Rmu_ssc0000372.1_g000004

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000372.1
OG0001515
Physical Location & Seq
Forward (+)
13783 .. 17489
3707 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000372.1_g000004.1.cds

Sequence Viewer

Length: 1668 bp
atgggttttgataaggaacacatagtgatgctaccattcttggctcaaggccatctgattccattcctagccctagccaagcaaatccagcacagaacagggttcaccatcaccatcgccaccaccgccctcaacgcccattaccttcggtctgctcaacccaacaccaacatccacttggccgagcttcccttccgcagcgaagactatggcctcccgcccaacacagagaacacagagaacatacctctcaacgtagtcggagacctcttcactgcatcgcaacatctcgaagctccgactcgccgccttgtctcggacatcaccgaaaaagaaggcaagccgccgctttgcttaatctccgacgtgttttttgggtgggctgtgaatgtagcgaaaagcttcggcaccgtcaacgtcgctttcaccaccggtggggcttacggcacggcggcgtacgtgtccatctggcaacatctcccgcatcgtagtgtgtcttcagacgacgaggagttccaccttccgggcttcccggaacggtgtcgtttgacaccgtctcacttgcatccgtttttgagagccgccgacggtacggattcttggtcgagatatttccagctgcagatctcgctctcgatgaagtctttcggttgcatatgcaacaccattgaggaaatcgagccgttcggattggaagtgttgcgaaattaccttatggttcctgtttggtcggtcttggcttccaatatttccagccaaaaatattccgggaagaaatccggaatttcggctgagaaatgtattgagtggctcgactcgcacgcttccgattcggtggtgtacatctctttcggttcccagaacacgatcagtgcctcccagatgatagaattggccaaaggattggaaaaaagcgggaagccttttgtctgggtcataaggccgccggtgggccacgacttgaagggcgagttccgaccggagtggctgccggagcgtttcgaggaacgaatgagggagacgaagcaggggttattggtgcacaattgggcctcgcaattggagattctgtcgcacgcggcgacgcgagcgtttgtgagtcactgcgggtggaactcggtggtggagagcttgagcagaggggtgccgatcatcgggtggccgctggcggcggagcaggcgtataactcaaagatgttggtggaggagatgggcgtgagtgtggagctgacgaggggtgtgaagagtaatgtggaggcggaggaggtgaggagagtgattgagttggtggtggacgagagtggggaaggtggtgagatgaggagaagagctggtgagattatggagaagataagaggagctgtaggggaggatggtgaagcaaagggggagaaggaagaggatccaaaattcagtaacactgtattttcaattaggatgtaccttggagggggaaaaggatcaaggctagctacctctgccgatatcgagttccgttgcttcgtcggatgtggtatctacggaagtggtgatggttgttgtgaaggtggaagtggtggtggatacaaccgtggaagtggaggtggaggcagcggaggcgatggctacagaggtggtggctgggaccatggatctgctggcgggagctggagatctgttgctttctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

555

Amino Acids

60.65

Weight (kDa)

5.77

Isoelectric Point (pI)

47.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 407, 1144
AccII CGCG 2 cut(s) 1079, 1087
AccIII TCCGGA 1 cut(s) 779
AclWI GGATC 4 cut(s) 1397, 1410, 1468, 1639
AcoI YGGCCR 3 cut(s) 180, 894, 1160
AcsI RAATTY 2 cut(s) 783, 1409
AcuI CTGAAG 1 cut(s) 483
AdeI CACNNNGTG 1 cut(s) 25
AfaI GTAC 4 cut(s) 458, 592, 842, 1442
AfiI CCNNNNNNNGG 6 cut(s) 316, 435, 523, 950, 1154, 1450
AflIII ACRYGT 2 cut(s) 366, 459
AgeI ACCGGT 1 cut(s) 431
AgsI TTSAA 2 cut(s) 964, 1431
AjiI CACGTC 1 cut(s) 367
Alw21I GWGCWC 1 cut(s) 1044
Alw26I GTCTC 4 cut(s) 258, 319, 561, 1013
Alw44I GTGCAC 1 cut(s) 1040
AlwI GGATC 4 cut(s) 1397, 1410, 1468, 1639
Aor13HI TCCGGA 1 cut(s) 779
AoxI GGCC 8 cut(s) 49, 180, 211, 894, 941, 952, 1050, 1160
ApaLI GTGCAC 1 cut(s) 1040
ApeKI GCWGC 4 cut(s) 198, 619, 988, 1590
ApoI RAATTY 2 cut(s) 783, 1409
ArsI GACNNNNNNTTYG 2 cut(s) 356, 388
AsiGI ACCGGT 1 cut(s) 431
Asp700I GAANNNNTTC 2 cut(s) 401, 644
AspS9I GGNCC 3 cut(s) 952, 1050, 1624
AsuC2I CCSGG 3 cut(s) 525, 533, 769
AsuHPI GGTGA 9 cut(s) 97, 103, 316, 418, 1279, 1325, 1346, 1388, 1541
AsuNHI GCTAGC 1 cut(s) 1468
AvaII GGWCC 1 cut(s) 1624
BaeGI GKGCMC 1 cut(s) 1044
BaeI ACNNNNGTAYC 2 cut(s) 1555, 1588
BalI TGGCCA 1 cut(s) 896
BamHI GGATCC 1 cut(s) 1402
BanI GGYRCC 2 cut(s) 407, 1144
BarI GAAGNNNNNNTAC 2 cut(s) 481, 513
BbsI GAAGAC 2 cut(s) 210, 489
Bbv12I GWGCWC 1 cut(s) 1044
BbvI GCAGC 4 cut(s) 210, 606, 975, 1602
BccI CCATC 8 cut(s) 60, 116, 122, 473, 1204, 1367, 1526, 1595
BceAI ACGGC 3 cut(s) 460, 465, 667
BciVI GTATCC 1 cut(s) 1556
BcnI CCSGG 3 cut(s) 525, 533, 769
BcoDI GTCTC 4 cut(s) 258, 319, 561, 1013
BfaI CTAG 4 cut(s) 68, 74, 1469, 1666
BfmI CTRYAG 3 cut(s) 620, 1362, 1606
BfuI GTATCC 1 cut(s) 1556
BglII AGATCT 2 cut(s) 624, 1652
Bme1390I CCNGG 3 cut(s) 525, 533, 769
Bme18I GGWCC 1 cut(s) 1624
BmgBI CACGTC 1 cut(s) 367
BmgT120I GGNCC 3 cut(s) 952, 1050, 1624
BmiI GGNNCC 6 cut(s) 409, 720, 856, 1146, 1404, 1625
BmrFI CCNGG 3 cut(s) 525, 533, 769
BmsI GCATC 4 cut(s) 18, 287, 493, 574
BmtI GCTAGC 1 cut(s) 1472
BpiI GAAGAC 2 cut(s) 210, 489
BpuEI CTTGAG 2 cut(s) 30, 1153
BpuMI CCSGG 3 cut(s) 525, 533, 769
BsaAI YACGTR 1 cut(s) 460
BsaI GGTCTC 1 cut(s) 258
BsaJI CCNNGG 3 cut(s) 1444, 1570, 1627
BsaWI WCCGGW 3 cut(s) 431, 779, 979
BsaXI ACNNNNNCTCC 4 cut(s) 1055, 1085, 1166, 1196
Bsc4I CCNNNNNNNGG 6 cut(s) 316, 435, 523, 950, 1154, 1450
Bse118I RCCGGY 2 cut(s) 431, 946
BseAI TCCGGA 1 cut(s) 779
BseDI CCNNGG 3 cut(s) 1444, 1570, 1627
BseGI GGATG 5 cut(s) 171, 565, 1378, 1443, 1514
BseLI CCNNNNNNNGG 6 cut(s) 316, 435, 523, 950, 1154, 1450
BseMII CTCAG 1 cut(s) 783
BseRI GAGGAG 6 cut(s) 524, 1220, 1277, 1285, 1336, 1371
BseSI GKGCMC 1 cut(s) 1044
BseXI GCAGC 4 cut(s) 210, 606, 975, 1602
BseYI CCCAGC 1 cut(s) 1620
Bsh1236I CGCG 2 cut(s) 1079, 1087
Bsh1285I CGRYCG 1 cut(s) 980
BshFI GGCC 8 cut(s) 51, 182, 213, 896, 943, 954, 1052, 1162
BshNI GGYRCC 2 cut(s) 407, 1144
BshTI ACCGGT 1 cut(s) 431
BsiEI CGRYCG 1 cut(s) 980
BsiHKAI GWGCWC 1 cut(s) 1044
BsiSI CCGG 8 cut(s) 432, 524, 533, 768, 780, 947, 980, 992
BsiWI CGTACG 1 cut(s) 456
BslFI GGGAC 1 cut(s) 1637
BslI CCNNNNNNNGG 6 cut(s) 316, 435, 523, 950, 1154, 1450
BsmAI GTCTC 4 cut(s) 258, 319, 561, 1013
BsmBI CGTCTC 2 cut(s) 561, 1013
BsmFI GGGAC 1 cut(s) 1637
BsnI GGCC 8 cut(s) 51, 182, 213, 896, 943, 954, 1052, 1162
Bso31I GGTCTC 1 cut(s) 258
Bsp1286I GDGCHC 1 cut(s) 1044
Bsp13I TCCGGA 1 cut(s) 779
Bsp1407I TGTACA 1 cut(s) 840
Bsp143I GATC 7 cut(s) 624, 867, 1149, 1402, 1460, 1631, 1652
Bsp19I CCATGG 1 cut(s) 1627
BspANI GGCC 8 cut(s) 51, 182, 213, 896, 943, 954, 1052, 1162
BspCNI CTCAG 1 cut(s) 784
BspEI TCCGGA 1 cut(s) 779
BspFNI CGCG 2 cut(s) 1079, 1087
BspLI GGNNCC 6 cut(s) 409, 720, 856, 1146, 1404, 1625
BspMAI CTGCAG 1 cut(s) 624
BspOI GCTAGC 1 cut(s) 1472
BspPI GGATC 4 cut(s) 1397, 1410, 1468, 1639
BspQI GCTCTTC 1 cut(s) 1321
BspT107I GGYRCC 2 cut(s) 407, 1144
BspTNI GGTCTC 1 cut(s) 258
BsrFI RCCGGY 2 cut(s) 431, 946
BsrGI TGTACA 1 cut(s) 840
BssAI RCCGGY 2 cut(s) 431, 946
BssECI CCNNGG 3 cut(s) 1444, 1570, 1627
BssMI GATC 7 cut(s) 624, 867, 1149, 1402, 1460, 1631, 1652
BssT1I CCWWGG 2 cut(s) 1444, 1627
Bst4CI ACNGT 6 cut(s) 412, 540, 555, 590, 1423, 1571
Bst6I CTCTTC 4 cut(s) 275, 1238, 1321, 1392
BstAUI TGTACA 1 cut(s) 840
BstBAI YACGTR 1 cut(s) 460
BstC8I GCNNGC 8 cut(s) 341, 822, 1077, 1089, 1167, 1179, 1470, 1639
BstDEI CTNAG 1 cut(s) 792
BstDSI CCRYGG 2 cut(s) 1570, 1627
BstF5I GGATG 5 cut(s) 171, 565, 1378, 1443, 1514
BstFNI CGCG 2 cut(s) 1079, 1087
BstKTI GATC 7 cut(s) 627, 870, 1152, 1405, 1463, 1634, 1655
BstMAI GTCTC 4 cut(s) 258, 319, 561, 1013
BstMBI GATC 7 cut(s) 624, 867, 1149, 1402, 1460, 1631, 1652
BstMCI CGRYCG 1 cut(s) 980
BstSCI CCNGG 3 cut(s) 523, 531, 767
BstSFI CTRYAG 3 cut(s) 620, 1362, 1606
BstSLI GKGCMC 1 cut(s) 1044
BstUI CGCG 2 cut(s) 1079, 1087
BstV1I GCAGC 4 cut(s) 210, 606, 975, 1602
BstV2I GAAGAC 2 cut(s) 210, 489
BstX2I RGATCY 4 cut(s) 624, 1402, 1631, 1652
BstXI CCANNNNNNTGG 1 cut(s) 904
BstYI RGATCY 4 cut(s) 624, 1402, 1631, 1652
BsuI GTATCC 1 cut(s) 1556
BsuRI GGCC 8 cut(s) 51, 182, 213, 896, 943, 954, 1052, 1162
BtgI CCRYGG 2 cut(s) 1570, 1627
BtgZI GCGATG 3 cut(s) 100, 264, 1614
BtrI CACGTC 1 cut(s) 367
BtsCI GGATG 5 cut(s) 171, 565, 1378, 1443, 1514
BtsI GCAGTG 2 cut(s) 273, 1102
BtsIMutI CAGTG 4 cut(s) 273, 877, 1102, 1419
Cac8I GCNNGC 8 cut(s) 341, 822, 1077, 1089, 1167, 1179, 1470, 1639
Cfr10I RCCGGY 2 cut(s) 431, 946
Cfr13I GGNCC 3 cut(s) 952, 1050, 1624
CseI GACGC 1 cut(s) 1093
Csp6I GTAC 4 cut(s) 457, 591, 841, 1441
CspAI ACCGGT 1 cut(s) 431
CviAII CATG 1 cut(s) 1628
CviQI GTAC 4 cut(s) 457, 591, 841, 1441
DdeI CTNAG 1 cut(s) 792
DpnI GATC 7 cut(s) 626, 869, 1151, 1404, 1462, 1633, 1654
DpnII GATC 7 cut(s) 624, 867, 1149, 1402, 1460, 1631, 1652
DraIII CACNNNGTG 1 cut(s) 25
EaeI YGGCCR 3 cut(s) 180, 894, 1160
Eam1104I CTCTTC 4 cut(s) 275, 1238, 1321, 1392
EarI CTCTTC 4 cut(s) 275, 1238, 1321, 1392
EciI GGCGGA 2 cut(s) 1187, 1274
Eco130I CCWWGG 2 cut(s) 1444, 1627
Eco31I GGTCTC 1 cut(s) 258
Eco32I GATATC 1 cut(s) 1486
Eco47I GGWCC 1 cut(s) 1624
Eco57I CTGAAG 1 cut(s) 483
EcoRV GATATC 1 cut(s) 1486
EcoT14I CCWWGG 2 cut(s) 1444, 1627
ErhI CCWWGG 2 cut(s) 1444, 1627
Esp3I CGTCTC 2 cut(s) 561, 1013
FaeI CATG 1 cut(s) 1631
FaqI GGGAC 1 cut(s) 1637
FatI CATG 1 cut(s) 1627
FauI CCCGC 5 cut(s) 225, 489, 908, 1100, 1634
FauNDI CATATG 1 cut(s) 656
FokI GGATG 5 cut(s) 158, 552, 1385, 1450, 1521
FspBI CTAG 4 cut(s) 68, 74, 1469, 1666
GsaI CCCAGC 1 cut(s) 1624
HaeIII GGCC 8 cut(s) 51, 182, 213, 896, 943, 954, 1052, 1162
HapII CCGG 8 cut(s) 432, 524, 533, 768, 780, 947, 980, 992
HgaI GACGC 1 cut(s) 1093
Hin1II CATG 1 cut(s) 1631
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HindIII AAGCTT 1 cut(s) 400
HinfI GANTC 7 cut(s) 58, 301, 596, 815, 830, 1066, 1099
HpaII CCGG 8 cut(s) 432, 524, 533, 768, 780, 947, 980, 992
HphI GGTGA 9 cut(s) 97, 103, 316, 418, 1279, 1325, 1346, 1388, 1541
Hpy166II GTNNAC 5 cut(s) 105, 415, 841, 1042, 1294
Hpy188III TCNNGA 4 cut(s) 290, 606, 634, 780
Hpy8I GTNNAC 5 cut(s) 105, 415, 841, 1042, 1294
Hpy99I CGWCG 6 cut(s) 368, 422, 509, 590, 1087, 1508
HpyAV CCTTC 8 cut(s) 155, 202, 329, 530, 958, 1301, 1387, 1538
HpyCH4III ACNGT 6 cut(s) 412, 540, 555, 590, 1423, 1571
HpyCH4IV ACGT 4 cut(s) 255, 366, 417, 459
HpyCH4V TGCA 6 cut(s) 278, 565, 622, 654, 660, 1042
HpyF3I CTNAG 1 cut(s) 792
HpySE526I ACGT 4 cut(s) 255, 366, 417, 459
Hsp92II CATG 1 cut(s) 1631
Kpn2I TCCGGA 1 cut(s) 779
Kzo9I GATC 7 cut(s) 624, 867, 1149, 1402, 1460, 1631, 1652
LguI GCTCTTC 1 cut(s) 1321
LmnI GCTCC 6 cut(s) 301, 994, 1174, 1225, 1358, 1644
Lsp1109I GCAGC 4 cut(s) 210, 606, 975, 1602
LweI GCATC 4 cut(s) 18, 287, 493, 574
MaeI CTAG 4 cut(s) 68, 74, 1469, 1666
MaeII ACGT 4 cut(s) 255, 366, 417, 459
MaeIII GTNAC 2 cut(s) 1100, 1415
MalI GATC 7 cut(s) 626, 869, 1151, 1404, 1462, 1633, 1654
MboI GATC 7 cut(s) 624, 867, 1149, 1402, 1460, 1631, 1652
MboII GAAGA 8 cut(s) 215, 262, 489, 784, 1255, 1338, 1360, 1409
MfeI CAATTG 2 cut(s) 1045, 1058
MflI RGATCY 4 cut(s) 624, 1402, 1631, 1652
MhlI GDGCHC 1 cut(s) 1044
MlsI TGGCCA 1 cut(s) 896
MluCI AATT 7 cut(s) 706, 783, 890, 1045, 1058, 1409, 1431
MluNI TGGCCA 1 cut(s) 896
MlyI GAGTC 3 cut(s) 295, 809, 1108
MmeI TCCRAC 5 cut(s) 241, 323, 387, 1000, 1486
Mox20I TGGCCA 1 cut(s) 896
MroI TCCGGA 1 cut(s) 779
MroXI GAANNNNTTC 2 cut(s) 401, 644
MscI TGGCCA 1 cut(s) 896
MseI TTAA 1 cut(s) 356
MslI CAYNNNNRTG 2 cut(s) 26, 489
Msp20I TGGCCA 1 cut(s) 896
MspA1I CMGCKG 3 cut(s) 619, 1165, 1593
MspI CCGG 8 cut(s) 432, 524, 533, 768, 780, 947, 980, 992
MspR9I CCNGG 3 cut(s) 525, 533, 769
MunI CAATTG 2 cut(s) 1045, 1058
MvnI CGCG 2 cut(s) 1079, 1087
NciI CCSGG 3 cut(s) 525, 533, 769
NcoI CCATGG 1 cut(s) 1627
NdeI CATATG 1 cut(s) 656
NdeII GATC 7 cut(s) 624, 867, 1149, 1402, 1460, 1631, 1652
NheI GCTAGC 1 cut(s) 1468
NlaIII CATG 1 cut(s) 1631
NlaIV GGNNCC 6 cut(s) 409, 720, 856, 1146, 1404, 1625
NmeAIII GCCGAG 1 cut(s) 208
NmuCI GTSAC 1 cut(s) 1100
PciSI GCTCTTC 1 cut(s) 1321
PcsI WCGNNNNNNNCGW 1 cut(s) 1079
PdmI GAANNNNTTC 2 cut(s) 401, 644
PfeI GAWTC 4 cut(s) 58, 596, 830, 1066
Pfl23II CGTACG 1 cut(s) 456
PflFI GACNNNGTC 1 cut(s) 553
PfoI TCCNGGA 2 cut(s) 531, 767
PinAI ACCGGT 1 cut(s) 431
PleI GAGTC 3 cut(s) 295, 809, 1107
PpsI GAGTC 3 cut(s) 295, 809, 1107
Ppu21I YACGTR 1 cut(s) 460
PspFI CCCAGC 1 cut(s) 1620
PspLI CGTACG 1 cut(s) 456
PspN4I GGNNCC 6 cut(s) 409, 720, 856, 1146, 1404, 1625
PspPI GGNCC 3 cut(s) 952, 1050, 1624
PstI CTGCAG 1 cut(s) 624
PsuI RGATCY 4 cut(s) 624, 1402, 1631, 1652
PsyI GACNNNGTC 1 cut(s) 553
PvuII CAGCTG 1 cut(s) 619
RsaI GTAC 4 cut(s) 458, 592, 842, 1442
RsaNI GTAC 4 cut(s) 457, 591, 841, 1441
RseI CAYNNNNRTG 2 cut(s) 26, 489
SapI GCTCTTC 1 cut(s) 1321
SaqAI TTAA 1 cut(s) 356
Sau3AI GATC 7 cut(s) 624, 867, 1149, 1402, 1460, 1631, 1652
Sau96I GGNCC 3 cut(s) 952, 1050, 1624
SchI GAGTC 3 cut(s) 295, 809, 1108
ScrFI CCNGG 3 cut(s) 525, 533, 769
SduI GDGCHC 1 cut(s) 1044
SfaNI GCATC 4 cut(s) 18, 287, 493, 574
SfcI CTRYAG 3 cut(s) 620, 1362, 1606
SgrAI CRCCGGYG 2 cut(s) 431, 946
SinI GGWCC 1 cut(s) 1624
SmiMI CAYNNNNRTG 2 cut(s) 26, 489
SmlI CTYRAG 2 cut(s) 45, 1132
SmoI CTYRAG 2 cut(s) 45, 1132
Sse9I AATT 7 cut(s) 706, 783, 890, 1045, 1058, 1409, 1431
SspI AATATT 2 cut(s) 748, 764
SspMI CTAG 4 cut(s) 68, 74, 1469, 1666
StyD4I CCNGG 3 cut(s) 523, 531, 767
StyI CCWWGG 2 cut(s) 1444, 1627
TaaI ACNGT 6 cut(s) 412, 540, 555, 590, 1423, 1571
TaiI ACGT 4 cut(s) 258, 369, 420, 462
TaqI TCGA 7 cut(s) 291, 605, 635, 678, 813, 1002, 1488
TaqII GACCGA 2 cut(s) 138, 721
TasI AATT 7 cut(s) 706, 783, 890, 1045, 1058, 1409, 1431
TatI WGTACW 1 cut(s) 840
TauI GCSGC 9 cut(s) 309, 346, 349, 455, 584, 946, 1082, 1165, 1172
TfiI GAWTC 4 cut(s) 58, 596, 830, 1066
Tru1I TTAA 1 cut(s) 356
Tru9I TTAA 1 cut(s) 356
TscAI CASTG 4 cut(s) 280, 877, 1109, 1426
TseFI GTSAC 1 cut(s) 1100
TseI GCWGC 4 cut(s) 198, 619, 988, 1590
Tsp45I GTSAC 1 cut(s) 1100
TspDTI ATGAA 1 cut(s) 653
TspGWI ACGGA 4 cut(s) 558, 608, 1484, 1536
TspRI CASTG 4 cut(s) 280, 877, 1109, 1426
Tth111I GACNNNGTC 1 cut(s) 553
VneI GTGCAC 1 cut(s) 1040
VpaK11BI GGWCC 1 cut(s) 1624
XapI RAATTY 2 cut(s) 783, 1409
XcmI CCANNNNNNNNNTGG 2 cut(s) 175, 1634
XmnI GAANNNNTTC 2 cut(s) 401, 644
XspI CTAG 4 cut(s) 68, 74, 1469, 1666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.