MD04G1033500.v1.1

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0001515
Physical Location & Seq
Forward (+)
3780519 .. 3782042
1524 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1033500.v1.1.491

Sequence Viewer

Length: 1524 bp
ATGGGGTTTGAGAGAGAGCATATTGTGATGCTGCCGTTCATGGCGCAAGGCCATATCATACCATTCCTAGCACTTGCAAAGCAAATCCAGGAGTTAACAAACTTCACAATCACCATCGCCACCACCCCTCTCAACATCAAATCCCTCCAATCCACCATTTCCACCGCCTCATCCAATCACAACAACATCCACTTGGCCGAACTTCCCTTCTGCAGCTCAGACCACGACCTGCCCCCCAACACAGAAACCACCGAGAACCTCCCCTTCCCCAAAATCATCAACCTTTTCGCCGCTTCAGTCGCCCTTGAACCTCCATCCCGCCGCCTTATCTCCGATATCATCGAAAAAGAAGGCCGCCCGCCGCTCTGTTTGATCTCCGATGTTTTCTTCGGATGGGCTACTGATCTTGCAAACAGCTTAGGCACTGTCAATGTGAGTTTCACCACAGGCGGGGCTTACGGCTCTGCAGCCTACACATCAATATGGCTCAACCTGCCTCACCGCTCCGCAAGCAACGAATACTTCACCCTCCCCGGCTTCCCGGAACGCTGCAGGTTCCACATCTCTCAGCTGCATCCGTTTCTAAGAGCTGCAGACGGCACAGATTCTTGGTCAAGATTTTTCCAGCCTCAGATTTCGGGTTCTACAAAATCTTTTGGTTGGCTGTGTAATACTGTGGAGGAAATTGAGCCGTTGGGATTGGATATCTTGAGGGATTACTTGAAGCTTCCTGTTTGGTGCATTGGTCCTCTAATTCCTACTGATGCACTCAAAAACTCATCCACATTGGACTTAAAGGTCTCGAGGCAGCGCGCCGGAAAAGAAATGGGCTTTTCGGCCGAGAAATGCCTCGAGTGGCTTGACTTGCAAGGTCCGAATTCTGTAATTTACATCTCATTTGGTTCTCAGAACACAATCAGTGCAACCCAAATGAAGGAATTGGCTGTTGGGTTGGAAGAAAGCGGAAAACCTTTCGTTTGGGTGATAAGGCCTCCGGTGGGGTTTGATCTGAAGGGAGAGTTCAGAGCAGAGTGGCTGCCTCATGGATTTGAGGAGAGAATGAGTAAACGAAAACAGGGGTTGCTAGTGCACAACTGGGCACCCCAGTTGGAGATTTTGTCACACAAATCCATAGGGCTTTTTGTGAGCCATTGTGGGTGGAATTCAGTGATGGAGAGCTTGAGCCAGGGCGTGCCGATTGTTGGGTGGCCGTTGGCGGCGGAGCAGGCCTATAATTCGAAGATGTTGGTGGAGGAGATGGGTGTGAGCGTGGAGCTGACAAGGGGTGTGCAGAGTAATATTGGATGGAAAGAGGTGAAGGAGGTGATTGATTTGGTGATGGATGAGAGTGGGAAGGGAGGGGAGATGAGGAAGAATGCTGGTGAGATTAAGGTGAAGATAAGAAGATCAATTAGAGATGATGATGGTGATCAAGGAAAGGAGAAGGGGTCATCTGTCAAGGCAATGGAGGATTTCGTCGCTGCTCTTTTATCAAAGAAACAAGATTTGTCAAAAATTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

508

Amino Acids

56.27

Weight (kDa)

5.9

Isoelectric Point (pI)

49.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_N PF26168 8 - 253 5.5e-08 Glycosyltransferase, N-terminal domain
UDPGT PF00201 286 - 434 2e-19 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 797
Acc36I ACCTGC 3 cut(s) 237, 501, 543
AccB1I GGYRCC 1 cut(s) 1099
AccBSI CCGCTC 2 cut(s) 364, 504
AccII CGCG 1 cut(s) 813
AcoI YGGCCR 3 cut(s) 195, 837, 1208
AcsI RAATTY 2 cut(s) 877, 1162
AcuI CTGAAG 2 cut(s) 279, 1031
AfiI CCNNNNNNNGG 4 cut(s) 450, 934, 998, 1202
AgsI TTSAA 2 cut(s) 308, 724
AjnI CCWGG 2 cut(s) 87, 1185
AjuI GAANNNNNNNTTGG 2 cut(s) 930, 962
AluBI AGCT 7 cut(s) 216, 417, 571, 590, 727, 1179, 1276
AluI AGCT 7 cut(s) 216, 417, 571, 590, 727, 1179, 1276
Alw21I GWGCWC 1 cut(s) 1092
Alw26I GTCTC 1 cut(s) 805
Alw44I GTGCAC 1 cut(s) 1088
Ama87I CYCGRG 2 cut(s) 802, 851
AoxI GGCC 7 cut(s) 49, 195, 352, 837, 989, 1208, 1227
ApaLI GTGCAC 1 cut(s) 1088
ApeKI GCWGC 9 cut(s) 31, 213, 467, 549, 571, 590, 808, 1036, 1481
ApoI RAATTY 2 cut(s) 877, 1162
AseI ATTAAT 1 cut(s) 1518
AspLEI GCGC 3 cut(s) 46, 813, 815
AspS9I GGNCC 2 cut(s) 746, 872
AsuC2I CCSGG 2 cut(s) 534, 542
AsuII TTCGAA 1 cut(s) 1238
AvaI CYCGRG 2 cut(s) 802, 851
AvaII GGWCC 2 cut(s) 746, 872
BaeGI GKGCMC 2 cut(s) 1092, 1102
BanI GGYRCC 1 cut(s) 1099
Bbv12I GWGCWC 1 cut(s) 1092
BbvI GCAGC 9 cut(s) 18, 225, 479, 536, 558, 577, 820, 1023, 1468
BccI CCATC 8 cut(s) 122, 322, 387, 1165, 1252, 1299, 1333, 1418
BceAI ACGGC 5 cut(s) 19, 475, 613, 676, 1195
BciT130I CCWGG 2 cut(s) 89, 1187
BclI TGATCA 1 cut(s) 1429
BcnI CCSGG 2 cut(s) 534, 542
BcoDI GTCTC 1 cut(s) 805
BfaI CTAG 2 cut(s) 68, 1085
BfmI CTRYAG 4 cut(s) 211, 465, 550, 591
BfuAI ACCTGC 3 cut(s) 237, 501, 543
Bme1390I CCNGG 4 cut(s) 89, 534, 542, 1187
Bme18I GGWCC 2 cut(s) 746, 872
BmeT110I CYCGRG 2 cut(s) 802, 851
BmgT120I GGNCC 2 cut(s) 746, 872
BmiI GGNNCC 2 cut(s) 557, 1101
BmrFI CCNGG 4 cut(s) 89, 534, 542, 1187
BmrI ACTGGG 2 cut(s) 1099, 1105
BmsI GCATC 3 cut(s) 18, 583, 754
BmuI ACTGGG 2 cut(s) 1099, 1105
Bpu10I CCTNAGC 1 cut(s) 418
Bpu14I TTCGAA 1 cut(s) 1238
BpuEI CTTGAG 2 cut(s) 730, 1201
BpuMI CCSGG 2 cut(s) 534, 542
BsaBI GATNNNNATC 1 cut(s) 1428
BsaI GGTCTC 1 cut(s) 805
BsaJI CCNNGG 2 cut(s) 532, 1186
BsaWI WCCGGW 1 cut(s) 994
BsaXI ACNNNNNCTCC 4 cut(s) 1103, 1133, 1433, 1463
Bsc4I CCNNNNNNNGG 4 cut(s) 450, 934, 998, 1202
Bse1I ACTGG 2 cut(s) 1100, 1105
Bse3DI GCAATG 1 cut(s) 1470
Bse8I GATNNNNATC 1 cut(s) 1428
BseBI CCWGG 2 cut(s) 89, 1187
BseDI CCNNGG 2 cut(s) 532, 1186
BseGI GGATG 8 cut(s) 170, 186, 314, 398, 574, 779, 1310, 1348
BseJI GATNNNNATC 1 cut(s) 1428
BseLI CCNNNNNNNGG 4 cut(s) 450, 934, 998, 1202
BseMI GCAATG 1 cut(s) 1470
BseMII CTCAG 4 cut(s) 231, 581, 644, 920
BseNI ACTGG 2 cut(s) 1100, 1105
BsePI GCGCGC 1 cut(s) 811
BseRI GAGGAG 2 cut(s) 1067, 1268
BseSI GKGCMC 2 cut(s) 1092, 1102
BseX3I CGGCCG 1 cut(s) 837
BseXI GCAGC 9 cut(s) 18, 225, 479, 536, 558, 577, 820, 1023, 1468
BsgI GTGCAG 1 cut(s) 1310
Bsh1236I CGCG 1 cut(s) 813
Bsh1285I CGRYCG 1 cut(s) 840
BshFI GGCC 7 cut(s) 51, 197, 354, 839, 991, 1210, 1229
BshNI GGYRCC 1 cut(s) 1099
BsiEI CGRYCG 1 cut(s) 840
BsiHKAI GWGCWC 1 cut(s) 1092
BsiHKCI CYCGRG 2 cut(s) 802, 851
BsiSI CCGG 4 cut(s) 534, 542, 816, 995
BslI CCNNNNNNNGG 4 cut(s) 450, 934, 998, 1202
BsmAI GTCTC 1 cut(s) 805
BsmI GAATGC 1 cut(s) 1381
BsnI GGCC 7 cut(s) 51, 197, 354, 839, 991, 1210, 1229
Bso31I GGTCTC 1 cut(s) 805
BsoBI CYCGRG 2 cut(s) 802, 851
Bsp119I TTCGAA 1 cut(s) 1238
Bsp1286I GDGCHC 2 cut(s) 1092, 1102
Bsp143I GATC 5 cut(s) 372, 403, 1006, 1406, 1429
BspANI GGCC 7 cut(s) 51, 197, 354, 839, 991, 1210, 1229
BspCNI CTCAG 4 cut(s) 230, 580, 643, 919
BspFNI CGCG 1 cut(s) 813
BspLI GGNNCC 2 cut(s) 557, 1101
BspMAI CTGCAG 4 cut(s) 215, 469, 554, 595
BspMI ACCTGC 3 cut(s) 237, 501, 543
BspT104I TTCGAA 1 cut(s) 1238
BspT107I GGYRCC 1 cut(s) 1099
BspTNI GGTCTC 1 cut(s) 805
BsrBI CCGCTC 2 cut(s) 364, 504
BsrDI GCAATG 1 cut(s) 1470
BsrI ACTGG 2 cut(s) 1100, 1105
BssECI CCNNGG 2 cut(s) 532, 1186
BssHII GCGCGC 1 cut(s) 811
BssMI GATC 5 cut(s) 372, 403, 1006, 1406, 1429
Bst2UI CCWGG 2 cut(s) 89, 1187
Bst4CI ACNGT 2 cut(s) 427, 676
BstBI TTCGAA 1 cut(s) 1238
BstC8I GCNNGC 5 cut(s) 359, 511, 813, 1193, 1227
BstDEI CTNAG 6 cut(s) 217, 418, 567, 584, 630, 906
BstF5I GGATG 8 cut(s) 170, 186, 314, 398, 574, 779, 1310, 1348
BstFNI CGCG 1 cut(s) 813
BstHHI GCGC 3 cut(s) 46, 813, 815
BstKTI GATC 5 cut(s) 375, 406, 1009, 1409, 1432
BstMAI GTCTC 1 cut(s) 805
BstMBI GATC 5 cut(s) 372, 403, 1006, 1406, 1429
BstMCI CGRYCG 1 cut(s) 840
BstMWI GCNNNNNNNGC 5 cut(s) 299, 493, 510, 865, 1226
BstNI CCWGG 2 cut(s) 89, 1187
BstSCI CCNGG 4 cut(s) 87, 532, 540, 1185
BstSFI CTRYAG 4 cut(s) 211, 465, 550, 591
BstSLI GKGCMC 2 cut(s) 1092, 1102
BstUI CGCG 1 cut(s) 813
BstV1I GCAGC 9 cut(s) 18, 225, 479, 536, 558, 577, 820, 1023, 1468
BstZI CGGCCG 1 cut(s) 837
BsuRI GGCC 7 cut(s) 51, 197, 354, 839, 991, 1210, 1229
BtgZI GCGATG 1 cut(s) 100
BtsCI GGATG 8 cut(s) 170, 186, 314, 398, 574, 779, 1310, 1348
BtsIMutI CAGTG 3 cut(s) 423, 925, 1173
BveI ACCTGC 3 cut(s) 237, 501, 543
Cac8I GCNNGC 5 cut(s) 359, 511, 813, 1193, 1227
CfoI GCGC 3 cut(s) 46, 813, 815
Cfr13I GGNCC 2 cut(s) 746, 872
CviAII CATG 2 cut(s) 40, 1043
DdeI CTNAG 6 cut(s) 217, 418, 567, 584, 630, 906
DpnI GATC 5 cut(s) 374, 405, 1008, 1408, 1431
DpnII GATC 5 cut(s) 372, 403, 1006, 1406, 1429
DrdI GACNNNNNNGTC 1 cut(s) 797
DseDI GACNNNNNNGTC 1 cut(s) 797
EaeI YGGCCR 3 cut(s) 195, 837, 1208
EagI CGGCCG 1 cut(s) 837
EciI GGCGGA 1 cut(s) 1235
EclXI CGGCCG 1 cut(s) 837
Eco147I AGGCCT 2 cut(s) 991, 1229
Eco31I GGTCTC 1 cut(s) 805
Eco32I GATATC 2 cut(s) 337, 706
Eco47I GGWCC 2 cut(s) 746, 872
Eco52I CGGCCG 1 cut(s) 837
Eco57I CTGAAG 2 cut(s) 279, 1031
Eco88I CYCGRG 2 cut(s) 802, 851
EcoRI GAATTC 2 cut(s) 877, 1162
EcoRII CCWGG 2 cut(s) 87, 1185
EcoRV GATATC 2 cut(s) 337, 706
FaeI CATG 2 cut(s) 43, 1046
FaiI YATR 8 cut(s) 21, 41, 54, 59, 484, 1044, 1133, 1233
FatI CATG 2 cut(s) 39, 1042
FauI CCCGC 3 cut(s) 326, 366, 443
FbaI TGATCA 1 cut(s) 1429
FokI GGATG 8 cut(s) 157, 173, 301, 405, 561, 766, 1317, 1355
FspBI CTAG 2 cut(s) 68, 1085
GlaI GCGC 3 cut(s) 45, 812, 814
HaeIII GGCC 7 cut(s) 51, 197, 354, 839, 991, 1210, 1229
HapII CCGG 4 cut(s) 534, 542, 816, 995
HhaI GCGC 3 cut(s) 46, 813, 815
Hin1II CATG 2 cut(s) 43, 1046
Hin6I GCGC 3 cut(s) 44, 811, 813
HinP1I GCGC 3 cut(s) 44, 811, 813
HincII GTYRAC 1 cut(s) 96
HindII GTYRAC 1 cut(s) 96
HindIII AAGCTT 1 cut(s) 725
HinfI GANTC 1 cut(s) 605
HpaI GTTAAC 1 cut(s) 96
HpaII CCGG 4 cut(s) 534, 542, 816, 995
Hpy166II GTNNAC 3 cut(s) 96, 1067, 1090
Hpy188I TCNGA 9 cut(s) 220, 334, 379, 392, 633, 876, 909, 1011, 1025
Hpy188III TCNNGA 3 cut(s) 615, 709, 802
Hpy8I GTNNAC 3 cut(s) 96, 1067, 1090
Hpy99I CGWCG 1 cut(s) 1481
HpyAV CCTTC 8 cut(s) 217, 274, 344, 928, 1006, 1312, 1348, 1438
HpyCH4III ACNGT 2 cut(s) 427, 676
HpyF10VI GCNNNNNNNGC 5 cut(s) 299, 493, 510, 865, 1226
HpyF3I CTNAG 6 cut(s) 217, 418, 567, 584, 630, 906
Hsp92II CATG 2 cut(s) 43, 1046
HspAI GCGC 3 cut(s) 44, 811, 813
Ksp22I TGATCA 1 cut(s) 1429
KspAI GTTAAC 1 cut(s) 96
Kzo9I GATC 5 cut(s) 372, 403, 1006, 1406, 1429
LmnI GCTCC 3 cut(s) 509, 1222, 1273
Lsp1109I GCAGC 9 cut(s) 18, 225, 479, 536, 558, 577, 820, 1023, 1468
LweI GCATC 3 cut(s) 18, 583, 754
MaeI CTAG 2 cut(s) 68, 1085
MaeIII GTNAC 1 cut(s) 1119
MalI GATC 5 cut(s) 374, 405, 1008, 1408, 1431
MbiI CCGCTC 2 cut(s) 364, 504
MboI GATC 5 cut(s) 372, 403, 1006, 1406, 1429
MboII GAAGA 6 cut(s) 379, 968, 1252, 1384, 1408, 1416
MhlI GDGCHC 2 cut(s) 1092, 1102
MmeI TCCRAC 2 cut(s) 933, 1089
MseI TTAA 4 cut(s) 95, 794, 1389, 1518
MslI CAYNNNNRTG 1 cut(s) 481
MspA1I CMGCKG 1 cut(s) 571
MspI CCGG 4 cut(s) 534, 542, 816, 995
MspR9I CCNGG 4 cut(s) 89, 534, 542, 1187
Mva1269I GAATGC 1 cut(s) 1381
MvaI CCWGG 2 cut(s) 89, 1187
MvnI CGCG 1 cut(s) 813
MwoI GCNNNNNNNGC 5 cut(s) 299, 493, 510, 865, 1226
NciI CCSGG 2 cut(s) 534, 542
NdeII GATC 5 cut(s) 372, 403, 1006, 1406, 1429
NlaIII CATG 2 cut(s) 43, 1046
NlaIV GGNNCC 2 cut(s) 557, 1101
NmeAIII GCCGAG 1 cut(s) 865
NmuCI GTSAC 1 cut(s) 1119
NspV TTCGAA 1 cut(s) 1238
PaeR7I CTCGAG 2 cut(s) 802, 851
PauI GCGCGC 1 cut(s) 811
PceI AGGCCT 2 cut(s) 991, 1229
PctI GAATGC 1 cut(s) 1381
PfeI GAWTC 1 cut(s) 605
PfoI TCCNGGA 2 cut(s) 87, 540
PshBI ATTAAT 1 cut(s) 1518
Psp6I CCWGG 2 cut(s) 87, 1185
PspGI CCWGG 2 cut(s) 87, 1185
PspN4I GGNNCC 2 cut(s) 557, 1101
PspPI GGNCC 2 cut(s) 746, 872
PspXI VCTCGAGB 1 cut(s) 851
PstI CTGCAG 4 cut(s) 215, 469, 554, 595
PteI GCGCGC 1 cut(s) 811
PvuII CAGCTG 1 cut(s) 571
RseI CAYNNNNRTG 1 cut(s) 481
SaqAI TTAA 4 cut(s) 95, 794, 1389, 1518
Sau3AI GATC 5 cut(s) 372, 403, 1006, 1406, 1429
Sau96I GGNCC 2 cut(s) 746, 872
ScrFI CCNGG 4 cut(s) 89, 534, 542, 1187
SduI GDGCHC 2 cut(s) 1092, 1102
SfaNI GCATC 3 cut(s) 18, 583, 754
SfcI CTRYAG 4 cut(s) 211, 465, 550, 591
Sfr274I CTCGAG 2 cut(s) 802, 851
SfuI TTCGAA 1 cut(s) 1238
SinI GGWCC 2 cut(s) 746, 872
SlaI CTCGAG 2 cut(s) 802, 851
SmiMI CAYNNNNRTG 1 cut(s) 481
SmlI CTYRAG 4 cut(s) 709, 802, 851, 1180
SmoI CTYRAG 4 cut(s) 709, 802, 851, 1180
SseBI AGGCCT 2 cut(s) 991, 1229
SspI AATATT 1 cut(s) 1300
SspMI CTAG 2 cut(s) 68, 1085
StuI AGGCCT 2 cut(s) 991, 1229
StyD4I CCNGG 4 cut(s) 87, 532, 540, 1185
TaaI ACNGT 2 cut(s) 427, 676
TaqI TCGA 4 cut(s) 342, 803, 852, 1238
TauI GCSGC 5 cut(s) 293, 324, 357, 364, 1220
TfiI GAWTC 1 cut(s) 605
Tru1I TTAA 4 cut(s) 95, 794, 1389, 1518
Tru9I TTAA 4 cut(s) 95, 794, 1389, 1518
TscAI CASTG 3 cut(s) 430, 925, 1173
TseFI GTSAC 1 cut(s) 1119
TseI GCWGC 9 cut(s) 31, 213, 467, 549, 571, 590, 808, 1036, 1481
Tsp45I GTSAC 1 cut(s) 1119
TspDTI ATGAA 2 cut(s) 28, 947
TspGWI ACGGA 1 cut(s) 567
TspRI CASTG 3 cut(s) 430, 925, 1173
VneI GTGCAC 1 cut(s) 1088
VpaK11BI GGWCC 2 cut(s) 746, 872
VspI ATTAAT 1 cut(s) 1518
XapI RAATTY 2 cut(s) 877, 1162
XhoI CTCGAG 2 cut(s) 802, 851
XspI CTAG 2 cut(s) 68, 1085
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.