pycom04g02800

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0001515
Physical Location & Seq
Forward (+)
2579284 .. 2580807
1524 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g02800.1

Sequence Viewer

Length: 1524 bp
ATGGGATTTGAGAAAGAGCATATAGTAATGCTGCCATTCATGGCTCAAGGCCATATTATACCATTCCTAGCACTTGCAATGCACATCCAACAGTCAACAAACTTCTCAATCACCATTGCCACAACCCCTCTCAACATCAAATCCCTCCAATCCACCATTTCCTCCGCCTCATCCAATCACAACAACATCCACTTGGCCGAGCTTCCATTCTGCAGCTCAGACCACGACCTCCCCCCCAACACAGAAACCACAGAGAACCTCCCCCTCACCAAAATGATCAAACTTTTTGCTGCCTCACTCATCCTCGAACCTCCTGCTCGCAGCCTTATCACTGATATCATCAAACGGGAAGGCCGCCCGCCGCTCTGTTTGATCTCGGACGTGTTCTTCGGATGGGCTACCGATCTTGCAAACAGCTTAGGCACTGTCAATGTGAGTTTCACAACAAGCGGGGCTTACGGCACTGCAGCCTACACATCAATCTGGCTCAACCTCCCTCACCGTTCCGCAAGCTGCGAATACTTCACCGTCCCCGGCTTCCCAGAACACGGCAGGTTCCACATCTCTCAGCTGAATCCGTTTGTAAGAGCTGCTGACGGTACAGATTCTTGGTCAAAATTTTTCCAGCCCCAGATTTCGGGTTCTACAAAATCTTTTGGTTGGCTGTGTAATACTGTGGAGGAAATTGAGCCGTTGGGATTGGATATCTTGAGGGATAACTTGAAGCTTCCTGTTTGGTGCATTGGTCCTCTAATACCTAATGATGCACTCAAAAACTCATCCACATTGGACTTAAAGGTCTCGAGGCAGCGCACGGGAAAAGAAATGGGCTTTTCCGCAGAGAAATGCCTAGAGTGGCTTGACTCGCAAGGTTCGAATTCTGTAATTTACATCTCATTTGGTTCTCAGAACACAATCAGTGCAACCCAAATGATGGAATTGGCTGTTGGGTTGGAAGAAAGCGGAAAGCCTTTCATTTGGGTGATAAGGCCTCCGGTGGGGTTTGATCTGAAGGGAGAGTTCAAAGCAGAGTGGCTACCTAACGGGTTTGAGGAAAGAATGAGTAAACGAAAACGGGGGTTGCTAGTGCACAACTGGGCACCCCAGTTGGAGATTTTGTCACACAAATCCACTGGGTTTTTTGTGAGCCATTGCGGGTGGAATTCAGTGATGGAGAGCTTGAGCCACGGCGTGCCGATTGTGGGGTGGCCGTTGGCGGGGGAGCAGGCTTATAATTCGAAGATGTTGGTGGAGGAGATGGGTGTGAGTGTGGAGCTGACAAGGGGTGTGCAGAGTAATATTGGATGGAAGGAGGAGAAGGAGGTGATTGATCTGGTGATGGACAAGAGTGGGAAGGGAGGGGAGATGAGGAAAAATGCAGGTGAGATTAAGAAGAAGATAAGAGGATCAATTAGAGGTAATGATGGTGATCAAGGAAAGGAGAAGGGGTCTTCTGTTAAGGCAATGGAGGATTTTGTGGCTGCTCTTTTATCAAAGAAACAAGATTTGGCAAAAATCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

508

Amino Acids

55.96

Weight (kDa)

6.38

Isoelectric Point (pI)

46.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_N PF26168 7 - 253 5.5e-08 Glycosyltransferase, N-terminal domain
UDPGT PF00201 283 - 427 2.5e-22 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1233
AarI CACCTGC 1 cut(s) 1370
AasI GACNNNNNNGTC 1 cut(s) 797
Acc36I ACCTGC 2 cut(s) 543, 1370
AccB1I GGYRCC 1 cut(s) 1099
AccB7I CCANNNNNTGG 1 cut(s) 934
AccBSI CCGCTC 1 cut(s) 364
AclWI GGATC 1 cut(s) 1414
AcoI YGGCCR 2 cut(s) 195, 1208
AcsI RAATTY 3 cut(s) 617, 877, 1162
AcuI CTGAAG 1 cut(s) 1031
AdeI CACNNNGTG 1 cut(s) 1192
AfaI GTAC 1 cut(s) 601
AfiI CCNNNNNNNGG 6 cut(s) 548, 637, 934, 998, 1202, 1217
AflIII ACRYGT 1 cut(s) 381
AgsI TTSAA 2 cut(s) 724, 1024
AjiI CACGTC 1 cut(s) 382
AjuI GAANNNNNNNTTGG 4 cut(s) 930, 962, 1490, 1522
AluBI AGCT 9 cut(s) 202, 216, 417, 513, 571, 590, 727, 1179, 1276
AluI AGCT 9 cut(s) 202, 216, 417, 513, 571, 590, 727, 1179, 1276
Alw21I GWGCWC 1 cut(s) 1092
Alw26I GTCTC 1 cut(s) 805
Alw44I GTGCAC 1 cut(s) 1088
AlwI GGATC 1 cut(s) 1414
Ama87I CYCGRG 1 cut(s) 802
AoxI GGCC 5 cut(s) 49, 195, 352, 989, 1208
ApaLI GTGCAC 1 cut(s) 1088
ApeKI GCWGC 9 cut(s) 31, 213, 290, 321, 467, 513, 590, 808, 1481
ApoI RAATTY 3 cut(s) 617, 877, 1162
ArsI GACNNNNNNTTYG 2 cut(s) 371, 403
AspLEI GCGC 1 cut(s) 813
AspS9I GGNCC 1 cut(s) 746
AsuC2I CCSGG 1 cut(s) 534
AsuHPI GGTGA 9 cut(s) 103, 259, 491, 517, 994, 1336, 1348, 1394, 1439
AsuII TTCGAA 2 cut(s) 875, 1238
AvaI CYCGRG 1 cut(s) 802
AvaII GGWCC 1 cut(s) 746
BaeGI GKGCMC 2 cut(s) 1092, 1102
BanI GGYRCC 1 cut(s) 1099
BbsI GAAGAC 1 cut(s) 1443
Bbv12I GWGCWC 1 cut(s) 1092
BbvI GCAGC 9 cut(s) 18, 225, 277, 333, 479, 500, 577, 820, 1468
BccI CCATC 7 cut(s) 387, 928, 1165, 1252, 1299, 1333, 1418
BceAI ACGGC 5 cut(s) 475, 565, 676, 1195, 1204
BcgI CGANNNNNNTGC 2 cut(s) 296, 330
BclI TGATCA 2 cut(s) 276, 1429
BcnI CCSGG 1 cut(s) 534
BcoDI GTCTC 1 cut(s) 805
BfaI CTAG 3 cut(s) 68, 851, 1085
BfmI CTRYAG 2 cut(s) 211, 465
BfuAI ACCTGC 2 cut(s) 543, 1370
Bme1390I CCNGG 1 cut(s) 534
Bme18I GGWCC 1 cut(s) 746
BmeT110I CYCGRG 1 cut(s) 802
BmgBI CACGTC 1 cut(s) 382
BmgT120I GGNCC 1 cut(s) 746
BmiI GGNNCC 2 cut(s) 557, 1101
BmrFI CCNGG 1 cut(s) 534
BmrI ACTGGG 3 cut(s) 1099, 1105, 1143
BmsI GCATC 1 cut(s) 754
BmuI ACTGGG 3 cut(s) 1099, 1105, 1143
BpiI GAAGAC 1 cut(s) 1443
Bpu10I CCTNAGC 1 cut(s) 418
Bpu14I TTCGAA 2 cut(s) 875, 1238
BpuEI CTTGAG 3 cut(s) 30, 730, 1201
BpuMI CCSGG 1 cut(s) 534
BsaBI GATNNNNATC 1 cut(s) 1428
BsaI GGTCTC 1 cut(s) 805
BsaJI CCNNGG 2 cut(s) 532, 1186
BsaWI WCCGGW 1 cut(s) 994
BsaXI ACNNNNNCTCC 4 cut(s) 1103, 1133, 1433, 1463
Bsc4I CCNNNNNNNGG 6 cut(s) 548, 637, 934, 998, 1202, 1217
Bse1I ACTGG 3 cut(s) 1100, 1105, 1138
Bse3DI GCAATG 4 cut(s) 84, 114, 1150, 1470
Bse8I GATNNNNATC 1 cut(s) 1428
BseDI CCNNGG 2 cut(s) 532, 1186
BseGI GGATG 7 cut(s) 84, 170, 186, 300, 398, 779, 1310
BseJI GATNNNNATC 1 cut(s) 1428
BseLI CCNNNNNNNGG 6 cut(s) 548, 637, 934, 998, 1202, 1217
BseMI GCAATG 4 cut(s) 84, 114, 1150, 1470
BseMII CTCAG 3 cut(s) 231, 581, 920
BseNI ACTGG 3 cut(s) 1100, 1105, 1138
BseRI GAGGAG 2 cut(s) 1268, 1328
BseSI GKGCMC 2 cut(s) 1092, 1102
BseXI GCAGC 9 cut(s) 18, 225, 277, 333, 479, 500, 577, 820, 1468
BsgI GTGCAG 1 cut(s) 1310
BshFI GGCC 5 cut(s) 51, 197, 354, 991, 1210
BshNI GGYRCC 1 cut(s) 1099
BsiHKAI GWGCWC 1 cut(s) 1092
BsiHKCI CYCGRG 1 cut(s) 802
BsiSI CCGG 2 cut(s) 534, 995
BslFI GGGAC 1 cut(s) 515
BslI CCNNNNNNNGG 6 cut(s) 548, 637, 934, 998, 1202, 1217
BsmAI GTCTC 1 cut(s) 805
BsmFI GGGAC 1 cut(s) 515
BsnI GGCC 5 cut(s) 51, 197, 354, 991, 1210
Bso31I GGTCTC 1 cut(s) 805
BsoBI CYCGRG 1 cut(s) 802
Bsp119I TTCGAA 2 cut(s) 875, 1238
Bsp1286I GDGCHC 2 cut(s) 1092, 1102
Bsp143I GATC 7 cut(s) 276, 372, 403, 1006, 1330, 1406, 1429
BspANI GGCC 5 cut(s) 51, 197, 354, 991, 1210
BspCNI CTCAG 3 cut(s) 230, 580, 919
BspLI GGNNCC 2 cut(s) 557, 1101
BspMAI CTGCAG 2 cut(s) 215, 469
BspMI ACCTGC 2 cut(s) 543, 1370
BspPI GGATC 1 cut(s) 1414
BspT104I TTCGAA 2 cut(s) 875, 1238
BspT107I GGYRCC 1 cut(s) 1099
BspTNI GGTCTC 1 cut(s) 805
BsrBI CCGCTC 1 cut(s) 364
BsrDI GCAATG 4 cut(s) 84, 114, 1150, 1470
BsrI ACTGG 3 cut(s) 1100, 1105, 1138
BssECI CCNNGG 2 cut(s) 532, 1186
BssMI GATC 7 cut(s) 276, 372, 403, 1006, 1330, 1406, 1429
Bst4CI ACNGT 6 cut(s) 93, 427, 503, 529, 599, 676
BstBI TTCGAA 2 cut(s) 875, 1238
BstC8I GCNNGC 5 cut(s) 319, 359, 511, 1193, 1227
BstDEI CTNAG 4 cut(s) 217, 418, 567, 906
BstDSI CCRYGG 1 cut(s) 1186
BstF5I GGATG 7 cut(s) 84, 170, 186, 300, 398, 779, 1310
BstHHI GCGC 1 cut(s) 813
BstKTI GATC 7 cut(s) 279, 375, 406, 1009, 1333, 1409, 1432
BstMAI GTCTC 1 cut(s) 805
BstMBI GATC 7 cut(s) 276, 372, 403, 1006, 1330, 1406, 1429
BstMWI GCNNNNNNNGC 1 cut(s) 865
BstSCI CCNGG 1 cut(s) 532
BstSFI CTRYAG 2 cut(s) 211, 465
BstSLI GKGCMC 2 cut(s) 1092, 1102
BstV1I GCAGC 9 cut(s) 18, 225, 277, 333, 479, 500, 577, 820, 1468
BstV2I GAAGAC 1 cut(s) 1443
BsuRI GGCC 5 cut(s) 51, 197, 354, 991, 1210
BtgI CCRYGG 1 cut(s) 1186
BtrI CACGTC 1 cut(s) 382
BtsCI GGATG 7 cut(s) 84, 170, 186, 300, 398, 779, 1310
BtsI GCAGTG 1 cut(s) 462
BtsIMutI CAGTG 6 cut(s) 330, 423, 462, 925, 1131, 1173
BveI ACCTGC 2 cut(s) 543, 1370
Cac8I GCNNGC 5 cut(s) 319, 359, 511, 1193, 1227
CfoI GCGC 1 cut(s) 813
Cfr13I GGNCC 1 cut(s) 746
Csp6I GTAC 1 cut(s) 600
CviAII CATG 1 cut(s) 40
CviQI GTAC 1 cut(s) 600
DdeI CTNAG 4 cut(s) 217, 418, 567, 906
DpnI GATC 7 cut(s) 278, 374, 405, 1008, 1332, 1408, 1431
DpnII GATC 7 cut(s) 276, 372, 403, 1006, 1330, 1406, 1429
DraIII CACNNNGTG 1 cut(s) 1192
DrdI GACNNNNNNGTC 1 cut(s) 797
DseDI GACNNNNNNGTC 1 cut(s) 797
EaeI YGGCCR 2 cut(s) 195, 1208
EciI GGCGGA 1 cut(s) 154
Eco147I AGGCCT 1 cut(s) 991
Eco31I GGTCTC 1 cut(s) 805
Eco32I GATATC 2 cut(s) 337, 706
Eco47I GGWCC 1 cut(s) 746
Eco57I CTGAAG 1 cut(s) 1031
Eco88I CYCGRG 1 cut(s) 802
EcoRI GAATTC 2 cut(s) 877, 1162
EcoRV GATATC 2 cut(s) 337, 706
FaeI CATG 1 cut(s) 43
FaiI YATR 6 cut(s) 21, 23, 41, 54, 59, 1233
FalI AAGNNNNNCTT 2 cut(s) 439, 471
FaqI GGGAC 1 cut(s) 515
FatI CATG 1 cut(s) 39
FauI CCCGC 4 cut(s) 366, 443, 1148, 1210
FbaI TGATCA 2 cut(s) 276, 1429
FokI GGATG 7 cut(s) 71, 157, 173, 287, 405, 766, 1317
FspBI CTAG 3 cut(s) 68, 851, 1085
GlaI GCGC 1 cut(s) 812
HaeIII GGCC 5 cut(s) 51, 197, 354, 991, 1210
HapII CCGG 2 cut(s) 534, 995
HhaI GCGC 1 cut(s) 813
Hin1II CATG 1 cut(s) 43
Hin6I GCGC 1 cut(s) 811
HinP1I GCGC 1 cut(s) 811
HincII GTYRAC 1 cut(s) 96
HindII GTYRAC 1 cut(s) 96
HindIII AAGCTT 1 cut(s) 725
HinfI GANTC 3 cut(s) 574, 605, 863
HpaII CCGG 2 cut(s) 534, 995
HphI GGTGA 9 cut(s) 103, 259, 491, 517, 994, 1336, 1348, 1394, 1439
Hpy166II GTNNAC 3 cut(s) 96, 1067, 1090
Hpy188I TCNGA 5 cut(s) 220, 379, 392, 909, 1011
Hpy188III TCNNGA 2 cut(s) 709, 802
Hpy8I GTNNAC 3 cut(s) 96, 1067, 1090
HpyAV CCTTC 6 cut(s) 344, 1006, 1303, 1312, 1348, 1438
HpyCH4III ACNGT 6 cut(s) 93, 427, 503, 529, 599, 676
HpyCH4IV ACGT 1 cut(s) 381
HpyF10VI GCNNNNNNNGC 1 cut(s) 865
HpyF3I CTNAG 4 cut(s) 217, 418, 567, 906
HpySE526I ACGT 1 cut(s) 381
Hsp92II CATG 1 cut(s) 43
HspAI GCGC 1 cut(s) 811
Ksp22I TGATCA 2 cut(s) 276, 1429
Kzo9I GATC 7 cut(s) 276, 372, 403, 1006, 1330, 1406, 1429
LmnI GCTCC 2 cut(s) 1222, 1273
Lsp1109I GCAGC 9 cut(s) 18, 225, 277, 333, 479, 500, 577, 820, 1468
LweI GCATC 1 cut(s) 754
MaeI CTAG 3 cut(s) 68, 851, 1085
MaeII ACGT 1 cut(s) 381
MaeIII GTNAC 1 cut(s) 1119
MalI GATC 7 cut(s) 278, 374, 405, 1008, 1332, 1408, 1431
MbiI CCGCTC 1 cut(s) 364
MboI GATC 7 cut(s) 276, 372, 403, 1006, 1330, 1406, 1429
MboII GAAGA 6 cut(s) 379, 968, 1252, 1405, 1408, 1443
MhlI GDGCHC 2 cut(s) 1092, 1102
MluCI AATT 9 cut(s) 617, 684, 877, 885, 938, 1162, 1234, 1410, 1519
MlyI GAGTC 1 cut(s) 857
MmeI TCCRAC 3 cut(s) 112, 933, 1089
MseI TTAA 3 cut(s) 794, 1389, 1458
MslI CAYNNNNRTG 2 cut(s) 272, 980
MspA1I CMGCKG 1 cut(s) 571
MspI CCGG 2 cut(s) 534, 995
MspR9I CCNGG 1 cut(s) 534
MwoI GCNNNNNNNGC 1 cut(s) 865
NciI CCSGG 1 cut(s) 534
NdeII GATC 7 cut(s) 276, 372, 403, 1006, 1330, 1406, 1429
NlaIII CATG 1 cut(s) 43
NlaIV GGNNCC 2 cut(s) 557, 1101
NmeAIII GCCGAG 1 cut(s) 223
NmuCI GTSAC 1 cut(s) 1119
NspV TTCGAA 2 cut(s) 875, 1238
PaeR7I CTCGAG 1 cut(s) 802
PaqCI CACCTGC 1 cut(s) 1370
PceI AGGCCT 1 cut(s) 991
PcsI WCGNNNNNNNCGW 1 cut(s) 872
PfeI GAWTC 2 cut(s) 574, 605
PflMI CCANNNNNTGG 1 cut(s) 934
PleI GAGTC 1 cut(s) 857
PpsI GAGTC 1 cut(s) 857
PsiI TTATAA 1 cut(s) 1233
PspN4I GGNNCC 2 cut(s) 557, 1101
PspPI GGNCC 1 cut(s) 746
PstI CTGCAG 2 cut(s) 215, 469
PvuII CAGCTG 1 cut(s) 571
RsaI GTAC 1 cut(s) 601
RsaNI GTAC 1 cut(s) 600
RseI CAYNNNNRTG 2 cut(s) 272, 980
SaqAI TTAA 3 cut(s) 794, 1389, 1458
Sau3AI GATC 7 cut(s) 276, 372, 403, 1006, 1330, 1406, 1429
Sau96I GGNCC 1 cut(s) 746
SchI GAGTC 1 cut(s) 857
ScrFI CCNGG 1 cut(s) 534
SduI GDGCHC 2 cut(s) 1092, 1102
SfaNI GCATC 1 cut(s) 754
SfcI CTRYAG 2 cut(s) 211, 465
Sfr274I CTCGAG 1 cut(s) 802
SfuI TTCGAA 2 cut(s) 875, 1238
SinI GGWCC 1 cut(s) 746
SlaI CTCGAG 1 cut(s) 802
SmiMI CAYNNNNRTG 2 cut(s) 272, 980
SmlI CTYRAG 4 cut(s) 45, 709, 802, 1180
SmoI CTYRAG 4 cut(s) 45, 709, 802, 1180
Sse9I AATT 9 cut(s) 617, 684, 877, 885, 938, 1162, 1234, 1410, 1519
SseBI AGGCCT 1 cut(s) 991
SspI AATATT 1 cut(s) 1300
SspMI CTAG 3 cut(s) 68, 851, 1085
StuI AGGCCT 1 cut(s) 991
StyD4I CCNGG 1 cut(s) 532
TaaI ACNGT 6 cut(s) 93, 427, 503, 529, 599, 676
TaiI ACGT 1 cut(s) 384
TaqI TCGA 4 cut(s) 306, 803, 875, 1238
TasI AATT 9 cut(s) 617, 684, 877, 885, 938, 1162, 1234, 1410, 1519
TauI GCSGC 2 cut(s) 357, 364
TfiI GAWTC 2 cut(s) 574, 605
Tru1I TTAA 3 cut(s) 794, 1389, 1458
Tru9I TTAA 3 cut(s) 794, 1389, 1458
TscAI CASTG 6 cut(s) 337, 430, 469, 925, 1138, 1173
TseFI GTSAC 1 cut(s) 1119
TseI GCWGC 9 cut(s) 31, 213, 290, 321, 467, 513, 590, 808, 1481
Tsp45I GTSAC 1 cut(s) 1119
TspDTI ATGAA 2 cut(s) 28, 964
TspGWI ACGGA 1 cut(s) 567
TspRI CASTG 6 cut(s) 337, 430, 469, 925, 1138, 1173
Van91I CCANNNNNTGG 1 cut(s) 934
VneI GTGCAC 1 cut(s) 1088
VpaK11BI GGWCC 1 cut(s) 746
XapI RAATTY 3 cut(s) 617, 877, 1162
XhoI CTCGAG 1 cut(s) 802
XspI CTAG 3 cut(s) 68, 851, 1085
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.