Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001669.1

Orthogroup ID

OG0001515

Physical Location & Seq

Genomic Coordinates Forward (+)

237930 .. 238349

Gene Structure 420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001669.1_g000053.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

atgtgcaacatcgttgaagaaatcgagctgttcggattgaaagtgttgcgaaattacatcaagctccctgtttggtccattttagcttccaacatttccagcaaaaaatattccagcaagaaatggggaatttcagcagagaaatgcaccgagtggcttgactcgcacagtgccgattcggtggggtacatctcgtttggttctcagaacacgatcagcgcatcccagatgatggaattggcaaaaggtttggaaaagagcgggaagccttttgtctgggtcacaaggccaccggtggggcacgacatgaagggtgatttccgatcggaatggctgccggagcgttttgtggagcaaataatgttggaatatatttgtaaaattttgattgcttctactttgtatttgaacaaaatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

139

Amino Acids

15.86

Weight (kDa)

8.4

Isoelectric Point (pI)

45.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12890
fragaria_vesca	FvH4_4g11780 FvH4_4g11780 FvH4_4g11780 FvH4_4g11780
malus_domestica	MD04G1029000.v1.1 MD04G1029200.v1.1 MD04G1029700.v1.1 MD04G1030200.v1.1 MD04G1033400.v1.1 MD04G1033500.v1.1 MD04G1033600.v1.1 MD11G1021900.v1.1 MD11G1022200.v1.1
prunus_persica	Prupe.1G179000_v2.0.a1 Prupe.1G179400_v2.0.a1 Prupe.1G179700_v2.0.a1 Prupe.1G180900_v2.0.a1 Prupe.1G181000_v2.0.a1 Prupe.6G015900_v2.0.a1
pyrus_communis	pycom04g02540 pycom04g02770 pycom04g02790 pycom04g02800 pycom04g02810
rosa_chinensis	RchiOBHm_Chr0c23g0500711 RchiOBHm_Chr0c23g0500721 RchiOBHm_Chr0c23g0500731 RchiOBHm_Chr4g0409041 RchiOBHm_Chr4g0409101 RchiOBHm_Chr4g0409111
rosa_laevigata	RLG00000008592
rosa_multiflora	Rmu_sc0001669.1_g000053 Rmu_sc0004120.1_g000015 Rmu_sc0005470.1_g000002 Rmu_sc0012282.1_g000001 Rmu_sc0016242.1_g000001 Rmu_ssc0000372.1_g000003 Rmu_ssc0000372.1_g000004 Rmu_ssc0000372.1_g000045
rosa_roxburghii	Rroxscaffold_5G00353510
rosa_rugosa	Rorug04G0090100 Rorug04G0090400
rosa_samantha	Rh4BG151800 Rh4BG152000 Rh4CG162300 Rh4CG163000 Rh4CG163100 Rh4CG163500 Rh4DG147100 Rh4DG147300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	232
AccBSI	CCGCTC	1 cut(s)	261
AciI	CCGC	1 cut(s)	261
AcsI	RAATTY	2 cut(s)	129, 381
AdeI	CACNNNGTG	1 cut(s)	153
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	2 cut(s)	232, 296
AgeI	ACCGGT	1 cut(s)	292
AgsI	TTSAA	3 cut(s)	17, 40, 409
AluBI	AGCT	3 cut(s)	28, 64, 86
AluI	AGCT	3 cut(s)	28, 64, 86
AoxI	GGCC	1 cut(s)	287
ApeKI	GCWGC	1 cut(s)	334
ApoI	RAATTY	2 cut(s)	129, 381
AsiGI	ACCGGT	1 cut(s)	292
AspLEI	GCGC	1 cut(s)	221
AspS9I	GGNCC	1 cut(s)	75
AsuHPI	GGTGA	1 cut(s)	326
AvaII	GGWCC	1 cut(s)	75
BaeGI	GKGCMC	1 cut(s)	303
BbvI	GCAGC	1 cut(s)	321
BccI	CCATC	1 cut(s)	226
BisI	GCNGC	1 cut(s)	335
BlsI	GCNGC	1 cut(s)	336
Bme18I	GGWCC	1 cut(s)	75
BmgT120I	GGNCC	1 cut(s)	75
BmsI	GCATC	1 cut(s)	230
BsaWI	WCCGGW	1 cut(s)	292
Bsc4I	CCNNNNNNNGG	2 cut(s)	232, 296
Bse118I	RCCGGY	1 cut(s)	292
BseGI	GGATG	1 cut(s)	221
BseLI	CCNNNNNNNGG	2 cut(s)	232, 296
BseMII	CTCAG	1 cut(s)	218
BseSI	GKGCMC	1 cut(s)	303
BseXI	GCAGC	1 cut(s)	321
Bsh1285I	CGRYCG	1 cut(s)	326
BshFI	GGCC	1 cut(s)	289
BshTI	ACCGGT	1 cut(s)	292
BsiEI	CGRYCG	1 cut(s)	326
BsiSI	CCGG	2 cut(s)	293, 338
BslI	CCNNNNNNNGG	2 cut(s)	232, 296
BsnI	GGCC	1 cut(s)	289
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp143I	GATC	2 cut(s)	213, 323
BspACI	CCGC	1 cut(s)	261
BspANI	GGCC	1 cut(s)	289
BspCNI	CTCAG	1 cut(s)	217
BsrBI	CCGCTC	1 cut(s)	261
BsrFI	RCCGGY	1 cut(s)	292
BssAI	RCCGGY	1 cut(s)	292
BssMI	GATC	2 cut(s)	213, 323
Bst4CI	ACNGT	1 cut(s)	170
BstDEI	CTNAG	1 cut(s)	204
BstF5I	GGATG	1 cut(s)	221
BstHHI	GCGC	1 cut(s)	221
BstKTI	GATC	2 cut(s)	216, 326
BstMBI	GATC	2 cut(s)	213, 323
BstMCI	CGRYCG	1 cut(s)	326
BstMWI	GCNNNNNNNGC	2 cut(s)	163, 340
BstSLI	GKGCMC	1 cut(s)	303
BstV1I	GCAGC	1 cut(s)	321
BsuRI	GGCC	1 cut(s)	289
BtsCI	GGATG	1 cut(s)	221
BtsIMutI	CAGTG	1 cut(s)	175
CfoI	GCGC	1 cut(s)	221
Cfr10I	RCCGGY	1 cut(s)	292
Cfr13I	GGNCC	1 cut(s)	75
Csp6I	GTAC	1 cut(s)	187
CspAI	ACCGGT	1 cut(s)	292
CviAII	CATG	1 cut(s)	307
CviJI	RGCY	7 cut(s)	28, 64, 86, 157, 268, 289, 334
CviKI_1	RGCY	7 cut(s)	28, 64, 86, 157, 268, 289, 334
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	2 cut(s)	215, 325
DpnII	GATC	2 cut(s)	213, 323
DraIII	CACNNNGTG	1 cut(s)	153
Eco47I	GGWCC	1 cut(s)	75
FaeI	CATG	1 cut(s)	310
FaiI	YATR	3 cut(s)	308, 372, 418
FatI	CATG	1 cut(s)	306
FauI	CCCGC	1 cut(s)	254
Fnu4HI	GCNGC	1 cut(s)	335
FokI	GGATG	1 cut(s)	208
Fsp4HI	GCNGC	1 cut(s)	335
GlaI	GCGC	1 cut(s)	220
GluI	GCNGC	1 cut(s)	335
HaeIII	GGCC	1 cut(s)	289
HapII	CCGG	2 cut(s)	293, 338
HhaI	GCGC	1 cut(s)	221
Hin1II	CATG	1 cut(s)	310
Hin6I	GCGC	1 cut(s)	219
HinP1I	GCGC	1 cut(s)	219
HinfI	GANTC	2 cut(s)	161, 176
HpaII	CCGG	2 cut(s)	293, 338
HphI	GGTGA	1 cut(s)	326
Hpy188I	TCNGA	4 cut(s)	35, 207, 323, 328
HpyAV	CCTTC	1 cut(s)	304
HpyCH4III	ACNGT	1 cut(s)	170
HpyCH4V	TGCA	2 cut(s)	6, 147
HpyF10VI	GCNNNNNNNGC	2 cut(s)	163, 340
HpyF3I	CTNAG	1 cut(s)	204
Hsp92II	CATG	1 cut(s)	310
HspAI	GCGC	1 cut(s)	219
Kzo9I	GATC	2 cut(s)	213, 323
LmnI	GCTCC	3 cut(s)	69, 340, 352
LpnPI	CCDG	7 cut(s)	81, 112, 127, 239, 262, 306, 351
Lsp1109I	GCAGC	1 cut(s)	321
LweI	GCATC	1 cut(s)	230
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	2 cut(s)	215, 325
MbiI	CCGCTC	1 cut(s)	261
MboI	GATC	2 cut(s)	213, 323
MboII	GAAGA	1 cut(s)	29
MhlI	GDGCHC	1 cut(s)	303
MluCI	AATT	4 cut(s)	52, 129, 236, 381
MlyI	GAGTC	1 cut(s)	155
MmeI	TCCRAC	2 cut(s)	114, 345
MspI	CCGG	2 cut(s)	293, 338
MwoI	GCNNNNNNNGC	2 cut(s)	163, 340
NdeII	GATC	2 cut(s)	213, 323
NlaIII	CATG	1 cut(s)	310
NmuCI	GTSAC	1 cut(s)	280
PfeI	GAWTC	1 cut(s)	176
PflMI	CCANNNNNTGG	1 cut(s)	232
PinAI	ACCGGT	1 cut(s)	292
PkrI	GCNGC	1 cut(s)	336
Ple19I	CGATCG	1 cut(s)	326
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
PspPI	GGNCC	1 cut(s)	75
PvuI	CGATCG	1 cut(s)	326
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
SatI	GCNGC	1 cut(s)	335
Sau3AI	GATC	2 cut(s)	213, 323
Sau96I	GGNCC	1 cut(s)	75
SchI	GAGTC	1 cut(s)	155
SduI	GDGCHC	1 cut(s)	303
SetI	ASST	4 cut(s)	30, 66, 88, 250
SfaNI	GCATC	1 cut(s)	230
SgrAI	CRCCGGYG	1 cut(s)	292
SinI	GGWCC	1 cut(s)	75
Sse9I	AATT	4 cut(s)	52, 129, 236, 381
SsiI	CCGC	1 cut(s)	261
SspI	AATATT	1 cut(s)	110
TaaI	ACNGT	1 cut(s)	170
TaqI	TCGA	1 cut(s)	24
TasI	AATT	4 cut(s)	52, 129, 236, 381
TfiI	GAWTC	1 cut(s)	176
TscAI	CASTG	1 cut(s)	175
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	1 cut(s)	334
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	1 cut(s)	323
TspRI	CASTG	1 cut(s)	175
Van91I	CCANNNNNTGG	1 cut(s)	232
VpaK11BI	GGWCC	1 cut(s)	75
XapI	RAATTY	2 cut(s)	129, 381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.