MD11G1021900.v1.1

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0001515
Physical Location & Seq
Forward (+)
1900033 .. 1901502
1470 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1021900.v1.1.491

Sequence Viewer

Length: 1470 bp
ATGTTCCCATTCATGGCACAAGGCCACATAATTCCATTCCTTGCCTTGGCCCAACAACTAGAGCAGAAAAAAGGTTGCACCATAACCCTAATCAACACCCCACTCAATATCAAGAAGCTCAGCTCCTCCCTCCCTCCGAACACCACCATTCGCCTCCTCGAAATCCCTTTCAAGAGCTCCGACCACGGTCTTCCCAGCGACGCTGAAAACACCAATTCCCTATCCTACCATCTCATCCTCAAACTCTTTCAAGCTTCCTTGTCACTCAAGCCTTCTTTCAGAAACCTAATGCACGGTCTTGTCCATGAAAGAAATGGACTGCGCCGACCGGTTTGCATGATCACTGACATCTTCTTTGGGTGGACGATTGAGATAGCTCATGAGTTTGGCATGTCCCATGCTGTGTTCTCCACAGTTGGAGGGTTCGGCATGGCGTGCTATTACTCGTTGTGCTTGCATTTACCTCATCTGAAAGCAAAATCCGGAGAATATGAATTCACACTGCCTGATTTTCCAGAAGCTAAGAAATTTCATATATCCCAGCTCTCAGAAAGTCTTAAACTGAGCAATGGCACCGACCCCTTTTCAGTGTTTGTGCATAAAGCATTCAATGAGTGCATGAAAACTGACGGAATGGTAATCAACACGGTGGAGGAGCTAGACAAAACCGGGCTGATGTACCTCCGAAAGATCTTTAAATTGCCGGTTTGGGCAGTTGGACCGCTTCTTCTATCATCCGGAAATGGGACTAAAAGGGCAGGAAAAGAATCCGGACTCACACCAGAAGCATGCAAAAACTGGCTTGATTCAAAGCCACCCAGGTCAGTTTTGTACATTTCATTTGGTTCTCAAAACACAGTTTCAAAGTCTCAGATGATGCAATTGGCAATGGCATTGGAGTCAAGTGGTAAAAACTTCATTTGGGTTGTTAGGCCACCATTGGAATATGATGTTGATTCAGAGTTCAAGGAGAAGGAGTGGTTTCCGGAAGGGTTCGTGCAGAGGATTAAAGCTCAAAACAAAGGGCTAATTGTCGAAAAATGGGCACCTCAGGTGGAAATACTGTCTCACAAAGCAACCTCTGCTTTTTTGAGCCATTGTGGTTGGAACTCGGTGATCGAGTCCTTTGTTCATGGGGTGCCTTTACTCGGGTGGCCTATGGCTTCAGAACAGTTTTTCAACGTCAAGTATCTGGTGGAGCAAGTCGGAGTTTGCGTGGAAGTAGCGAGGGGGAAGAGTTGTGAGGTTCAGAAGGAAAATATAGTGGCGAAGTTGGAGTTGGTGATGAATGAGACAGAGAAAGGGATGCAAATGAGAAGGAAAGCTAGCGAGGCAAAGGAGATTATTAGGGATGCCATGAAGGATGAGGAGGGATACAAAGGTTGTTCTACTAAAGCTTTGGAAGACTTTCTAACAGCCGCTGCAATGTCATACAGGGTCGAAGAAAACAGTGGACTCAAAACCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

490

Amino Acids

54.85

Weight (kDa)

8.38

Isoelectric Point (pI)

44.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 261 - 432 4.7e-21 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 572, 1045, 1138
AccIII TCCGGA 4 cut(s) 482, 737, 770, 985
AciI CCGC 2 cut(s) 722, 1419
AcsI RAATTY 2 cut(s) 494, 527
AcuI CTGAAG 1 cut(s) 1149
AfaI GTAC 2 cut(s) 680, 833
AfiI CCNNNNNNNGG 4 cut(s) 13, 46, 744, 1148
AgeI ACCGGT 1 cut(s) 328
AgsI TTSAA 7 cut(s) 172, 251, 610, 810, 864, 967, 1180
AjnI CCWGG 1 cut(s) 818
AjuI GAANNNNNNNTTGG 2 cut(s) 1262, 1294
Alw21I GWGCWC 1 cut(s) 179
Alw26I GTCTC 3 cut(s) 873, 1071, 1286
AlwNI CAGNNNCTG 1 cut(s) 1421
Ama87I CYCGRG 1 cut(s) 1148
Aor13HI TCCGGA 4 cut(s) 482, 737, 770, 985
AoxI GGCC 4 cut(s) 22, 48, 932, 1154
ApeKI GCWGC 1 cut(s) 1421
ApoI RAATTY 2 cut(s) 494, 527
ArsI GACNNNNNNTTYG 2 cut(s) 338, 370
AsiGI ACCGGT 1 cut(s) 328
Asp700I GAANNNNTTC 1 cut(s) 1407
AspLEI GCGC 1 cut(s) 324
AspS9I GGNCC 2 cut(s) 49, 719
AsuC2I CCSGG 1 cut(s) 670
AsuHPI GGTGA 2 cut(s) 1126, 1294
AsuNHI GCTAGC 1 cut(s) 1325
AvaI CYCGRG 1 cut(s) 1148
AvaII GGWCC 1 cut(s) 719
AxyI CCTNAGG 1 cut(s) 1050
BaeGI GKGCMC 1 cut(s) 1048
BaeI ACNNNNGTAYC 2 cut(s) 1366, 1399
BanI GGYRCC 3 cut(s) 572, 1045, 1138
BanII GRGCYC 1 cut(s) 179
BbsI GAAGAC 2 cut(s) 182, 1410
Bbv12I GWGCWC 1 cut(s) 179
BbvI GCAGC 1 cut(s) 1408
BccI CCATC 1 cut(s) 237
BcgI CGANNNNNNTGC 2 cut(s) 315, 349
BciT130I CCWGG 1 cut(s) 820
BciVI GTATCC 1 cut(s) 1367
BclI TGATCA 1 cut(s) 339
BcnI CCSGG 1 cut(s) 670
BcoDI GTCTC 3 cut(s) 873, 1071, 1286
BfaI CTAG 3 cut(s) 59, 659, 1326
BfuI GTATCC 1 cut(s) 1367
BglII AGATCT 1 cut(s) 690
BisI GCNGC 2 cut(s) 1419, 1422
BlpI GCTNAGC 1 cut(s) 119
BlsI GCNGC 2 cut(s) 1420, 1423
Bme1390I CCNGG 2 cut(s) 670, 820
Bme18I GGWCC 1 cut(s) 719
BmeT110I CYCGRG 1 cut(s) 1148
BmgT120I GGNCC 2 cut(s) 49, 719
BmiI GGNNCC 3 cut(s) 574, 1047, 1140
BmrFI CCNGG 2 cut(s) 670, 820
BmsI GCATC 3 cut(s) 867, 1296, 1342
BmtI GCTAGC 1 cut(s) 1329
BoxI GACNNNNGTC 1 cut(s) 186
BpiI GAAGAC 2 cut(s) 182, 1410
Bpu1102I GCTNAGC 1 cut(s) 119
BpuEI CTTGAG 1 cut(s) 251
BpuMI CCSGG 1 cut(s) 670
BsaJI CCNNGG 3 cut(s) 45, 184, 818
BsaWI WCCGGW 5 cut(s) 328, 482, 737, 770, 985
BsaXI ACNNNNNCTCC 4 cut(s) 962, 992, 1200, 1230
Bsc4I CCNNNNNNNGG 4 cut(s) 13, 46, 744, 1148
Bse118I RCCGGY 2 cut(s) 328, 703
Bse1I ACTGG 1 cut(s) 803
Bse21I CCTNAGG 1 cut(s) 1050
Bse3DI GCAATG 3 cut(s) 574, 894, 1431
BseAI TCCGGA 4 cut(s) 482, 737, 770, 985
BseBI CCWGG 1 cut(s) 820
BseDI CCNNGG 3 cut(s) 45, 184, 818
BseGI GGATG 5 cut(s) 234, 734, 1311, 1357, 1369
BseLI CCNNNNNNNGG 4 cut(s) 13, 46, 744, 1148
BseMI GCAATG 3 cut(s) 574, 894, 1431
BseMII CTCAG 5 cut(s) 133, 554, 561, 884, 1064
BseNI ACTGG 1 cut(s) 803
BseRI GAGGAG 4 cut(s) 115, 146, 668, 1382
BseSI GKGCMC 1 cut(s) 1048
BseXI GCAGC 1 cut(s) 1408
BseYI CCCAGC 2 cut(s) 194, 540
BsgI GTGCAG 1 cut(s) 1019
Bsh1285I CGRYCG 1 cut(s) 329
BshFI GGCC 4 cut(s) 24, 50, 934, 1156
BshNI GGYRCC 3 cut(s) 572, 1045, 1138
BshTI ACCGGT 1 cut(s) 328
BsiEI CGRYCG 1 cut(s) 329
BsiHKAI GWGCWC 1 cut(s) 179
BsiHKCI CYCGRG 1 cut(s) 1148
BsiSI CCGG 7 cut(s) 329, 483, 669, 704, 738, 771, 986
BslFI GGGAC 2 cut(s) 379, 760
BslI CCNNNNNNNGG 4 cut(s) 13, 46, 744, 1148
BsmAI GTCTC 3 cut(s) 873, 1071, 1286
BsmFI GGGAC 2 cut(s) 379, 760
BsmI GAATGC 1 cut(s) 605
BsnI GGCC 4 cut(s) 24, 50, 934, 1156
BsoBI CYCGRG 1 cut(s) 1148
Bsp1286I GDGCHC 2 cut(s) 179, 1048
Bsp13I TCCGGA 4 cut(s) 482, 737, 770, 985
Bsp1407I TGTACA 1 cut(s) 831
Bsp143I GATC 3 cut(s) 339, 690, 1116
Bsp1720I GCTNAGC 1 cut(s) 119
BspACI CCGC 2 cut(s) 722, 1419
BspANI GGCC 4 cut(s) 24, 50, 934, 1156
BspCNI CTCAG 5 cut(s) 132, 555, 560, 883, 1063
BspEI TCCGGA 4 cut(s) 482, 737, 770, 985
BspHI TCATGA 1 cut(s) 379
BspLI GGNNCC 3 cut(s) 574, 1047, 1140
BspOI GCTAGC 1 cut(s) 1329
BspT107I GGYRCC 3 cut(s) 572, 1045, 1138
BsrDI GCAATG 3 cut(s) 574, 894, 1431
BsrFI RCCGGY 2 cut(s) 328, 703
BsrGI TGTACA 1 cut(s) 831
BsrI ACTGG 1 cut(s) 803
BssAI RCCGGY 2 cut(s) 328, 703
BssECI CCNNGG 3 cut(s) 45, 184, 818
BssMI GATC 3 cut(s) 339, 690, 1116
BssT1I CCWWGG 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 820
Bst4CI ACNGT 8 cut(s) 188, 296, 415, 649, 859, 1065, 1173, 1451
Bst6I CTCTTC 1 cut(s) 1229
BstAPI GCANNNNNTGC 2 cut(s) 435, 1082
BstAUI TGTACA 1 cut(s) 831
BstC8I GCNNGC 4 cut(s) 436, 455, 790, 1327
BstDEI CTNAG 6 cut(s) 119, 522, 547, 563, 870, 1050
BstDSI CCRYGG 1 cut(s) 184
BstF5I GGATG 5 cut(s) 234, 734, 1311, 1357, 1369
BstHHI GCGC 1 cut(s) 324
BstKTI GATC 3 cut(s) 342, 693, 1119
BstMAI GTCTC 3 cut(s) 873, 1071, 1286
BstMBI GATC 3 cut(s) 339, 690, 1116
BstMCI CGRYCG 1 cut(s) 329
BstMWI GCNNNNNNNGC 3 cut(s) 435, 1082, 1331
BstNI CCWGG 1 cut(s) 820
BstNSI RCATGY 2 cut(s) 394, 792
BstPAI GACNNNNGTC 1 cut(s) 186
BstSCI CCNGG 2 cut(s) 668, 818
BstSLI GKGCMC 1 cut(s) 1048
BstV1I GCAGC 1 cut(s) 1408
BstV2I GAAGAC 2 cut(s) 182, 1410
BstX2I RGATCY 1 cut(s) 690
BstYI RGATCY 1 cut(s) 690
Bsu36I CCTNAGG 1 cut(s) 1050
BsuI GTATCC 1 cut(s) 1367
BsuRI GGCC 4 cut(s) 24, 50, 934, 1156
BtgI CCRYGG 1 cut(s) 184
BtsCI GGATG 5 cut(s) 234, 734, 1311, 1357, 1369
BtsI GCAGTG 1 cut(s) 500
BtsIMutI CAGTG 4 cut(s) 342, 500, 594, 1456
Cac8I GCNNGC 4 cut(s) 436, 455, 790, 1327
CaiI CAGNNNCTG 1 cut(s) 1421
CciI TCATGA 1 cut(s) 379
CfoI GCGC 1 cut(s) 324
Cfr10I RCCGGY 2 cut(s) 328, 703
Cfr13I GGNCC 2 cut(s) 49, 719
CseI GACGC 1 cut(s) 209
Csp6I GTAC 2 cut(s) 679, 832
CspAI ACCGGT 1 cut(s) 328
CviQI GTAC 2 cut(s) 679, 832
DdeI CTNAG 6 cut(s) 119, 522, 547, 563, 870, 1050
DpnI GATC 3 cut(s) 341, 692, 1118
DpnII GATC 3 cut(s) 339, 690, 1116
DraI TTTAAA 1 cut(s) 697
Eam1104I CTCTTC 1 cut(s) 1229
EarI CTCTTC 1 cut(s) 1229
Ecl136II GAGCTC 1 cut(s) 177
Eco130I CCWWGG 1 cut(s) 45
Eco24I GRGCYC 1 cut(s) 179
Eco47I GGWCC 1 cut(s) 719
Eco53kI GAGCTC 1 cut(s) 177
Eco57I CTGAAG 1 cut(s) 1149
Eco81I CCTNAGG 1 cut(s) 1050
Eco88I CYCGRG 1 cut(s) 1148
EcoICRI GAGCTC 1 cut(s) 177
EcoRI GAATTC 1 cut(s) 494
EcoRII CCWGG 1 cut(s) 818
EcoT14I CCWWGG 1 cut(s) 45
EcoT38I GRGCYC 1 cut(s) 179
ErhI CCWWGG 1 cut(s) 45
FaqI GGGAC 2 cut(s) 379, 760
FbaI TGATCA 1 cut(s) 339
Fnu4HI GCNGC 2 cut(s) 1419, 1422
FokI GGATG 5 cut(s) 221, 721, 1318, 1364, 1376
FriOI GRGCYC 1 cut(s) 179
Fsp4HI GCNGC 2 cut(s) 1419, 1422
FspBI CTAG 3 cut(s) 59, 659, 1326
GlaI GCGC 1 cut(s) 323
GluI GCNGC 2 cut(s) 1419, 1422
GsaI CCCAGC 2 cut(s) 198, 544
HaeIII GGCC 4 cut(s) 24, 50, 934, 1156
HapII CCGG 7 cut(s) 329, 483, 669, 704, 738, 771, 986
HgaI GACGC 1 cut(s) 209
HhaI GCGC 1 cut(s) 324
Hin6I GCGC 1 cut(s) 322
HinP1I GCGC 1 cut(s) 322
HindIII AAGCTT 2 cut(s) 252, 1395
HinfI GANTC 7 cut(s) 767, 774, 806, 899, 956, 1121, 1455
HpaII CCGG 7 cut(s) 329, 483, 669, 704, 738, 771, 986
HphI GGTGA 2 cut(s) 1126, 1294
Hpy166II GTNNAC 2 cut(s) 363, 1454
Hpy188III TCNNGA 8 cut(s) 112, 172, 380, 483, 515, 738, 771, 986
Hpy8I GTNNAC 2 cut(s) 363, 1454
Hpy99I CGWCG 1 cut(s) 203
HpyAV CCTTC 6 cut(s) 282, 967, 983, 1246, 1311, 1354
HpyCH4III ACNGT 8 cut(s) 188, 296, 415, 649, 859, 1065, 1173, 1451
HpyCH4IV ACGT 1 cut(s) 1182
HpyF10VI GCNNNNNNNGC 3 cut(s) 435, 1082, 1331
HpyF3I CTNAG 6 cut(s) 119, 522, 547, 563, 870, 1050
HpySE526I ACGT 1 cut(s) 1182
HspAI GCGC 1 cut(s) 322
Kpn2I TCCGGA 4 cut(s) 482, 737, 770, 985
Ksp22I TGATCA 1 cut(s) 339
Kzo9I GATC 3 cut(s) 339, 690, 1116
LmnI GCTCC 4 cut(s) 128, 182, 655, 1198
Lsp1109I GCAGC 1 cut(s) 1408
LweI GCATC 3 cut(s) 867, 1296, 1342
MaeI CTAG 3 cut(s) 59, 659, 1326
MaeII ACGT 1 cut(s) 1182
MaeIII GTNAC 1 cut(s) 261
MalI GATC 3 cut(s) 341, 692, 1118
MboI GATC 3 cut(s) 339, 690, 1116
MboII GAAGA 6 cut(s) 182, 343, 719, 1246, 1415, 1454
MfeI CAATTG 1 cut(s) 881
MflI RGATCY 1 cut(s) 690
MhlI GDGCHC 2 cut(s) 179, 1048
MluCI AATT 7 cut(s) 30, 214, 494, 527, 698, 881, 1029
MlyI GAGTC 4 cut(s) 768, 908, 1130, 1449
MmeI TCCRAC 6 cut(s) 204, 397, 697, 1085, 1186, 1254
MroI TCCGGA 4 cut(s) 482, 737, 770, 985
MroXI GAANNNNTTC 1 cut(s) 1407
MseI TTAA 3 cut(s) 558, 696, 1008
MspA1I CMGCKG 1 cut(s) 1421
MspI CCGG 7 cut(s) 329, 483, 669, 704, 738, 771, 986
MspR9I CCNGG 2 cut(s) 670, 820
MunI CAATTG 1 cut(s) 881
Mva1269I GAATGC 1 cut(s) 605
MvaI CCWGG 1 cut(s) 820
MwoI GCNNNNNNNGC 3 cut(s) 435, 1082, 1331
NciI CCSGG 1 cut(s) 670
NdeII GATC 3 cut(s) 339, 690, 1116
NheI GCTAGC 1 cut(s) 1325
NlaIV GGNNCC 3 cut(s) 574, 1047, 1140
NmuCI GTSAC 1 cut(s) 261
NspI RCATGY 2 cut(s) 394, 792
PaeI GCATGC 1 cut(s) 792
PagI TCATGA 1 cut(s) 379
PcsI WCGNNNNNNNCGW 1 cut(s) 1212
PctI GAATGC 1 cut(s) 605
PdmI GAANNNNTTC 1 cut(s) 1407
PfeI GAWTC 3 cut(s) 767, 806, 956
PinAI ACCGGT 1 cut(s) 328
PkrI GCNGC 2 cut(s) 1420, 1423
PleI GAGTC 4 cut(s) 768, 907, 1129, 1449
PpsI GAGTC 4 cut(s) 768, 907, 1129, 1449
PshAI GACNNNNGTC 1 cut(s) 186
Psp124BI GAGCTC 1 cut(s) 179
Psp6I CCWGG 1 cut(s) 818
PspFI CCCAGC 2 cut(s) 194, 540
PspGI CCWGG 1 cut(s) 818
PspN4I GGNNCC 3 cut(s) 574, 1047, 1140
PspPI GGNCC 2 cut(s) 49, 719
PstNI CAGNNNCTG 1 cut(s) 1421
PsuI RGATCY 1 cut(s) 690
RsaI GTAC 2 cut(s) 680, 833
RsaNI GTAC 2 cut(s) 679, 832
SacI GAGCTC 1 cut(s) 179
SaqAI TTAA 3 cut(s) 558, 696, 1008
SatI GCNGC 2 cut(s) 1419, 1422
Sau3AI GATC 3 cut(s) 339, 690, 1116
Sau96I GGNCC 2 cut(s) 49, 719
SchI GAGTC 4 cut(s) 768, 908, 1130, 1449
ScrFI CCNGG 2 cut(s) 670, 820
SduI GDGCHC 2 cut(s) 179, 1048
SfaNI GCATC 3 cut(s) 867, 1296, 1342
SinI GGWCC 1 cut(s) 719
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
SphI GCATGC 1 cut(s) 792
Sse9I AATT 7 cut(s) 30, 214, 494, 527, 698, 881, 1029
SsiI CCGC 2 cut(s) 722, 1419
SspMI CTAG 3 cut(s) 59, 659, 1326
SstI GAGCTC 1 cut(s) 179
StyD4I CCNGG 2 cut(s) 668, 818
StyI CCWWGG 1 cut(s) 45
TaaI ACNGT 8 cut(s) 188, 296, 415, 649, 859, 1065, 1173, 1451
TaiI ACGT 1 cut(s) 1185
TaqI TCGA 4 cut(s) 159, 1035, 1119, 1440
TasI AATT 7 cut(s) 30, 214, 494, 527, 698, 881, 1029
TatI WGTACW 1 cut(s) 831
TauI GCSGC 1 cut(s) 1421
TfiI GAWTC 3 cut(s) 767, 806, 956
Tru1I TTAA 3 cut(s) 558, 696, 1008
Tru9I TTAA 3 cut(s) 558, 696, 1008
TscAI CASTG 4 cut(s) 349, 507, 594, 1456
TseFI GTSAC 1 cut(s) 261
TseI GCWGC 1 cut(s) 1421
Tsp45I GTSAC 1 cut(s) 261
TspDTI ATGAA 9 cut(s) 321, 507, 521, 635, 828, 907, 1121, 1301, 1373
TspGWI ACGGA 1 cut(s) 645
TspRI CASTG 4 cut(s) 349, 507, 594, 1456
VpaK11BI GGWCC 1 cut(s) 719
XapI RAATTY 2 cut(s) 494, 527
XceI RCATGY 2 cut(s) 394, 792
XcmI CCANNNNNNNNNTGG 1 cut(s) 311
XmnI GAANNNNTTC 1 cut(s) 1407
XspI CTAG 3 cut(s) 59, 659, 1326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.