MD11G1022200.v1.1

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0001515
Physical Location & Seq
Forward (+)
1909890 .. 1911386
1497 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1022200.v1.1.491

Sequence Viewer

Length: 1497 bp
ATGGCAGAAATCAAGGAACACATAGTTATGTTCCCATTCATGGCACAAGGCCACATAATTCCATTCCTTGCCTTGGCCCAACAACTAGAGCAGAAAAAAGGTTGCACCATAACCCTAATCAACACCCCACTCAATATCAAGAAGCTCAGCTCCTCCCTCCCTCCGAACACCACCATTCGCCTCCTCGAAATCCCTTTCAAGAGCTCCGATCACGGTCTTCCCAGCGACGCCGAAAACACCAATTCCCTATCCTACCATCTCATCCTCAAACTCTTTCAAGCTTCCTTGTCACTCAAGCCTTGTTTCAGAAACCTAATGCACGGTCTTGTCCATGAAAGAAATGGACTGCGCCGACCGGTTTGCATGATCACTGACATCTTCTTTGGGTGGACGATTGAGATAGCTCATGAGTTTGGCATGTCCCATGCTGTGTTCTCCACAGTTGGAGGGTTCGGCATGGCGTGCTATTACTCGTTGTGCTTGCATTTACCTCATCTGAAAGCAAAATCCGGAGAATATGAATTCACACTGCCTGATTTTCCAGAAGCTAAGAAATTTCATATATCCCAGCTCTCAGAAAGTCTTAAACTGAGCAATGGCACCGACCCCTTTTCAGTGTTTGTGCATAAAGCATTCAATGAGTGCATGAAAACTGACGGAATGGTAATCAACACGGTGGAGGAGCTAGACAAAACCGGGCTGATGTACCTCCGGAAGATCTTTAAATTGCCAGTTTGGGCAGTTGGACCGCTTCTTCTATCATCCGGAAATGGAACTAAAAGGGCAGGAAAAGAATCCGGACTCACACCAGAAGCATGCAAAAACTGGCTTGATTCAAAACCACCCAGGTCAGTTTTGTACATTTCATTTGGTTCTCAAAACACAGTTTCAAAGTCTCAGATGATGCAATTGGCAATGGCATTGGAGTCAAGTGGTAAAAACTTCATTTGGGTTGTTAGGCCACCATTGGAATATGATGTTGATTCAGAGTTCAAGGAGAAGGAGTGGTTTCCGGAAGGGTTCGTGCAGAGGATTAAAGCTCGAAACAAAGGGCTAATTGTCGAAAAATGGGCACCTCAGGTGGAAATACTGTCTCACAAAGCAACCTCTGCTTTTTTGAGCCATTGTGGATGGAACTCGGTGATCGAGTCCCTTGTTCATGGGGTGCCTTTACTCGGGTGGCCTATGGCTTCAGAACAGTTTTTCAACGTCAAGTATCTGGTGGAGCAAGTCGGAGTTTGCGTGGAAGTAGCGAGGGGGAAGAGTTGTGAGGTTCAGAAGGAAAATATAGTGGCGAAGTTGGAGTTGGTGATGAATGAGACAGAGAAAGGGAAGCAAATGAGAAGGAAAGCTAGCGAGGCAAAGGAGATTATTAGGGATGCCATGAAGGATGAGGAGGGATACAAAGGTTGTTCTACTAAAGCTTTGGAAGACTTTCTAACAGCCGCTGCAATGTCATACAGGGTCGAAGAAAACAGTGGACTCAAAACCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

499

Amino Acids

55.91

Weight (kDa)

8.48

Isoelectric Point (pI)

44.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 270 - 441 1.7e-21 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 599, 1072, 1165
AccIII TCCGGA 5 cut(s) 509, 711, 764, 797, 1012
AciI CCGC 2 cut(s) 749, 1446
AcsI RAATTY 2 cut(s) 521, 554
AcuI CTGAAG 1 cut(s) 1176
AcyI GRCGYC 1 cut(s) 228
AfaI GTAC 2 cut(s) 707, 860
AfiI CCNNNNNNNGG 3 cut(s) 40, 73, 1175
AgeI ACCGGT 1 cut(s) 355
AgsI TTSAA 7 cut(s) 199, 278, 637, 837, 891, 994, 1207
AjnI CCWGG 1 cut(s) 845
AjuI GAANNNNNNNTTGG 2 cut(s) 1289, 1321
Alw21I GWGCWC 1 cut(s) 206
Alw26I GTCTC 3 cut(s) 900, 1098, 1313
AlwNI CAGNNNCTG 1 cut(s) 1448
Ama87I CYCGRG 1 cut(s) 1175
Aor13HI TCCGGA 5 cut(s) 509, 711, 764, 797, 1012
AoxI GGCC 4 cut(s) 49, 75, 959, 1181
ApeKI GCWGC 1 cut(s) 1448
ApoI RAATTY 2 cut(s) 521, 554
ArsI GACNNNNNNTTYG 2 cut(s) 365, 397
AsiGI ACCGGT 1 cut(s) 355
Asp700I GAANNNNTTC 1 cut(s) 1434
AspLEI GCGC 1 cut(s) 351
AspS9I GGNCC 2 cut(s) 76, 746
AsuC2I CCSGG 1 cut(s) 697
AsuHPI GGTGA 2 cut(s) 1153, 1321
AsuNHI GCTAGC 1 cut(s) 1352
AvaI CYCGRG 1 cut(s) 1175
AvaII GGWCC 1 cut(s) 746
AxyI CCTNAGG 1 cut(s) 1077
BaeGI GKGCMC 1 cut(s) 1075
BaeI ACNNNNGTAYC 2 cut(s) 1393, 1426
BanI GGYRCC 3 cut(s) 599, 1072, 1165
BanII GRGCYC 1 cut(s) 206
BbsI GAAGAC 2 cut(s) 209, 1437
Bbv12I GWGCWC 1 cut(s) 206
BbvI GCAGC 1 cut(s) 1435
BccI CCATC 2 cut(s) 264, 1125
BcgI CGANNNNNNTGC 2 cut(s) 342, 376
BciT130I CCWGG 1 cut(s) 847
BciVI GTATCC 1 cut(s) 1394
BclI TGATCA 1 cut(s) 366
BcnI CCSGG 1 cut(s) 697
BcoDI GTCTC 3 cut(s) 900, 1098, 1313
BfaI CTAG 3 cut(s) 86, 686, 1353
BfuI GTATCC 1 cut(s) 1394
BglII AGATCT 1 cut(s) 717
BisI GCNGC 2 cut(s) 1446, 1449
BlpI GCTNAGC 1 cut(s) 146
BlsI GCNGC 2 cut(s) 1447, 1450
Bme1390I CCNGG 2 cut(s) 697, 847
Bme18I GGWCC 1 cut(s) 746
BmeT110I CYCGRG 1 cut(s) 1175
BmgT120I GGNCC 2 cut(s) 76, 746
BmiI GGNNCC 3 cut(s) 601, 1074, 1167
BmrFI CCNGG 2 cut(s) 697, 847
BmsI GCATC 2 cut(s) 894, 1369
BmtI GCTAGC 1 cut(s) 1356
BpiI GAAGAC 2 cut(s) 209, 1437
Bpu1102I GCTNAGC 1 cut(s) 146
BpuEI CTTGAG 1 cut(s) 278
BpuMI CCSGG 1 cut(s) 697
BsaHI GRCGYC 1 cut(s) 228
BsaJI CCNNGG 2 cut(s) 72, 845
BsaWI WCCGGW 6 cut(s) 355, 509, 711, 764, 797, 1012
BsaXI ACNNNNNCTCC 4 cut(s) 989, 1019, 1227, 1257
Bsc4I CCNNNNNNNGG 3 cut(s) 40, 73, 1175
Bse118I RCCGGY 1 cut(s) 355
Bse1I ACTGG 2 cut(s) 731, 830
Bse21I CCTNAGG 1 cut(s) 1077
Bse3DI GCAATG 3 cut(s) 601, 921, 1458
BseAI TCCGGA 5 cut(s) 509, 711, 764, 797, 1012
BseBI CCWGG 1 cut(s) 847
BseDI CCNNGG 2 cut(s) 72, 845
BseGI GGATG 5 cut(s) 261, 761, 1136, 1384, 1396
BseLI CCNNNNNNNGG 3 cut(s) 40, 73, 1175
BseMI GCAATG 3 cut(s) 601, 921, 1458
BseMII CTCAG 5 cut(s) 160, 581, 588, 911, 1091
BseNI ACTGG 2 cut(s) 731, 830
BseRI GAGGAG 4 cut(s) 142, 173, 695, 1409
BseSI GKGCMC 1 cut(s) 1075
BseXI GCAGC 1 cut(s) 1435
BseYI CCCAGC 2 cut(s) 221, 567
BsgI GTGCAG 1 cut(s) 1046
Bsh1285I CGRYCG 1 cut(s) 356
BshFI GGCC 4 cut(s) 51, 77, 961, 1183
BshNI GGYRCC 3 cut(s) 599, 1072, 1165
BshTI ACCGGT 1 cut(s) 355
BsiEI CGRYCG 1 cut(s) 356
BsiHKAI GWGCWC 1 cut(s) 206
BsiHKCI CYCGRG 1 cut(s) 1175
BsiSI CCGG 7 cut(s) 356, 510, 696, 712, 765, 798, 1013
BslFI GGGAC 2 cut(s) 406, 1135
BslI CCNNNNNNNGG 3 cut(s) 40, 73, 1175
BsmAI GTCTC 3 cut(s) 900, 1098, 1313
BsmFI GGGAC 2 cut(s) 406, 1135
BsmI GAATGC 1 cut(s) 632
BsnI GGCC 4 cut(s) 51, 77, 961, 1183
BsoBI CYCGRG 1 cut(s) 1175
Bsp1286I GDGCHC 2 cut(s) 206, 1075
Bsp13I TCCGGA 5 cut(s) 509, 711, 764, 797, 1012
Bsp1407I TGTACA 1 cut(s) 858
Bsp143I GATC 4 cut(s) 208, 366, 717, 1143
Bsp1720I GCTNAGC 1 cut(s) 146
BspACI CCGC 2 cut(s) 749, 1446
BspANI GGCC 4 cut(s) 51, 77, 961, 1183
BspCNI CTCAG 5 cut(s) 159, 582, 587, 910, 1090
BspEI TCCGGA 5 cut(s) 509, 711, 764, 797, 1012
BspHI TCATGA 1 cut(s) 406
BspLI GGNNCC 3 cut(s) 601, 1074, 1167
BspOI GCTAGC 1 cut(s) 1356
BspT107I GGYRCC 3 cut(s) 599, 1072, 1165
BsrDI GCAATG 3 cut(s) 601, 921, 1458
BsrFI RCCGGY 1 cut(s) 355
BsrGI TGTACA 1 cut(s) 858
BsrI ACTGG 2 cut(s) 731, 830
BssAI RCCGGY 1 cut(s) 355
BssECI CCNNGG 2 cut(s) 72, 845
BssMI GATC 4 cut(s) 208, 366, 717, 1143
BssNI GRCGYC 1 cut(s) 228
BssT1I CCWWGG 1 cut(s) 72
Bst2UI CCWGG 1 cut(s) 847
Bst4CI ACNGT 8 cut(s) 215, 323, 442, 676, 886, 1092, 1200, 1478
Bst6I CTCTTC 1 cut(s) 1256
BstACI GRCGYC 1 cut(s) 228
BstAPI GCANNNNNTGC 2 cut(s) 462, 1109
BstAUI TGTACA 1 cut(s) 858
BstC8I GCNNGC 4 cut(s) 463, 482, 817, 1354
BstDEI CTNAG 6 cut(s) 146, 549, 574, 590, 897, 1077
BstF5I GGATG 5 cut(s) 261, 761, 1136, 1384, 1396
BstHHI GCGC 1 cut(s) 351
BstKTI GATC 4 cut(s) 211, 369, 720, 1146
BstMAI GTCTC 3 cut(s) 900, 1098, 1313
BstMBI GATC 4 cut(s) 208, 366, 717, 1143
BstMCI CGRYCG 1 cut(s) 356
BstMWI GCNNNNNNNGC 3 cut(s) 462, 1109, 1358
BstNI CCWGG 1 cut(s) 847
BstNSI RCATGY 2 cut(s) 421, 819
BstSCI CCNGG 2 cut(s) 695, 845
BstSLI GKGCMC 1 cut(s) 1075
BstV1I GCAGC 1 cut(s) 1435
BstV2I GAAGAC 2 cut(s) 209, 1437
BstX2I RGATCY 1 cut(s) 717
BstYI RGATCY 1 cut(s) 717
Bsu36I CCTNAGG 1 cut(s) 1077
BsuI GTATCC 1 cut(s) 1394
BsuRI GGCC 4 cut(s) 51, 77, 961, 1183
BtsCI GGATG 5 cut(s) 261, 761, 1136, 1384, 1396
BtsI GCAGTG 1 cut(s) 527
BtsIMutI CAGTG 4 cut(s) 369, 527, 621, 1483
Cac8I GCNNGC 4 cut(s) 463, 482, 817, 1354
CaiI CAGNNNCTG 1 cut(s) 1448
CciI TCATGA 1 cut(s) 406
CfoI GCGC 1 cut(s) 351
Cfr10I RCCGGY 1 cut(s) 355
Cfr13I GGNCC 2 cut(s) 76, 746
CseI GACGC 1 cut(s) 236
Csp6I GTAC 2 cut(s) 706, 859
CspAI ACCGGT 1 cut(s) 355
CviQI GTAC 2 cut(s) 706, 859
DdeI CTNAG 6 cut(s) 146, 549, 574, 590, 897, 1077
DpnI GATC 4 cut(s) 210, 368, 719, 1145
DpnII GATC 4 cut(s) 208, 366, 717, 1143
DraI TTTAAA 1 cut(s) 724
Eam1104I CTCTTC 1 cut(s) 1256
EarI CTCTTC 1 cut(s) 1256
Ecl136II GAGCTC 1 cut(s) 204
Eco130I CCWWGG 1 cut(s) 72
Eco24I GRGCYC 1 cut(s) 206
Eco47I GGWCC 1 cut(s) 746
Eco53kI GAGCTC 1 cut(s) 204
Eco57I CTGAAG 1 cut(s) 1176
Eco81I CCTNAGG 1 cut(s) 1077
Eco88I CYCGRG 1 cut(s) 1175
EcoICRI GAGCTC 1 cut(s) 204
EcoRI GAATTC 1 cut(s) 521
EcoRII CCWGG 1 cut(s) 845
EcoT14I CCWWGG 1 cut(s) 72
EcoT38I GRGCYC 1 cut(s) 206
ErhI CCWWGG 1 cut(s) 72
FaqI GGGAC 2 cut(s) 406, 1135
FbaI TGATCA 1 cut(s) 366
Fnu4HI GCNGC 2 cut(s) 1446, 1449
FokI GGATG 5 cut(s) 248, 748, 1143, 1391, 1403
FriOI GRGCYC 1 cut(s) 206
Fsp4HI GCNGC 2 cut(s) 1446, 1449
FspBI CTAG 3 cut(s) 86, 686, 1353
GlaI GCGC 1 cut(s) 350
GluI GCNGC 2 cut(s) 1446, 1449
GsaI CCCAGC 2 cut(s) 225, 571
HaeIII GGCC 4 cut(s) 51, 77, 961, 1183
HapII CCGG 7 cut(s) 356, 510, 696, 712, 765, 798, 1013
HgaI GACGC 1 cut(s) 236
HhaI GCGC 1 cut(s) 351
Hin1I GRCGYC 1 cut(s) 228
Hin6I GCGC 1 cut(s) 349
HinP1I GCGC 1 cut(s) 349
HindIII AAGCTT 2 cut(s) 279, 1422
HinfI GANTC 7 cut(s) 794, 801, 833, 926, 983, 1148, 1482
HpaII CCGG 7 cut(s) 356, 510, 696, 712, 765, 798, 1013
HphI GGTGA 2 cut(s) 1153, 1321
Hpy166II GTNNAC 2 cut(s) 390, 1481
Hpy188III TCNNGA 9 cut(s) 139, 199, 407, 510, 542, 712, 765, 798, 1013
Hpy8I GTNNAC 2 cut(s) 390, 1481
Hpy99I CGWCG 1 cut(s) 230
HpyAV CCTTC 5 cut(s) 994, 1010, 1273, 1338, 1381
HpyCH4III ACNGT 8 cut(s) 215, 323, 442, 676, 886, 1092, 1200, 1478
HpyCH4IV ACGT 1 cut(s) 1209
HpyF10VI GCNNNNNNNGC 3 cut(s) 462, 1109, 1358
HpyF3I CTNAG 6 cut(s) 146, 549, 574, 590, 897, 1077
HpySE526I ACGT 1 cut(s) 1209
Hsp92I GRCGYC 1 cut(s) 228
HspAI GCGC 1 cut(s) 349
Kpn2I TCCGGA 5 cut(s) 509, 711, 764, 797, 1012
Ksp22I TGATCA 1 cut(s) 366
Kzo9I GATC 4 cut(s) 208, 366, 717, 1143
LmnI GCTCC 4 cut(s) 155, 209, 682, 1225
Lsp1109I GCAGC 1 cut(s) 1435
LweI GCATC 2 cut(s) 894, 1369
MaeI CTAG 3 cut(s) 86, 686, 1353
MaeII ACGT 1 cut(s) 1209
MaeIII GTNAC 1 cut(s) 288
MalI GATC 4 cut(s) 210, 368, 719, 1145
MboI GATC 4 cut(s) 208, 366, 717, 1143
MboII GAAGA 7 cut(s) 209, 370, 727, 746, 1273, 1442, 1481
MfeI CAATTG 1 cut(s) 908
MflI RGATCY 1 cut(s) 717
MhlI GDGCHC 2 cut(s) 206, 1075
MluCI AATT 7 cut(s) 57, 241, 521, 554, 725, 908, 1056
MlyI GAGTC 4 cut(s) 795, 935, 1157, 1476
MmeI TCCRAC 4 cut(s) 424, 724, 1213, 1281
MroI TCCGGA 5 cut(s) 509, 711, 764, 797, 1012
MroXI GAANNNNTTC 1 cut(s) 1434
MseI TTAA 3 cut(s) 585, 723, 1035
MslI CAYNNNNRTG 1 cut(s) 26
MspA1I CMGCKG 1 cut(s) 1448
MspI CCGG 7 cut(s) 356, 510, 696, 712, 765, 798, 1013
MspR9I CCNGG 2 cut(s) 697, 847
MunI CAATTG 1 cut(s) 908
Mva1269I GAATGC 1 cut(s) 632
MvaI CCWGG 1 cut(s) 847
MwoI GCNNNNNNNGC 3 cut(s) 462, 1109, 1358
NciI CCSGG 1 cut(s) 697
NdeII GATC 4 cut(s) 208, 366, 717, 1143
NheI GCTAGC 1 cut(s) 1352
NlaIV GGNNCC 3 cut(s) 601, 1074, 1167
NmuCI GTSAC 1 cut(s) 288
NspI RCATGY 2 cut(s) 421, 819
PaeI GCATGC 1 cut(s) 819
PagI TCATGA 1 cut(s) 406
PcsI WCGNNNNNNNCGW 1 cut(s) 1239
PctI GAATGC 1 cut(s) 632
PdmI GAANNNNTTC 1 cut(s) 1434
PfeI GAWTC 3 cut(s) 794, 833, 983
PinAI ACCGGT 1 cut(s) 355
PkrI GCNGC 2 cut(s) 1447, 1450
PleI GAGTC 4 cut(s) 795, 934, 1156, 1476
PpsI GAGTC 4 cut(s) 795, 934, 1156, 1476
Psp124BI GAGCTC 1 cut(s) 206
Psp6I CCWGG 1 cut(s) 845
PspFI CCCAGC 2 cut(s) 221, 567
PspGI CCWGG 1 cut(s) 845
PspN4I GGNNCC 3 cut(s) 601, 1074, 1167
PspPI GGNCC 2 cut(s) 76, 746
PstNI CAGNNNCTG 1 cut(s) 1448
PsuI RGATCY 1 cut(s) 717
RsaI GTAC 2 cut(s) 707, 860
RsaNI GTAC 2 cut(s) 706, 859
RseI CAYNNNNRTG 1 cut(s) 26
SacI GAGCTC 1 cut(s) 206
SaqAI TTAA 3 cut(s) 585, 723, 1035
SatI GCNGC 2 cut(s) 1446, 1449
Sau3AI GATC 4 cut(s) 208, 366, 717, 1143
Sau96I GGNCC 2 cut(s) 76, 746
SchI GAGTC 4 cut(s) 795, 935, 1157, 1476
ScrFI CCNGG 2 cut(s) 697, 847
SduI GDGCHC 2 cut(s) 206, 1075
SfaNI GCATC 2 cut(s) 894, 1369
SinI GGWCC 1 cut(s) 746
SmiMI CAYNNNNRTG 1 cut(s) 26
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
SphI GCATGC 1 cut(s) 819
Sse9I AATT 7 cut(s) 57, 241, 521, 554, 725, 908, 1056
SsiI CCGC 2 cut(s) 749, 1446
SspMI CTAG 3 cut(s) 86, 686, 1353
SstI GAGCTC 1 cut(s) 206
StyD4I CCNGG 2 cut(s) 695, 845
StyI CCWWGG 1 cut(s) 72
TaaI ACNGT 8 cut(s) 215, 323, 442, 676, 886, 1092, 1200, 1478
TaiI ACGT 1 cut(s) 1212
TaqI TCGA 5 cut(s) 186, 1042, 1062, 1146, 1467
TasI AATT 7 cut(s) 57, 241, 521, 554, 725, 908, 1056
TatI WGTACW 1 cut(s) 858
TauI GCSGC 1 cut(s) 1448
TfiI GAWTC 3 cut(s) 794, 833, 983
Tru1I TTAA 3 cut(s) 585, 723, 1035
Tru9I TTAA 3 cut(s) 585, 723, 1035
TscAI CASTG 4 cut(s) 376, 534, 621, 1483
TseFI GTSAC 1 cut(s) 288
TseI GCWGC 1 cut(s) 1448
Tsp45I GTSAC 1 cut(s) 288
TspGWI ACGGA 1 cut(s) 672
TspRI CASTG 4 cut(s) 376, 534, 621, 1483
VpaK11BI GGWCC 1 cut(s) 746
XapI RAATTY 2 cut(s) 521, 554
XceI RCATGY 2 cut(s) 421, 819
XcmI CCANNNNNNNNNTGG 1 cut(s) 338
XmnI GAANNNNTTC 1 cut(s) 1434
XspI CTAG 3 cut(s) 86, 686, 1353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.