MD04G1033600.v1.1

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0001515
Physical Location & Seq
Forward (+)
3797597 .. 3802665
5069 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1033600.v1.1.491

Sequence Viewer

Length: 1542 bp
ATGCTGCCATTCATGGCTCAAGGCCATATCATACCATTCCTATCACTTGCAAAGCAAATCCAGCAGTCAACAAACTTCTCAATCACCATCGCCACCACCCCTCTCAACATCAAATCCCTCCAATCCACCATTTCCTCCGCCTCATCCAATCACAACAACATCCACTTGGCCGAACTTCCCTTCTGCAGCTCAGACCACGACCTCCCCCCTAACACAGAGACCACAGAGAACCTCCCCCTCTCCAAAATGATCAACTTTTTAGTCGCCTCACTCAGCCTCGAACCTCCTGCTCGACGCCTTATCACTGATATCATCAAAAGGGAAGGCCGCCCGCCGCTCTGTTTGATCTCGGACGTATTCTTCGGATGGGCTACCGATCTTGCAAACAGCTTAGGCACTGTCAATGTGAGTTTCACCACAGGCGGGGCTTACGGCACTGCAGCCTACACATCAATCTGGCTCAACCTCCCTCATCGCTCCGCAAGCAGCGAATACTTCACCGTCCCCGGCTTCCCGGAACACGGCAGGTTCCACATCTCTCAGCTGAATCCGTTTGTAAGAGCTGCAGACGGTACAGAATCTTGGTCAAAATTTTTCCAGCCCCAGATTTCGGGTTCTACAAAATCATTTGGTTGGCTGTGTAATACTGTGGAGGAAATTGAGCCGTTGGGATTGGATATCTTGAGGGATAACTTGAAGCTTCCGGTTTGGTGCATTGGTCCTCTAGTACCTAATGATGCACTCAAAAACTCATCCGCATTGGACTTAAAGGTCTCGAGGCAGCGCACCGGAAAAGAAATGGGCTTTTCCGCAGAGAAATGCCTCGAGTGGCTTGACTCGCAAGGTTCGAATTCTGTAATTTACATCTCATTTGGTTCTCAGAACACAATCAGTGCAACCCAAATGATGGAATTGGCTGTTGGGTTGGAAGAAAGCGGAAAACCTTTCGTTTGGGTGATAAGGCCTCCGGTGGGGTTTGATCTGAAGGGAGAGTTCAAAGCAGAGTGGCTGCCTAACGGGTTTGAGGAAAGAATGAGTAAACGAAAACAGGGAGCAGAGTGGCTGCCGCACGGGTTTGAGGAAAGAATGAGTAAACGAAAACAGGGGTTGCTAGTGCACAACTGGGCACCCCAGTTGGAGATTTTGTCACACAAATCCACAGGGGTTTTTGTGAGCCATTGCGGGTGGAATTCAGTGATGGAGAGCTTGAGCCAGGGCGTGCCGATTGTGGGGTGGCCGTTGGCGGCGGAGCAGGCTTATAATTCGAAGATGTTGGTGGAGGAGATGGGTGTGAGTGTGGAGCTGACAAGGGGTGTGCAGAGTAATATTGGATGGAAGGAGGTGATTGATCTGGTGATGGACGAGAGTGGGAAGGGAGGGGAGATGAGGAAAAATGCAGGTGAGATTAAGAAGAAGATAAGAGGATCAATTAGAGATAATGATGGTGATCAAGGAAAGGAGAAGGGGTCTTCTGTTAAAGCAATGGAGGATTTTGTGGCTGCTCTTTTATCAAAGAAACAAGATTTGGTAAAAATCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

514

Amino Acids

56.64

Weight (kDa)

6.3

Isoelectric Point (pI)

48.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_N PF26168 1 - 244 2.3e-06 Glycosyltransferase, N-terminal domain
UDPGT PF00201 275 - 455 1.4e-19 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1260
AarI CACCTGC 1 cut(s) 1388
AasI GACNNNNNNGTC 1 cut(s) 770
Acc36I ACCTGC 2 cut(s) 516, 1388
AccB1I GGYRCC 1 cut(s) 1126
AccB7I CCANNNNNTGG 1 cut(s) 907
AccBSI CCGCTC 1 cut(s) 337
AclWI GGATC 1 cut(s) 1432
AcoI YGGCCR 2 cut(s) 168, 1235
AcsI RAATTY 3 cut(s) 590, 850, 1189
AcuI CTGAAG 1 cut(s) 1004
AcyI GRCGYC 1 cut(s) 295
AfaI GTAC 2 cut(s) 574, 729
AfiI CCNNNNNNNGG 6 cut(s) 423, 521, 610, 907, 971, 1229
AgsI TTSAA 2 cut(s) 697, 997
AjnI CCWGG 1 cut(s) 1212
AjuI GAANNNNNNNTTGG 4 cut(s) 903, 935, 1508, 1540
AluBI AGCT 7 cut(s) 189, 390, 544, 563, 700, 1206, 1303
AluI AGCT 7 cut(s) 189, 390, 544, 563, 700, 1206, 1303
Alw21I GWGCWC 1 cut(s) 1119
Alw26I GTCTC 2 cut(s) 212, 778
Alw44I GTGCAC 1 cut(s) 1115
AlwI GGATC 1 cut(s) 1432
Ama87I CYCGRG 2 cut(s) 775, 824
AoxI GGCC 5 cut(s) 22, 168, 325, 962, 1235
ApaLI GTGCAC 1 cut(s) 1115
ApeKI GCWGC 9 cut(s) 4, 186, 440, 486, 563, 781, 1009, 1063, 1499
ApoI RAATTY 3 cut(s) 590, 850, 1189
ArsI GACNNNNNNTTYG 2 cut(s) 344, 376
AspLEI GCGC 1 cut(s) 786
AspS9I GGNCC 1 cut(s) 719
AsuC2I CCSGG 2 cut(s) 507, 515
AsuHPI GGTGA 8 cut(s) 76, 406, 490, 967, 1354, 1366, 1412, 1457
AsuII TTCGAA 2 cut(s) 848, 1265
AvaI CYCGRG 2 cut(s) 775, 824
AvaII GGWCC 1 cut(s) 719
BaeGI GKGCMC 2 cut(s) 1119, 1129
BanI GGYRCC 1 cut(s) 1126
BbsI GAAGAC 1 cut(s) 1461
Bbv12I GWGCWC 1 cut(s) 1119
BbvI GCAGC 8 cut(s) 198, 452, 498, 550, 793, 996, 1050, 1486
BccI CCATC 8 cut(s) 95, 360, 901, 1192, 1279, 1326, 1351, 1436
BceAI ACGGC 4 cut(s) 448, 538, 649, 1222
BcgI CGANNNNNNTGC 2 cut(s) 269, 303
BciT130I CCWGG 1 cut(s) 1214
BclI TGATCA 2 cut(s) 249, 1447
BcnI CCSGG 2 cut(s) 507, 515
BcoDI GTCTC 2 cut(s) 212, 778
BfaI CTAG 2 cut(s) 725, 1112
BfmI CTRYAG 3 cut(s) 184, 438, 564
BfuAI ACCTGC 2 cut(s) 516, 1388
Bme1390I CCNGG 3 cut(s) 507, 515, 1214
Bme18I GGWCC 1 cut(s) 719
BmeT110I CYCGRG 2 cut(s) 775, 824
BmgT120I GGNCC 1 cut(s) 719
BmiI GGNNCC 2 cut(s) 530, 1128
BmrFI CCNGG 3 cut(s) 507, 515, 1214
BmrI ACTGGG 2 cut(s) 1126, 1132
BmsI GCATC 1 cut(s) 727
BmuI ACTGGG 2 cut(s) 1126, 1132
BpiI GAAGAC 1 cut(s) 1461
Bpu10I CCTNAGC 1 cut(s) 391
Bpu14I TTCGAA 2 cut(s) 848, 1265
BpuEI CTTGAG 2 cut(s) 703, 1228
BpuMI CCSGG 2 cut(s) 507, 515
BsaBI GATNNNNATC 1 cut(s) 1446
BsaHI GRCGYC 1 cut(s) 295
BsaI GGTCTC 2 cut(s) 212, 778
BsaJI CCNNGG 2 cut(s) 505, 1213
BsaWI WCCGGW 3 cut(s) 703, 788, 967
BsaXI ACNNNNNCTCC 4 cut(s) 1130, 1160, 1451, 1481
Bsc4I CCNNNNNNNGG 6 cut(s) 423, 521, 610, 907, 971, 1229
Bse1I ACTGG 2 cut(s) 1127, 1132
Bse3DI GCAATG 2 cut(s) 1177, 1488
Bse8I GATNNNNATC 1 cut(s) 1446
BseBI CCWGG 1 cut(s) 1214
BseDI CCNNGG 2 cut(s) 505, 1213
BseGI GGATG 5 cut(s) 143, 159, 371, 752, 1337
BseJI GATNNNNATC 1 cut(s) 1446
BseLI CCNNNNNNNGG 6 cut(s) 423, 521, 610, 907, 971, 1229
BseMI GCAATG 2 cut(s) 1177, 1488
BseMII CTCAG 4 cut(s) 204, 286, 554, 893
BseNI ACTGG 2 cut(s) 1127, 1132
BseRI GAGGAG 1 cut(s) 1295
BseSI GKGCMC 2 cut(s) 1119, 1129
BseXI GCAGC 8 cut(s) 198, 452, 498, 550, 793, 996, 1050, 1486
BsgI GTGCAG 1 cut(s) 1337
BshFI GGCC 5 cut(s) 24, 170, 327, 964, 1237
BshNI GGYRCC 1 cut(s) 1126
BsiHKAI GWGCWC 1 cut(s) 1119
BsiHKCI CYCGRG 2 cut(s) 775, 824
BsiSI CCGG 5 cut(s) 507, 515, 704, 789, 968
BslFI GGGAC 1 cut(s) 488
BslI CCNNNNNNNGG 6 cut(s) 423, 521, 610, 907, 971, 1229
BsmAI GTCTC 2 cut(s) 212, 778
BsmFI GGGAC 1 cut(s) 488
BsnI GGCC 5 cut(s) 24, 170, 327, 964, 1237
Bso31I GGTCTC 2 cut(s) 212, 778
BsoBI CYCGRG 2 cut(s) 775, 824
Bsp119I TTCGAA 2 cut(s) 848, 1265
Bsp1286I GDGCHC 2 cut(s) 1119, 1129
Bsp143I GATC 7 cut(s) 249, 345, 376, 979, 1348, 1424, 1447
BspANI GGCC 5 cut(s) 24, 170, 327, 964, 1237
BspCNI CTCAG 4 cut(s) 203, 285, 553, 892
BspLI GGNNCC 2 cut(s) 530, 1128
BspMAI CTGCAG 3 cut(s) 188, 442, 568
BspMI ACCTGC 2 cut(s) 516, 1388
BspPI GGATC 1 cut(s) 1432
BspT104I TTCGAA 2 cut(s) 848, 1265
BspT107I GGYRCC 1 cut(s) 1126
BspTNI GGTCTC 2 cut(s) 212, 778
BsrBI CCGCTC 1 cut(s) 337
BsrDI GCAATG 2 cut(s) 1177, 1488
BsrI ACTGG 2 cut(s) 1127, 1132
BssECI CCNNGG 2 cut(s) 505, 1213
BssMI GATC 7 cut(s) 249, 345, 376, 979, 1348, 1424, 1447
BssNI GRCGYC 1 cut(s) 295
Bst2UI CCWGG 1 cut(s) 1214
Bst4CI ACNGT 4 cut(s) 400, 502, 572, 649
BstACI GRCGYC 1 cut(s) 295
BstBI TTCGAA 2 cut(s) 848, 1265
BstC8I GCNNGC 4 cut(s) 332, 484, 1220, 1254
BstDEI CTNAG 5 cut(s) 190, 272, 391, 540, 879
BstF5I GGATG 5 cut(s) 143, 159, 371, 752, 1337
BstHHI GCGC 1 cut(s) 786
BstKTI GATC 7 cut(s) 252, 348, 379, 982, 1351, 1427, 1450
BstMAI GTCTC 2 cut(s) 212, 778
BstMBI GATC 7 cut(s) 249, 345, 376, 979, 1348, 1424, 1447
BstMWI GCNNNNNNNGC 4 cut(s) 61, 483, 838, 1253
BstNI CCWGG 1 cut(s) 1214
BstSCI CCNGG 3 cut(s) 505, 513, 1212
BstSFI CTRYAG 3 cut(s) 184, 438, 564
BstSLI GKGCMC 2 cut(s) 1119, 1129
BstV1I GCAGC 8 cut(s) 198, 452, 498, 550, 793, 996, 1050, 1486
BstV2I GAAGAC 1 cut(s) 1461
BsuRI GGCC 5 cut(s) 24, 170, 327, 964, 1237
BtgZI GCGATG 2 cut(s) 73, 458
BtsCI GGATG 5 cut(s) 143, 159, 371, 752, 1337
BtsI GCAGTG 1 cut(s) 435
BtsIMutI CAGTG 5 cut(s) 303, 396, 435, 898, 1200
BveI ACCTGC 2 cut(s) 516, 1388
Cac8I GCNNGC 4 cut(s) 332, 484, 1220, 1254
CfoI GCGC 1 cut(s) 786
Cfr13I GGNCC 1 cut(s) 719
CseI GACGC 1 cut(s) 303
Csp6I GTAC 2 cut(s) 573, 728
CviAII CATG 1 cut(s) 13
CviQI GTAC 2 cut(s) 573, 728
DdeI CTNAG 5 cut(s) 190, 272, 391, 540, 879
DpnI GATC 7 cut(s) 251, 347, 378, 981, 1350, 1426, 1449
DpnII GATC 7 cut(s) 249, 345, 376, 979, 1348, 1424, 1447
DrdI GACNNNNNNGTC 1 cut(s) 770
DseDI GACNNNNNNGTC 1 cut(s) 770
EaeI YGGCCR 2 cut(s) 168, 1235
EciI GGCGGA 2 cut(s) 127, 1262
Eco147I AGGCCT 1 cut(s) 964
Eco31I GGTCTC 2 cut(s) 212, 778
Eco32I GATATC 2 cut(s) 310, 679
Eco47I GGWCC 1 cut(s) 719
Eco57I CTGAAG 1 cut(s) 1004
Eco88I CYCGRG 2 cut(s) 775, 824
EcoRI GAATTC 2 cut(s) 850, 1189
EcoRII CCWGG 1 cut(s) 1212
EcoRV GATATC 2 cut(s) 310, 679
FaeI CATG 1 cut(s) 16
FaiI YATR 4 cut(s) 14, 27, 32, 1260
FaqI GGGAC 1 cut(s) 488
FatI CATG 1 cut(s) 12
FauI CCCGC 3 cut(s) 339, 416, 1175
FbaI TGATCA 2 cut(s) 249, 1447
FokI GGATG 5 cut(s) 130, 146, 378, 739, 1344
FspBI CTAG 2 cut(s) 725, 1112
GlaI GCGC 1 cut(s) 785
HaeIII GGCC 5 cut(s) 24, 170, 327, 964, 1237
HapII CCGG 5 cut(s) 507, 515, 704, 789, 968
HgaI GACGC 1 cut(s) 303
HhaI GCGC 1 cut(s) 786
Hin1I GRCGYC 1 cut(s) 295
Hin1II CATG 1 cut(s) 16
Hin6I GCGC 1 cut(s) 784
HinP1I GCGC 1 cut(s) 784
HincII GTYRAC 1 cut(s) 69
HindII GTYRAC 1 cut(s) 69
HindIII AAGCTT 1 cut(s) 698
HinfI GANTC 3 cut(s) 547, 578, 836
HpaII CCGG 5 cut(s) 507, 515, 704, 789, 968
HphI GGTGA 8 cut(s) 76, 406, 490, 967, 1354, 1366, 1412, 1457
Hpy166II GTNNAC 4 cut(s) 69, 1040, 1094, 1117
Hpy188I TCNGA 5 cut(s) 193, 352, 365, 882, 984
Hpy188III TCNNGA 2 cut(s) 682, 775
Hpy8I GTNNAC 4 cut(s) 69, 1040, 1094, 1117
Hpy99I CGWCG 1 cut(s) 297
HpyAV CCTTC 6 cut(s) 190, 317, 979, 1330, 1366, 1456
HpyCH4III ACNGT 4 cut(s) 400, 502, 572, 649
HpyCH4IV ACGT 1 cut(s) 354
HpyF10VI GCNNNNNNNGC 4 cut(s) 61, 483, 838, 1253
HpyF3I CTNAG 5 cut(s) 190, 272, 391, 540, 879
HpySE526I ACGT 1 cut(s) 354
Hsp92I GRCGYC 1 cut(s) 295
Hsp92II CATG 1 cut(s) 16
HspAI GCGC 1 cut(s) 784
Ksp22I TGATCA 2 cut(s) 249, 1447
Kzo9I GATC 7 cut(s) 249, 345, 376, 979, 1348, 1424, 1447
LmnI GCTCC 4 cut(s) 482, 1052, 1249, 1300
Lsp1109I GCAGC 8 cut(s) 198, 452, 498, 550, 793, 996, 1050, 1486
LweI GCATC 1 cut(s) 727
MaeI CTAG 2 cut(s) 725, 1112
MaeII ACGT 1 cut(s) 354
MaeIII GTNAC 1 cut(s) 1146
MalI GATC 7 cut(s) 251, 347, 378, 981, 1350, 1426, 1449
MbiI CCGCTC 1 cut(s) 337
MboI GATC 7 cut(s) 249, 345, 376, 979, 1348, 1424, 1447
MboII GAAGA 6 cut(s) 352, 941, 1279, 1423, 1426, 1461
MhlI GDGCHC 2 cut(s) 1119, 1129
MluCI AATT 9 cut(s) 590, 657, 850, 858, 911, 1189, 1261, 1428, 1537
MlyI GAGTC 1 cut(s) 830
MmeI TCCRAC 2 cut(s) 906, 1116
MseI TTAA 3 cut(s) 767, 1407, 1476
MspA1I CMGCKG 1 cut(s) 544
MspI CCGG 5 cut(s) 507, 515, 704, 789, 968
MspR9I CCNGG 3 cut(s) 507, 515, 1214
MvaI CCWGG 1 cut(s) 1214
MwoI GCNNNNNNNGC 4 cut(s) 61, 483, 838, 1253
NciI CCSGG 2 cut(s) 507, 515
NdeII GATC 7 cut(s) 249, 345, 376, 979, 1348, 1424, 1447
NlaIII CATG 1 cut(s) 16
NlaIV GGNNCC 2 cut(s) 530, 1128
NmuCI GTSAC 1 cut(s) 1146
NspV TTCGAA 2 cut(s) 848, 1265
PaeR7I CTCGAG 2 cut(s) 775, 824
PaqCI CACCTGC 1 cut(s) 1388
PceI AGGCCT 1 cut(s) 964
PcsI WCGNNNNNNNCGW 1 cut(s) 845
PfeI GAWTC 2 cut(s) 547, 578
PflMI CCANNNNNTGG 1 cut(s) 907
PfoI TCCNGGA 1 cut(s) 513
PleI GAGTC 1 cut(s) 830
PpsI GAGTC 1 cut(s) 830
PsiI TTATAA 1 cut(s) 1260
Psp6I CCWGG 1 cut(s) 1212
PspGI CCWGG 1 cut(s) 1212
PspN4I GGNNCC 2 cut(s) 530, 1128
PspPI GGNCC 1 cut(s) 719
PspXI VCTCGAGB 1 cut(s) 824
PstI CTGCAG 3 cut(s) 188, 442, 568
PvuII CAGCTG 1 cut(s) 544
RsaI GTAC 2 cut(s) 574, 729
RsaNI GTAC 2 cut(s) 573, 728
SaqAI TTAA 3 cut(s) 767, 1407, 1476
Sau3AI GATC 7 cut(s) 249, 345, 376, 979, 1348, 1424, 1447
Sau96I GGNCC 1 cut(s) 719
SchI GAGTC 1 cut(s) 830
ScrFI CCNGG 3 cut(s) 507, 515, 1214
SduI GDGCHC 2 cut(s) 1119, 1129
SfaNI GCATC 1 cut(s) 727
SfcI CTRYAG 3 cut(s) 184, 438, 564
Sfr274I CTCGAG 2 cut(s) 775, 824
SfuI TTCGAA 2 cut(s) 848, 1265
SinI GGWCC 1 cut(s) 719
SlaI CTCGAG 2 cut(s) 775, 824
SmlI CTYRAG 5 cut(s) 18, 682, 775, 824, 1207
SmoI CTYRAG 5 cut(s) 18, 682, 775, 824, 1207
Sse9I AATT 9 cut(s) 590, 657, 850, 858, 911, 1189, 1261, 1428, 1537
SseBI AGGCCT 1 cut(s) 964
SspI AATATT 1 cut(s) 1327
SspMI CTAG 2 cut(s) 725, 1112
StuI AGGCCT 1 cut(s) 964
StyD4I CCNGG 3 cut(s) 505, 513, 1212
TaaI ACNGT 4 cut(s) 400, 502, 572, 649
TaiI ACGT 1 cut(s) 357
TaqI TCGA 6 cut(s) 279, 292, 776, 825, 848, 1265
TasI AATT 9 cut(s) 590, 657, 850, 858, 911, 1189, 1261, 1428, 1537
TauI GCSGC 4 cut(s) 330, 337, 1069, 1247
TfiI GAWTC 2 cut(s) 547, 578
Tru1I TTAA 3 cut(s) 767, 1407, 1476
Tru9I TTAA 3 cut(s) 767, 1407, 1476
TscAI CASTG 5 cut(s) 310, 403, 442, 898, 1200
TseFI GTSAC 1 cut(s) 1146
TseI GCWGC 9 cut(s) 4, 186, 440, 486, 563, 781, 1009, 1063, 1499
Tsp45I GTSAC 1 cut(s) 1146
TspGWI ACGGA 1 cut(s) 540
TspRI CASTG 5 cut(s) 310, 403, 442, 898, 1200
Van91I CCANNNNNTGG 1 cut(s) 907
VneI GTGCAC 1 cut(s) 1115
VpaK11BI GGWCC 1 cut(s) 719
XapI RAATTY 3 cut(s) 590, 850, 1189
XhoI CTCGAG 2 cut(s) 775, 824
XspI CTAG 2 cut(s) 725, 1112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.