MD04G1033400.v1.1

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0001515
Physical Location & Seq
Forward (+)
3774851 .. 3775162
312 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1033400.v1.1.491

Sequence Viewer

Length: 312 bp
ATGATGGAATTGACTGTTGGGTTGGAAGAAATCGGAAAGCCTTTTGTTTGGGTCATAAGGCCTCCGGTGGGGTTTGATGTGAAGGGAGACTTCAAAGCAGAGTGGCTGCCTGACGGGTTTGAGGAAAGAATGAGTAAACGAAAACAGGGGTTGCTAGTGCACAACTGGGCACCCCAGTTGGAGATTTTGTCATACAAATCCACTGGGTTTTTTGTGAGCCATTGCGGGTGGAATTCAGTGATGGAGAGCTTGAGCCAGGGCGTGCCGATTGTGGGGTGGCCGTTGGCGGCGGAGCAGGCTTACAATTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

104

Amino Acids

11.63

Weight (kDa)

5.28

Isoelectric Point (pI)

45.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 2 - 102 9.5e-15 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 169
AciI CCGC 3 cut(s) 225, 287, 290
AcoI YGGCCR 1 cut(s) 278
AcsI RAATTY 1 cut(s) 232
AfiI CCNNNNNNNGG 2 cut(s) 68, 272
AgsI TTSAA 1 cut(s) 94
AjnI CCWGG 1 cut(s) 255
AjuI GAANNNNNNNTTGG 1 cut(s) 32
AluBI AGCT 1 cut(s) 249
AluI AGCT 1 cut(s) 249
Alw21I GWGCWC 1 cut(s) 162
Alw26I GTCTC 1 cut(s) 81
Alw44I GTGCAC 1 cut(s) 158
AoxI GGCC 2 cut(s) 59, 278
ApaLI GTGCAC 1 cut(s) 158
ApeKI GCWGC 1 cut(s) 106
ApoI RAATTY 1 cut(s) 232
BaeGI GKGCMC 2 cut(s) 162, 172
BanI GGYRCC 1 cut(s) 169
Bbv12I GWGCWC 1 cut(s) 162
BbvI GCAGC 1 cut(s) 93
BccI CCATC 1 cut(s) 235
BceAI ACGGC 1 cut(s) 265
BciT130I CCWGG 1 cut(s) 257
BcoDI GTCTC 1 cut(s) 81
BfaI CTAG 1 cut(s) 155
BisI GCNGC 2 cut(s) 107, 288
BlsI GCNGC 2 cut(s) 108, 289
Bme1390I CCNGG 1 cut(s) 257
BmiI GGNNCC 1 cut(s) 171
BmrFI CCNGG 1 cut(s) 257
BmrI ACTGGG 3 cut(s) 169, 175, 213
BmuI ACTGGG 3 cut(s) 169, 175, 213
BpuEI CTTGAG 1 cut(s) 271
BsaJI CCNNGG 1 cut(s) 256
BsaWI WCCGGW 1 cut(s) 64
BsaXI ACNNNNNCTCC 2 cut(s) 173, 203
Bsc4I CCNNNNNNNGG 2 cut(s) 68, 272
Bse1I ACTGG 3 cut(s) 170, 175, 208
Bse3DI GCAATG 1 cut(s) 220
BseBI CCWGG 1 cut(s) 257
BseDI CCNNGG 1 cut(s) 256
BseLI CCNNNNNNNGG 2 cut(s) 68, 272
BseMI GCAATG 1 cut(s) 220
BseNI ACTGG 3 cut(s) 170, 175, 208
BseSI GKGCMC 2 cut(s) 162, 172
BseXI GCAGC 1 cut(s) 93
BshFI GGCC 2 cut(s) 61, 280
BshNI GGYRCC 1 cut(s) 169
BsiHKAI GWGCWC 1 cut(s) 162
BsiSI CCGG 1 cut(s) 65
BslI CCNNNNNNNGG 2 cut(s) 68, 272
BsmAI GTCTC 1 cut(s) 81
BsnI GGCC 2 cut(s) 61, 280
Bsp1286I GDGCHC 2 cut(s) 162, 172
BspACI CCGC 3 cut(s) 225, 287, 290
BspANI GGCC 2 cut(s) 61, 280
BspLI GGNNCC 1 cut(s) 171
BspT107I GGYRCC 1 cut(s) 169
BsrDI GCAATG 1 cut(s) 220
BsrI ACTGG 3 cut(s) 170, 175, 208
BssECI CCNNGG 1 cut(s) 256
Bst2UI CCWGG 1 cut(s) 257
Bst4CI ACNGT 1 cut(s) 16
BstC8I GCNNGC 2 cut(s) 263, 297
BstMAI GTCTC 1 cut(s) 81
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstNI CCWGG 1 cut(s) 257
BstSCI CCNGG 1 cut(s) 255
BstSLI GKGCMC 2 cut(s) 162, 172
BstV1I GCAGC 1 cut(s) 93
BsuRI GGCC 2 cut(s) 61, 280
BtsIMutI CAGTG 2 cut(s) 201, 243
Cac8I GCNNGC 2 cut(s) 263, 297
CviJI RGCY 8 cut(s) 40, 61, 106, 219, 249, 255, 280, 299
CviKI_1 RGCY 8 cut(s) 40, 61, 106, 219, 249, 255, 280, 299
EaeI YGGCCR 1 cut(s) 278
EciI GGCGGA 1 cut(s) 305
Eco147I AGGCCT 1 cut(s) 61
EcoRI GAATTC 1 cut(s) 232
EcoRII CCWGG 1 cut(s) 255
FaiI YATR 2 cut(s) 56, 193
FalI AAGNNNNNCTT 2 cut(s) 74, 106
FauI CCCGC 1 cut(s) 218
Fnu4HI GCNGC 2 cut(s) 107, 288
Fsp4HI GCNGC 2 cut(s) 107, 288
FspBI CTAG 1 cut(s) 155
GluI GCNGC 2 cut(s) 107, 288
HaeIII GGCC 2 cut(s) 61, 280
HapII CCGG 1 cut(s) 65
HpaII CCGG 1 cut(s) 65
Hpy166II GTNNAC 2 cut(s) 137, 160
Hpy188I TCNGA 1 cut(s) 35
Hpy8I GTNNAC 2 cut(s) 137, 160
HpyAV CCTTC 1 cut(s) 76
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4V TGCA 1 cut(s) 160
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
LmnI GCTCC 1 cut(s) 292
LpnPI CCDG 9 cut(s) 78, 123, 131, 151, 188, 189, 242, 269, 281
Lsp1109I GCAGC 1 cut(s) 93
MaeI CTAG 1 cut(s) 155
MboII GAAGA 1 cut(s) 38
MhlI GDGCHC 2 cut(s) 162, 172
MluCI AATT 3 cut(s) 8, 232, 304
MmeI TCCRAC 1 cut(s) 159
MnlI CCTC 2 cut(s) 72, 115
MspI CCGG 1 cut(s) 65
MspR9I CCNGG 1 cut(s) 257
MvaI CCWGG 1 cut(s) 257
MwoI GCNNNNNNNGC 1 cut(s) 296
NlaIV GGNNCC 1 cut(s) 171
PceI AGGCCT 1 cut(s) 61
PkrI GCNGC 2 cut(s) 108, 289
Psp6I CCWGG 1 cut(s) 255
PspGI CCWGG 1 cut(s) 255
PspN4I GGNNCC 1 cut(s) 171
SatI GCNGC 2 cut(s) 107, 288
ScrFI CCNGG 1 cut(s) 257
SduI GDGCHC 2 cut(s) 162, 172
SetI ASST 1 cut(s) 251
SmlI CTYRAG 1 cut(s) 250
SmoI CTYRAG 1 cut(s) 250
Sse9I AATT 3 cut(s) 8, 232, 304
SseBI AGGCCT 1 cut(s) 61
SsiI CCGC 3 cut(s) 225, 287, 290
SspMI CTAG 1 cut(s) 155
StuI AGGCCT 1 cut(s) 61
StyD4I CCNGG 1 cut(s) 255
TaaI ACNGT 1 cut(s) 16
TasI AATT 3 cut(s) 8, 232, 304
TauI GCSGC 1 cut(s) 290
TscAI CASTG 2 cut(s) 208, 243
TseI GCWGC 1 cut(s) 106
TspRI CASTG 2 cut(s) 208, 243
VneI GTGCAC 1 cut(s) 158
XapI RAATTY 1 cut(s) 232
XspI CTAG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.