RCHIOBHM_CHR0C23G0500731

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_chinensis
Unknown
OG0001515
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 210 bp
ATGGTGGAGAGCTTGAGTAGAGAGGTGCCGATCATCAATTGGCCGCTCGCTGTGAAGCAGGCTTTTAACTCGAAGTTGTTGGCAGAGGAGATGGGTGTGAGTGTGGAGCTGACGAGGAATGTGAAGAGTAATGCGGTGGCGGAGGAGGTAAGGAGAGTGATTGAGTTGATGGTGGATGAGAGTGGGGAAGGAGGTGAGGAGAGTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

69

Amino Acids

7.62

Weight (kDa)

4.46

Isoelectric Point (pI)

51.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 25
AccBSI CCGCTC 1 cut(s) 46
AciI CCGC 3 cut(s) 44, 134, 140
AcoI YGGCCR 1 cut(s) 41
AluBI AGCT 2 cut(s) 12, 109
AluI AGCT 2 cut(s) 12, 109
AoxI GGCC 1 cut(s) 41
AsuHPI GGTGA 1 cut(s) 206
BanI GGYRCC 1 cut(s) 25
BccI CCATC 2 cut(s) 85, 163
BisI GCNGC 1 cut(s) 44
BlsI GCNGC 1 cut(s) 45
BmiI GGNNCC 1 cut(s) 27
BpuEI CTTGAG 1 cut(s) 34
BseGI GGATG 1 cut(s) 181
BseRI GAGGAG 2 cut(s) 101, 158
BshFI GGCC 1 cut(s) 43
BshNI GGYRCC 1 cut(s) 25
BsnI GGCC 1 cut(s) 43
Bsp143I GATC 1 cut(s) 30
BspACI CCGC 3 cut(s) 44, 134, 140
BspANI GGCC 1 cut(s) 43
BspLI GGNNCC 1 cut(s) 27
BspT107I GGYRCC 1 cut(s) 25
BsrBI CCGCTC 1 cut(s) 46
BssMI GATC 1 cut(s) 30
Bst6I CTCTTC 1 cut(s) 119
BstC8I GCNNGC 2 cut(s) 48, 60
BstF5I GGATG 1 cut(s) 181
BstKTI GATC 1 cut(s) 33
BstMBI GATC 1 cut(s) 30
BsuRI GGCC 1 cut(s) 43
BtsCI GGATG 1 cut(s) 181
Cac8I GCNNGC 2 cut(s) 48, 60
CviJI RGCY 4 cut(s) 12, 43, 62, 109
CviKI_1 RGCY 4 cut(s) 12, 43, 62, 109
DpnI GATC 1 cut(s) 32
DpnII GATC 1 cut(s) 30
EaeI YGGCCR 1 cut(s) 41
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
EciI GGCGGA 1 cut(s) 155
Fnu4HI GCNGC 1 cut(s) 44
FokI GGATG 1 cut(s) 188
Fsp4HI GCNGC 1 cut(s) 44
GluI GCNGC 1 cut(s) 44
HaeIII GGCC 1 cut(s) 43
HphI GGTGA 1 cut(s) 206
HpyAV CCTTC 1 cut(s) 182
Kzo9I GATC 1 cut(s) 30
LmnI GCTCC 1 cut(s) 106
LpnPI CCDG 1 cut(s) 44
MalI GATC 1 cut(s) 32
MbiI CCGCTC 1 cut(s) 46
MboI GATC 1 cut(s) 30
MboII GAAGA 1 cut(s) 136
MfeI CAATTG 1 cut(s) 37
MluCI AATT 1 cut(s) 37
MnlI CCTC 7 cut(s) 16, 79, 108, 136, 139, 185, 190
MseI TTAA 1 cut(s) 66
MunI CAATTG 1 cut(s) 37
NdeII GATC 1 cut(s) 30
NlaIV GGNNCC 1 cut(s) 27
PkrI GCNGC 1 cut(s) 45
PspN4I GGNNCC 1 cut(s) 27
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 1 cut(s) 44
Sau3AI GATC 1 cut(s) 30
SetI ASST 5 cut(s) 14, 27, 111, 150, 196
SgeI CNNG 5 cut(s) 25, 59, 71, 82, 126
SmlI CTYRAG 1 cut(s) 13
SmoI CTYRAG 1 cut(s) 13
Sse9I AATT 1 cut(s) 37
SsiI CCGC 3 cut(s) 44, 134, 140
TaqI TCGA 1 cut(s) 71
TasI AATT 1 cut(s) 37
TauI GCSGC 1 cut(s) 46
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.