AAGCTT 1 cut(s) 400
HinfI GANTC 4 cut(s) 58, 301, 596, 657
HpaII CCGG 3 cut(s) 432, 524, 533
HphI GGTGA 4 cut(s) 97, 103, 316, 418
Hpy166II GTNNAC 2 cut(s) 105, 415
Hpy188I TCNGA 6 cut(s) 57, 263, 300, 319, 364, 502
Hpy188III TCNNGA 3 cut(s) 290, 533, 606
Hpy8I GTNNAC 2 cut(s) 105, 415
Hpy99I CGWCG 4 cut(s) 368, 422, 509, 590
HpyAV CCTTC 4 cut(s) 155, 202, 329, 530
HpyCH4III ACNGT 5 cut(s) 412, 540, 555, 590, 637
HpyCH4IV ACGT 3 cut(s) 366, 417, 459
HpyCH4V TGCA 4 cut(s) 278, 354, 565, 622
HpyF10VI GCNNNNNNNGC 2 cut(s) 125, 134
HpySE526I ACGT 3 cut(s) 366, 417, 459
Kpn2I TCCGGA 1 cut(s) 532
Kzo9I GATC 1 cut(s) 624
LmnI GCTCC 1 cut(s) 301
LpnPI CCDG 6 cut(s) 84, 101, 445, 454, 537, 546
Lsp1109I GCAGC 2 cut(s) 210, 606
LweI GCATC 4 cut(s) 18, 287, 493, 574
MaeI CTAG 2 cut(s) 68, 74
MaeII ACGT 3 cut(s) 366, 417, 459
MalI GATC 1 cut(s) 626
MboI GATC 1 cut(s) 624
MboII GAAGA 3 cut(s) 215, 262, 489
MlyI GAGTC 2 cut(s) 295, 651
MmeI TCCRAC 3 cut(s) 241, 323, 387
MnlI CCTC 5 cut(s) 140, 224, 258, 278, 502
MroI TCCGGA 1 cut(s) 532
MslI CAYNNNNRTG 2 cut(s) 26, 489
MspA1I CMGCKG 1 cut(s) 619
MspI CCGG 3 cut(s) 432, 524, 533
MspR9I CCNGG 1 cut(s) 525
MwoI GCNNNNNNNGC 2 cut(s) 125, 134
NciI CCSGG 1 cut(s) 525
NdeII GATC 1 cut(s) 624
NlaIV GGNNCC 1 cut(s) 409
PfeI GAWTC 2 cut(s) 58, 596
Pfl23II CGTACG 1 cut(s) 456
PflFI GACNNNGTC 1 cut(s) 553
PinAI ACCGGT 1 cut(s) 431
PkrI GCNGC 5 cut(s) 200, 308, 454, 583, 621
PleI GAGTC 2 cut(s) 295, 651
PpsI GAGTC 2 cut(s) 295, 651
Ppu21I YACGTR 1 cut(s) 460
PspLI CGTACG 1 cut(s) 456
PspN4I GGNNCC 1 cut(s) 409
PstI CTGCAG 1 cut(s) 624
PsyI GACNNNGTC 1 cut(s) 553
RsaI GTAC 3 cut(s) 458, 592, 639
RsaNI GTAC 3 cut(s) 457, 591, 638
RseI CAYNNNNRTG 2 cut(s) 26, 489
SatI GCNGC 5 cut(s) 199, 307, 453, 582, 620
Sau3AI GATC 1 cut(s) 624
SchI GAGTC 2 cut(s) 295, 651
ScrFI CCNGG 1 cut(s) 525
SfaNI GCATC 4 cut(s) 18, 287, 493, 574
SfcI CTRYAG 1 cut(s) 620
SgrAI CRCCGGYG 1 cut(s) 431
SmiMI CAYNNNNRTG 2 cut(s) 26, 489
SmlI CTYRAG 1 cut(s) 45
SmoI CTYRAG 1 cut(s) 45
SsiI CCGC 8 cut(s) 126, 196, 307, 347, 452, 482, 582, 617
SspMI CTAG 2 cut(s) 68, 74
StyD4I CCNGG 1 cut(s) 523
TaaI ACNGT 5 cut(s) 412, 540, 555, 590, 637
TaiI ACGT 3 cut(s) 369, 420, 462
TaqI TCGA 2 cut(s) 291, 605
TaqII GACCGA 2 cut(s) 138, 197
TauI GCSGC 3 cut(s) 309, 455, 584
TfiI GAWTC 2 cut(s) 58, 596
TscAI CASTG 1 cut(s) 280
TseI GCWGC 2 cut(s) 198, 619
TspGWI ACGGA 3 cut(s) 558, 608, 655
TspRI CASTG 1 cut(s) 280
Tth111I GACNNNGTC 1 cut(s) 553
XspI CTAG 2 cut(s) 68, 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.