Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0001515

Physical Location & Seq

Genomic Coordinates Forward (+)

3296472 .. 3296888

Gene Structure 417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1029000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGAAAGCCAAGACCAAGAGCACATTGTGATGCTGCCATTCATGGCTCAAGGCCATCTAATATCATTCCTGCAACTGGCAAGAAATCTCCAACAGAGAAAAAGCTTGATCACTGTCACCGTCGCAAGCACCGCACTCAACTTCCAATACCTCCACACAACGATCGCCTCCAACTCAAGCTCTCAATCTGACTCCAACATCCGTTTGGCTAAGCTCTCATTCTGCAGCACAGACCACGGCTTGCCCCCGTACGGCGAGAACACGGAGAACTTGCCTCTCAGCAAAATAGGAAACCTAGGCGCTGCATCAACGAGTCTTGAATCTCCTACTCACCGCTTTATCTCTGATATCATCGAAAAAGAAGGTCGCCCGCCGCTCTGTATTATCTCTGATATGTACTTTGGATGGGGCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

139

Amino Acids

15.23

Weight (kDa)

5.89

Isoelectric Point (pI)

50.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12890
fragaria_vesca	FvH4_4g11780 FvH4_4g11780 FvH4_4g11780 FvH4_4g11780
malus_domestica	MD04G1029000.v1.1 MD04G1029200.v1.1 MD04G1029700.v1.1 MD04G1030200.v1.1 MD04G1033400.v1.1 MD04G1033500.v1.1 MD04G1033600.v1.1 MD11G1021900.v1.1 MD11G1022200.v1.1
prunus_persica	Prupe.1G179000_v2.0.a1 Prupe.1G179400_v2.0.a1 Prupe.1G179700_v2.0.a1 Prupe.1G180900_v2.0.a1 Prupe.1G181000_v2.0.a1 Prupe.6G015900_v2.0.a1
pyrus_communis	pycom04g02540 pycom04g02770 pycom04g02790 pycom04g02800 pycom04g02810
rosa_chinensis	RchiOBHm_Chr0c23g0500711 RchiOBHm_Chr0c23g0500721 RchiOBHm_Chr0c23g0500731 RchiOBHm_Chr4g0409041 RchiOBHm_Chr4g0409101 RchiOBHm_Chr4g0409111
rosa_laevigata	RLG00000008592
rosa_multiflora	Rmu_sc0001669.1_g000053 Rmu_sc0004120.1_g000015 Rmu_sc0005470.1_g000002 Rmu_sc0012282.1_g000001 Rmu_sc0016242.1_g000001 Rmu_ssc0000372.1_g000003 Rmu_ssc0000372.1_g000004 Rmu_ssc0000372.1_g000045
rosa_roxburghii	Rroxscaffold_5G00353510
rosa_rugosa	Rorug04G0090100 Rorug04G0090400
rosa_samantha	Rh4BG151800 Rh4BG152000 Rh4CG162300 Rh4CG163000 Rh4CG163100 Rh4CG163500 Rh4DG147100 Rh4DG147300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	376
AciI	CCGC	4 cut(s)	132, 334, 371, 374
AdeI	CACNNNGTG	1 cut(s)	28
AfaI	GTAC	2 cut(s)	251, 398
AfiI	CCNNNNNNNGG	2 cut(s)	76, 251
AgsI	TTSAA	1 cut(s)	320
AluBI	AGCT	3 cut(s)	105, 180, 214
AluI	AGCT	3 cut(s)	105, 180, 214
Alw21I	GWGCWC	1 cut(s)	24
AoxI	GGCC	1 cut(s)	52
ApeKI	GCWGC	4 cut(s)	34, 225, 302, 411
AspA2I	CCTAGG	1 cut(s)	295
AspLEI	GCGC	1 cut(s)	302
AsuHPI	GGTGA	2 cut(s)	109, 323
AvrII	CCTAGG	1 cut(s)	295
Bbv12I	GWGCWC	1 cut(s)	24
BbvI	GCAGC	4 cut(s)	21, 237, 289, 398
BccI	CCATC	2 cut(s)	63, 399
BceAI	ACGGC	2 cut(s)	253, 268
BclI	TGATCA	1 cut(s)	108
BfaI	CTAG	1 cut(s)	296
BfmI	CTRYAG	1 cut(s)	223
BfoI	RGCGCY	1 cut(s)	303
BisI	GCNGC	5 cut(s)	35, 226, 303, 374, 412
BlnI	CCTAGG	1 cut(s)	295
BlpI	GCTNAGC	1 cut(s)	210
BlsI	GCNGC	5 cut(s)	36, 227, 304, 375, 413
BmsI	GCATC	2 cut(s)	21, 314
Bpu1102I	GCTNAGC	1 cut(s)	210
BpuEI	CTTGAG	2 cut(s)	33, 160
BsaJI	CCNNGG	2 cut(s)	235, 295
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 251
Bse1I	ACTGG	1 cut(s)	81
BseDI	CCNNGG	2 cut(s)	235, 295
BseGI	GGATG	2 cut(s)	198, 410
BseLI	CCNNNNNNNGG	2 cut(s)	76, 251
BseMII	CTCAG	1 cut(s)	292
BseNI	ACTGG	1 cut(s)	81
BseXI	GCAGC	4 cut(s)	21, 237, 289, 398
Bsh1285I	CGRYCG	1 cut(s)	165
BshFI	GGCC	1 cut(s)	54
BsiEI	CGRYCG	1 cut(s)	165
BsiHKAI	GWGCWC	1 cut(s)	24
BsiWI	CGTACG	1 cut(s)	249
BslI	CCNNNNNNNGG	2 cut(s)	76, 251
BsnI	GGCC	1 cut(s)	54
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp143I	GATC	2 cut(s)	108, 162
Bsp1720I	GCTNAGC	1 cut(s)	210
BspACI	CCGC	4 cut(s)	132, 334, 371, 374
BspANI	GGCC	1 cut(s)	54
BspCNI	CTCAG	1 cut(s)	291
BspMAI	CTGCAG	1 cut(s)	227
BsrBI	CCGCTC	1 cut(s)	376
BsrI	ACTGG	1 cut(s)	81
BssECI	CCNNGG	2 cut(s)	235, 295
BssMI	GATC	2 cut(s)	108, 162
BssT1I	CCWWGG	1 cut(s)	295
Bst4CI	ACNGT	2 cut(s)	115, 121
BstC8I	GCNNGC	3 cut(s)	127, 242, 371
BstDEI	CTNAG	2 cut(s)	210, 278
BstDSI	CCRYGG	1 cut(s)	235
BstF5I	GGATG	2 cut(s)	198, 410
BstH2I	RGCGCY	1 cut(s)	303
BstHHI	GCGC	1 cut(s)	302
BstKTI	GATC	2 cut(s)	111, 165
BstMBI	GATC	2 cut(s)	108, 162
BstMCI	CGRYCG	1 cut(s)	165
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstSFI	CTRYAG	1 cut(s)	223
BstV1I	GCAGC	4 cut(s)	21, 237, 289, 398
BsuRI	GGCC	1 cut(s)	54
BtgI	CCRYGG	1 cut(s)	235
BtsCI	GGATG	2 cut(s)	198, 410
BtsIMutI	CAGTG	1 cut(s)	111
Cac8I	GCNNGC	3 cut(s)	127, 242, 371
CfoI	GCGC	1 cut(s)	302
Csp6I	GTAC	2 cut(s)	250, 397
CviAII	CATG	1 cut(s)	43
CviJI	RGCY	9 cut(s)	9, 47, 54, 105, 180, 209, 214, 240, 411
CviKI_1	RGCY	9 cut(s)	9, 47, 54, 105, 180, 209, 214, 240, 411
CviQI	GTAC	2 cut(s)	250, 397
DdeI	CTNAG	2 cut(s)	210, 278
DpnI	GATC	2 cut(s)	110, 164
DpnII	GATC	2 cut(s)	108, 162
DraIII	CACNNNGTG	1 cut(s)	28
Eco130I	CCWWGG	1 cut(s)	295
Eco32I	GATATC	1 cut(s)	349
EcoRV	GATATC	1 cut(s)	349
EcoT14I	CCWWGG	1 cut(s)	295
ErhI	CCWWGG	1 cut(s)	295
FaeI	CATG	1 cut(s)	46
FaiI	YATR	2 cut(s)	44, 395
FatI	CATG	1 cut(s)	42
FauI	CCCGC	1 cut(s)	378
FbaI	TGATCA	1 cut(s)	108
Fnu4HI	GCNGC	5 cut(s)	35, 226, 303, 374, 412
FokI	GGATG	1 cut(s)	185
Fsp4HI	GCNGC	5 cut(s)	35, 226, 303, 374, 412
FspBI	CTAG	1 cut(s)	296
GlaI	GCGC	1 cut(s)	301
GluI	GCNGC	5 cut(s)	35, 226, 303, 374, 412
HaeII	RGCGCY	1 cut(s)	303
HaeIII	GGCC	1 cut(s)	54
HhaI	GCGC	1 cut(s)	302
Hin1II	CATG	1 cut(s)	46
Hin6I	GCGC	1 cut(s)	300
HinP1I	GCGC	1 cut(s)	300
HindIII	AAGCTT	1 cut(s)	103
HinfI	GANTC	3 cut(s)	191, 313, 320
HphI	GGTGA	2 cut(s)	109, 323
Hpy188I	TCNGA	3 cut(s)	190, 346, 391
Hpy188III	TCNNGA	1 cut(s)	317
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	1 cut(s)	356
HpyCH4III	ACNGT	2 cut(s)	115, 121
HpyCH4V	TGCA	3 cut(s)	73, 225, 305
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpyF3I	CTNAG	2 cut(s)	210, 278
Hsp92II	CATG	1 cut(s)	46
HspAI	GCGC	1 cut(s)	300
Ksp22I	TGATCA	1 cut(s)	108
Kzo9I	GATC	2 cut(s)	108, 162
LpnPI	CCDG	2 cut(s)	62, 83
Lsp1109I	GCAGC	4 cut(s)	21, 237, 289, 398
LweI	GCATC	2 cut(s)	21, 314
MaeI	CTAG	1 cut(s)	296
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	2 cut(s)	110, 164
MbiI	CCGCTC	1 cut(s)	376
MboI	GATC	2 cut(s)	108, 162
MhlI	GDGCHC	1 cut(s)	24
MlyI	GAGTC	2 cut(s)	185, 322
MmeI	TCCRAC	3 cut(s)	115, 195, 219
MnlI	CCTC	3 cut(s)	161, 178, 285
MslI	CAYNNNNRTG	1 cut(s)	29
MwoI	GCNNNNNNNGC	1 cut(s)	131
NdeII	GATC	2 cut(s)	108, 162
NlaIII	CATG	1 cut(s)	46
NmuCI	GTSAC	1 cut(s)	115
PfeI	GAWTC	1 cut(s)	320
Pfl23II	CGTACG	1 cut(s)	249
PkrI	GCNGC	5 cut(s)	36, 227, 304, 375, 413
Ple19I	CGATCG	1 cut(s)	165
PleI	GAGTC	2 cut(s)	185, 321
PpsI	GAGTC	2 cut(s)	185, 321
PspLI	CGTACG	1 cut(s)	249
PstI	CTGCAG	1 cut(s)	227
PvuI	CGATCG	1 cut(s)	165
RsaI	GTAC	2 cut(s)	251, 398
RsaNI	GTAC	2 cut(s)	250, 397
RseI	CAYNNNNRTG	1 cut(s)	29
SatI	GCNGC	5 cut(s)	35, 226, 303, 374, 412
Sau3AI	GATC	2 cut(s)	108, 162
SchI	GAGTC	2 cut(s)	185, 322
SduI	GDGCHC	1 cut(s)	24
SetI	ASST	6 cut(s)	107, 153, 182, 216, 297, 367
SfaNI	GCATC	2 cut(s)	21, 314
SfcI	CTRYAG	1 cut(s)	223
SmiMI	CAYNNNNRTG	1 cut(s)	29
SmlI	CTYRAG	2 cut(s)	48, 175
SmoI	CTYRAG	2 cut(s)	48, 175
SsiI	CCGC	4 cut(s)	132, 334, 371, 374
SspMI	CTAG	1 cut(s)	296
StyI	CCWWGG	1 cut(s)	295
TaaI	ACNGT	2 cut(s)	115, 121
TaqI	TCGA	1 cut(s)	354
TatI	WGTACW	1 cut(s)	396
TauI	GCSGC	1 cut(s)	376
TfiI	GAWTC	1 cut(s)	320
TscAI	CASTG	1 cut(s)	118
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	4 cut(s)	34, 225, 302, 411
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	1 cut(s)	31
TspGWI	ACGGA	2 cut(s)	191, 278
TspRI	CASTG	1 cut(s)	118
XcmI	CCANNNNNNNNNTGG	1 cut(s)	202
XmaJI	CCTAGG	1 cut(s)	295
XspI	CTAG	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.