RCHIOBHM_CHR0C23G0500721

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_chinensis
Unknown
OG0001515
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 576 bp
ATGGGTTTTGAGAAGGACCACATAGTGATGCTACCATTCTTGGCTCAAGGCCATCTGATTCCGTTCCTAGCCCTAGCCAAGCAAATCCAGCACAGAACAGGGTTCACCATCACCATCGCCACCACCGCCCTCAACGCCCATTACCTTCGGTCTGCTCAACCCAACACCAACATCCACTTGGCCGAGCTTCCCTTCCGCAGCGAAGACTATGGCCTCCCGCCCAACACAGAGAACACAGAGAACATACCTCTCAACGTAGTCGGAAACCTCTTCACTGCATCGCAACATCTCGAAGCTCCGACTCGCCGCCTTGTCTCGGACATCACCGAAAAAGAAGGCAAGCCGCCGCTTTGCTTAATCTCCGACGTGTTTTTTGGGTGGGCTGTGAATGTAGCGAAAAGCTTCGGCACCGTCAACGTCGCTTTCACCACCGGTGGGGCTTACGGCACGGCGGCGTACGTGTCCATCTGGCAACATCTCCCGCATCGTAGTGTGTCTTCAGAAGACGCGGAGTTCCACCTTCCGGGGTTCCCGGAACGGTGTCGTTTGACACCGTCTCACTTGCATCCGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

191

Amino Acids

21.14

Weight (kDa)

6.39

Isoelectric Point (pI)

50.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 407
AccII CGCG 1 cut(s) 509
AciI CCGC 9 cut(s) 126, 196, 218, 307, 344, 347, 452, 482, 509
AcoI YGGCCR 1 cut(s) 180
AcuI CTGAAG 1 cut(s) 483
AdeI CACNNNGTG 1 cut(s) 25
AfaI GTAC 1 cut(s) 458
AfiI CCNNNNNNNGG 3 cut(s) 316, 435, 523
AflIII ACRYGT 2 cut(s) 366, 459
AgeI ACCGGT 1 cut(s) 431
AjiI CACGTC 1 cut(s) 367
AluBI AGCT 3 cut(s) 187, 296, 402
AluI AGCT 3 cut(s) 187, 296, 402
Alw26I GTCTC 2 cut(s) 319, 561
AoxI GGCC 3 cut(s) 49, 180, 211
ApeKI GCWGC 1 cut(s) 198
ArsI GACNNNNNNTTYG 2 cut(s) 356, 388
AsiGI ACCGGT 1 cut(s) 431
Asp700I GAANNNNTTC 1 cut(s) 401
AspS9I GGNCC 1 cut(s) 16
AsuC2I CCSGG 2 cut(s) 525, 533
AsuHPI GGTGA 4 cut(s) 97, 103, 316, 418
AvaII GGWCC 1 cut(s) 16
BanI GGYRCC 1 cut(s) 407
BarI GAAGNNNNNNTAC 2 cut(s) 481, 513
BbsI GAAGAC 3 cut(s) 210, 489, 510
BbvI GCAGC 1 cut(s) 210
BccI CCATC 4 cut(s) 60, 116, 122, 473
BceAI ACGGC 2 cut(s) 460, 465
BcnI CCSGG 2 cut(s) 525, 533
BcoDI GTCTC 2 cut(s) 319, 561
BfaI CTAG 2 cut(s) 68, 74
BisI GCNGC 5 cut(s) 199, 307, 344, 347, 453
BlsI GCNGC 5 cut(s) 200, 308, 345, 348, 454
Bme1390I CCNGG 2 cut(s) 525, 533
Bme18I GGWCC 1 cut(s) 16
BmgBI CACGTC 1 cut(s) 367
BmgT120I GGNCC 1 cut(s) 16
BmiI GGNNCC 2 cut(s) 409, 530
BmrFI CCNGG 2 cut(s) 525, 533
BmsI GCATC 3 cut(s) 18, 287, 493
BpiI GAAGAC 3 cut(s) 210, 489, 510
BpuEI CTTGAG 1 cut(s) 30
BpuMI CCSGG 2 cut(s) 525, 533
BsaAI YACGTR 1 cut(s) 460
BsaJI CCNNGG 1 cut(s) 524
BsaWI WCCGGW 1 cut(s) 431
Bsc4I CCNNNNNNNGG 3 cut(s) 316, 435, 523
Bse118I RCCGGY 1 cut(s) 431
BseDI CCNNGG 1 cut(s) 524
BseGI GGATG 2 cut(s) 171, 565
BseLI CCNNNNNNNGG 3 cut(s) 316, 435, 523
BseXI GCAGC 1 cut(s) 210
Bsh1236I CGCG 1 cut(s) 509
BshFI GGCC 3 cut(s) 51, 182, 213
BshNI GGYRCC 1 cut(s) 407
BshTI ACCGGT 1 cut(s) 431
BsiSI CCGG 3 cut(s) 432, 524, 533
BsiWI CGTACG 1 cut(s) 456
BslI CCNNNNNNNGG 3 cut(s) 316, 435, 523
BsmAI GTCTC 2 cut(s) 319, 561
BsmBI CGTCTC 1 cut(s) 561
BsnI GGCC 3 cut(s) 51, 182, 213
BspACI CCGC 9 cut(s) 126, 196, 218, 307, 344, 347, 452, 482, 509
BspANI GGCC 3 cut(s) 51, 182, 213
BspFNI CGCG 1 cut(s) 509
BspLI GGNNCC 2 cut(s) 409, 530
BspT107I GGYRCC 1 cut(s) 407
BsrFI RCCGGY 1 cut(s) 431
BssAI RCCGGY 1 cut(s) 431
BssECI CCNNGG 1 cut(s) 524
Bst4CI ACNGT 3 cut(s) 412, 540, 555
Bst6I CTCTTC 1 cut(s) 275
BstBAI YACGTR 1 cut(s) 460
BstC8I GCNNGC 1 cut(s) 341
BstF5I GGATG 2 cut(s) 171, 565
BstFNI CGCG 1 cut(s) 509
BstMAI GTCTC 2 cut(s) 319, 561
BstMWI GCNNNNNNNGC 3 cut(s) 88, 125, 134
BstSCI CCNGG 2 cut(s) 523, 531
BstUI CGCG 1 cut(s) 509
BstV1I GCAGC 1 cut(s) 210
BstV2I GAAGAC 3 cut(s) 210, 489, 510
BsuRI GGCC 3 cut(s) 51, 182, 213
BtgZI GCGATG 2 cut(s) 100, 264
BtrI CACGTC 1 cut(s) 367
BtsCI GGATG 2 cut(s) 171, 565
BtsI GCAGTG 1 cut(s) 273
BtsIMutI CAGTG 1 cut(s) 273
Cac8I GCNNGC 1 cut(s) 341
Cfr10I RCCGGY 1 cut(s) 431
Cfr13I GGNCC 1 cut(s) 16
CseI GACGC 1 cut(s) 515
Csp6I GTAC 1 cut(s) 457
CspAI ACCGGT 1 cut(s) 431
CviQI GTAC 1 cut(s) 457
DraIII CACNNNGTG 1 cut(s) 25
EaeI YGGCCR 1 cut(s) 180
Eam1104I CTCTTC 1 cut(s) 275
EarI CTCTTC 1 cut(s) 275
Eco47I GGWCC 1 cut(s) 16
Eco57I CTGAAG 1 cut(s) 483
Esp3I CGTCTC 1 cut(s) 561
FaiI YATR 3 cut(s) 23, 210, 245
FauI CCCGC 2 cut(s) 225, 489
Fnu4HI GCNGC 5 cut(s) 199, 307, 344, 347, 453
FokI GGATG 2 cut(s) 158, 552
Fsp4HI GCNGC 5 cut(s) 199, 307, 344, 347, 453
FspBI CTAG 2 cut(s) 68, 74
GluI GCNGC 5 cut(s) 199, 307, 344, 347, 453
HaeIII GGCC 3 cut(s) 51, 182, 213
HapII CCGG 3 cut(s) 432, 524, 533
HgaI GACGC 1 cut(s) 515
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HindIII AAGCTT 1 cut(s) 400
HinfI GANTC 2 cut(s) 58, 301
HpaII CCGG 3 cut(s) 432, 524, 533
HphI GGTGA 4 cut(s) 97, 103, 316, 418
Hpy166II GTNNAC 2 cut(s) 105, 415
Hpy188I TCNGA 6 cut(s) 57, 263, 300, 319, 364, 502
Hpy188III TCNNGA 1 cut(s) 290
Hpy8I GTNNAC 2 cut(s) 105, 415
Hpy99I CGWCG 2 cut(s) 368, 422
HpyAV CCTTC 5 cut(s) 7, 155, 202, 329, 530
HpyCH4III ACNGT 3 cut(s) 412, 540, 555
HpyCH4IV ACGT 4 cut(s) 255, 366, 417, 459
HpyCH4V TGCA 2 cut(s) 278, 565
HpyF10VI GCNNNNNNNGC 3 cut(s) 88, 125, 134
HpySE526I ACGT 4 cut(s) 255, 366, 417, 459
LmnI GCTCC 1 cut(s) 301
LpnPI CCDG 6 cut(s) 84, 101, 445, 454, 537, 546
Lsp1109I GCAGC 1 cut(s) 210
LweI GCATC 3 cut(s) 18, 287, 493
MaeI CTAG 2 cut(s) 68, 74
MaeII ACGT 4 cut(s) 255, 366, 417, 459
MboII GAAGA 4 cut(s) 215, 262, 489, 515
MlyI GAGTC 1 cut(s) 295
MmeI TCCRAC 3 cut(s) 241, 323, 387
MnlI CCTC 4 cut(s) 140, 224, 258, 278
MroXI GAANNNNTTC 1 cut(s) 401
MseI TTAA 1 cut(s) 356
MslI CAYNNNNRTG 2 cut(s) 26, 489
MspI CCGG 3 cut(s) 432, 524, 533
MspR9I CCNGG 2 cut(s) 525, 533
MvnI CGCG 1 cut(s) 509
MwoI GCNNNNNNNGC 3 cut(s) 88, 125, 134
NciI CCSGG 2 cut(s) 525, 533
NlaIV GGNNCC 2 cut(s) 409, 530
NmeAIII GCCGAG 1 cut(s) 208
PdmI GAANNNNTTC 1 cut(s) 401
PfeI GAWTC 1 cut(s) 58
Pfl23II CGTACG 1 cut(s) 456
PflFI GACNNNGTC 1 cut(s) 553
PfoI TCCNGGA 1 cut(s) 531
PinAI ACCGGT 1 cut(s) 431
PkrI GCNGC 5 cut(s) 200, 308, 345, 348, 454
PleI GAGTC 1 cut(s) 295
PpsI GAGTC 1 cut(s) 295
Ppu21I YACGTR 1 cut(s) 460
PspLI CGTACG 1 cut(s) 456
PspN4I GGNNCC 2 cut(s) 409, 530
PspPI GGNCC 1 cut(s) 16
PsyI GACNNNGTC 1 cut(s) 553
RsaI GTAC 1 cut(s) 458
RsaNI GTAC 1 cut(s) 457
RseI CAYNNNNRTG 2 cut(s) 26, 489
SaqAI TTAA 1 cut(s) 356
SatI GCNGC 5 cut(s) 199, 307, 344, 347, 453
Sau96I GGNCC 1 cut(s) 16
SchI GAGTC 1 cut(s) 295
ScrFI CCNGG 2 cut(s) 525, 533
SfaNI GCATC 3 cut(s) 18, 287, 493
SgrAI CRCCGGYG 1 cut(s) 431
SinI GGWCC 1 cut(s) 16
SmiMI CAYNNNNRTG 2 cut(s) 26, 489
SmlI CTYRAG 1 cut(s) 45
SmoI CTYRAG 1 cut(s) 45
SsiI CCGC 9 cut(s) 126, 196, 218, 307, 344, 347, 452, 482, 509
SspMI CTAG 2 cut(s) 68, 74
StyD4I CCNGG 2 cut(s) 523, 531
TaaI ACNGT 3 cut(s) 412, 540, 555
TaiI ACGT 4 cut(s) 258, 369, 420, 462
TaqI TCGA 1 cut(s) 291
TaqII GACCGA 1 cut(s) 138
TauI GCSGC 4 cut(s) 309, 346, 349, 455
TfiI GAWTC 1 cut(s) 58
Tru1I TTAA 1 cut(s) 356
Tru9I TTAA 1 cut(s) 356
TscAI CASTG 1 cut(s) 280
TseI GCWGC 1 cut(s) 198
TspGWI ACGGA 2 cut(s) 51, 558
TspRI CASTG 1 cut(s) 280
Tth111I GACNNNGTC 1 cut(s) 553
VpaK11BI GGWCC 1 cut(s) 16
XcmI CCANNNNNNNNNTGG 1 cut(s) 175
XmnI GAANNNNTTC 1 cut(s) 401
XspI CTAG 2 cut(s) 68, 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.