gamma-irradiation and mitomycin c induced
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| HATPase_c_3 | PF13589 | 142 - 267 | 8.9e-09 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1157 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 826 |
| Acc16I | TGCGCA | 2 cut(s) | 1686, 4727 |
| Acc36I | ACCTGC | 5 cut(s) | 1157, 2314, 4347, 4471, 4719 |
| AccB1I | GGYRCC | 2 cut(s) | 638, 2519 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 677 |
| AccI | GTMKAC | 2 cut(s) | 1616, 3883 |
| AccII | CGCG | 1 cut(s) | 446 |
| AciI | CCGC | 4 cut(s) | 240, 446, 1980, 4494 |
| AclI | AACGTT | 1 cut(s) | 2882 |
| AclWI | GGATC | 6 cut(s) | 456, 1779, 1792, 2854, 4298, 4346 |
| AcoI | YGGCCR | 3 cut(s) | 1393, 3677, 3708 |
| AcsI | RAATTY | 5 cut(s) | 995, 1335, 2055, 2989, 4771 |
| AcuI | CTGAAG | 3 cut(s) | 718, 4230, 4386 |
| AfaI | GTAC | 7 cut(s) | 802, 2696, 3298, 3307, 3770, 4010, 4600 |
| AfeI | AGCGCT | 2 cut(s) | 2432, 4074 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 130, 677, 934, 1107, 2454, 3337, 3650, 4361 |
| AflII | CTTAAG | 2 cut(s) | 665, 3167 |
| AgeI | ACCGGT | 1 cut(s) | 635 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 880, 4543 |
| AhlI | ACTAGT | 1 cut(s) | 98 |
| AjiI | CACGTC | 2 cut(s) | 2319, 4098 |
| AjnI | CCWGG | 3 cut(s) | 1311, 2755, 3024 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 14, 46, 824, 856, 2229, 2261 |
| AleI | CACNNNNGTG | 1 cut(s) | 101 |
| Alw21I | GWGCWC | 2 cut(s) | 499, 3916 |
| Alw44I | GTGCAC | 1 cut(s) | 3912 |
| AlwI | GGATC | 6 cut(s) | 456, 1779, 1792, 2854, 4298, 4346 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 741 |
| Ama87I | CYCGRG | 3 cut(s) | 2942, 3542, 4429 |
| Aor51HI | AGCGCT | 2 cut(s) | 2432, 4074 |
| AoxI | GGCC | 9 cut(s) | 479, 609, 1121, 1393, 1800, 2003, 2945, 3677, 3708 |
| ApaLI | GTGCAC | 1 cut(s) | 3912 |
| ApoI | RAATTY | 5 cut(s) | 995, 1335, 2055, 2989, 4771 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 181, 213 |
| AseI | ATTAAT | 2 cut(s) | 2810, 3150 |
| AsiGI | ACCGGT | 1 cut(s) | 635 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 839 |
| AspLEI | GCGC | 5 cut(s) | 1687, 2433, 3834, 4075, 4728 |
| AsuC2I | CCSGG | 4 cut(s) | 553, 2943, 2944, 4362 |
| AsuHPI | GGTGA | 4 cut(s) | 175, 539, 4228, 4747 |
| AsuII | TTCGAA | 1 cut(s) | 2060 |
| AsuNHI | GCTAGC | 2 cut(s) | 2750, 4217 |
| AvaI | CYCGRG | 3 cut(s) | 2942, 3542, 4429 |
| AvaII | GGWCC | 8 cut(s) | 79, 698, 925, 2344, 2487, 3066, 3465, 4175 |
| BaeGI | GKGCMC | 1 cut(s) | 3916 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 682, 715 |
| BalI | TGGCCA | 1 cut(s) | 3710 |
| BamHI | GGATCC | 1 cut(s) | 1784 |
| BanI | GGYRCC | 2 cut(s) | 638, 2519 |
| BanII | GRGCYC | 1 cut(s) | 499 |
| BbsI | GAAGAC | 3 cut(s) | 804, 911, 3111 |
| Bbv12I | GWGCWC | 2 cut(s) | 499, 3916 |
| BceAI | ACGGC | 1 cut(s) | 1380 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1990, 2024, 2292, 2326 |
| BciT130I | CCWGG | 3 cut(s) | 1313, 2757, 3026 |
| BciVI | GTATCC | 4 cut(s) | 385, 683, 1978, 3352 |
| BcnI | CCSGG | 4 cut(s) | 553, 2943, 2944, 4362 |
| BcuI | ACTAGT | 1 cut(s) | 98 |
| BfaI | CTAG | 9 cut(s) | 99, 1760, 2751, 3363, 3747, 4079, 4218, 4272, 4550 |
| BfmI | CTRYAG | 3 cut(s) | 2127, 3548, 3984 |
| BfoI | RGCGCY | 3 cut(s) | 2434, 3835, 4076 |
| BfrI | CTTAAG | 2 cut(s) | 665, 3167 |
| BfuAI | ACCTGC | 5 cut(s) | 1157, 2314, 4347, 4471, 4719 |
| BfuI | GTATCC | 4 cut(s) | 385, 683, 1978, 3352 |
| BglII | AGATCT | 3 cut(s) | 135, 623, 1011 |
| BlpI | GCTNAGC | 2 cut(s) | 3867, 4103 |
| Bme1390I | CCNGG | 7 cut(s) | 553, 1313, 2757, 2943, 2944, 3026, 4362 |
| Bme18I | GGWCC | 8 cut(s) | 79, 698, 925, 2344, 2487, 3066, 3465, 4175 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 880, 4543 |
| BmeT110I | CYCGRG | 3 cut(s) | 2942, 3542, 4429 |
| BmgBI | CACGTC | 2 cut(s) | 2319, 4098 |
| BmrFI | CCNGG | 7 cut(s) | 553, 1313, 2757, 2943, 2944, 3026, 4362 |
| BmrI | ACTGGG | 1 cut(s) | 1116 |
| BmtI | GCTAGC | 2 cut(s) | 2754, 4221 |
| BmuI | ACTGGG | 1 cut(s) | 1116 |
| BpiI | GAAGAC | 3 cut(s) | 804, 911, 3111 |
| BpmI | CTGGAG | 5 cut(s) | 275, 1007, 1712, 2645, 3047 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 3867, 4103 |
| Bpu14I | TTCGAA | 1 cut(s) | 2060 |
| BpuEI | CTTGAG | 4 cut(s) | 1019, 1251, 1271, 2804 |
| BpuMI | CCSGG | 4 cut(s) | 553, 2943, 2944, 4362 |
| Bsa29I | ATCGAT | 2 cut(s) | 2010, 2049 |
| BsaAI | YACGTR | 1 cut(s) | 2894 |
| BsaBI | GATNNNNATC | 3 cut(s) | 3093, 3116, 4191 |
| BsaI | GGTCTC | 3 cut(s) | 2780, 4038, 4484 |
| BsaWI | WCCGGW | 4 cut(s) | 130, 388, 635, 4603 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1181, 1211, 3565, 3595, 4527, 4557 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 130, 677, 934, 1107, 2454, 3337, 3650, 4361 |
| Bse118I | RCCGGY | 1 cut(s) | 635 |
| Bse1I | ACTGG | 7 cut(s) | 905, 1024, 1060, 1111, 2070, 3113, 4665 |
| Bse3DI | GCAATG | 2 cut(s) | 2647, 2904 |
| Bse8I | GATNNNNATC | 3 cut(s) | 3093, 3116, 4191 |
| BseBI | CCWGG | 3 cut(s) | 1313, 2757, 3026 |
| BseCI | ATCGAT | 2 cut(s) | 2010, 2049 |
| BseJI | GATNNNNATC | 3 cut(s) | 3093, 3116, 4191 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 130, 677, 934, 1107, 2454, 3337, 3650, 4361 |
| BseMI | GCAATG | 2 cut(s) | 2647, 2904 |
| BseNI | ACTGG | 7 cut(s) | 905, 1024, 1060, 1111, 2070, 3113, 4665 |
| BseRI | GAGGAG | 7 cut(s) | 950, 1911, 2265, 3614, 4421, 4709, 4724 |
| BseSI | GKGCMC | 1 cut(s) | 3916 |
| BseYI | CCCAGC | 2 cut(s) | 1907, 2264 |
| BsgI | GTGCAG | 1 cut(s) | 1048 |
| Bsh1236I | CGCG | 1 cut(s) | 446 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2014 |
| BshFI | GGCC | 9 cut(s) | 481, 611, 1123, 1395, 1802, 2005, 2947, 3679, 3710 |
| BshNI | GGYRCC | 2 cut(s) | 638, 2519 |
| BshTI | ACCGGT | 1 cut(s) | 635 |
| BshVI | ATCGAT | 2 cut(s) | 2010, 2049 |
| BsiEI | CGRYCG | 1 cut(s) | 2014 |
| BsiHKAI | GWGCWC | 2 cut(s) | 499, 3916 |
| BsiHKCI | CYCGRG | 3 cut(s) | 2942, 3542, 4429 |
| BsiSI | CCGG | 7 cut(s) | 131, 389, 552, 636, 2943, 4362, 4604 |
| BslFI | GGGAC | 4 cut(s) | 938, 1273, 2614, 3079 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 130, 677, 934, 1107, 2454, 3337, 3650, 4361 |
| BsmBI | CGTCTC | 1 cut(s) | 4530 |
| BsmFI | GGGAC | 4 cut(s) | 938, 1273, 2614, 3079 |
| BsmI | GAATGC | 2 cut(s) | 3162, 3932 |
| BsnI | GGCC | 9 cut(s) | 481, 611, 1123, 1395, 1802, 2005, 2947, 3679, 3710 |
| Bso31I | GGTCTC | 3 cut(s) | 2780, 4038, 4484 |
| BsoBI | CYCGRG | 3 cut(s) | 2942, 3542, 4429 |
| Bsp119I | TTCGAA | 1 cut(s) | 2060 |
| Bsp1286I | GDGCHC | 2 cut(s) | 499, 3916 |
| Bsp1407I | TGTACA | 2 cut(s) | 4008, 4598 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 3867, 4103 |
| Bsp19I | CCATGG | 2 cut(s) | 3674, 4323 |
| BspACI | CCGC | 4 cut(s) | 240, 446, 1980, 4494 |
| BspANI | GGCC | 9 cut(s) | 481, 611, 1123, 1395, 1802, 2005, 2947, 3679, 3710 |
| BspDI | ATCGAT | 2 cut(s) | 2010, 2049 |
| BspFNI | CGCG | 1 cut(s) | 446 |
| BspHI | TCATGA | 3 cut(s) | 3315, 3373, 3976 |
| BspMAI | CTGCAG | 2 cut(s) | 3552, 3988 |
| BspMI | ACCTGC | 5 cut(s) | 1157, 2314, 4347, 4471, 4719 |
| BspOI | GCTAGC | 2 cut(s) | 2754, 4221 |
| BspPI | GGATC | 6 cut(s) | 456, 1779, 1792, 2854, 4298, 4346 |
| BspQI | GCTCTTC | 2 cut(s) | 3822, 4521 |
| BspT104I | TTCGAA | 1 cut(s) | 2060 |
| BspT107I | GGYRCC | 2 cut(s) | 638, 2519 |
| BspTI | CTTAAG | 2 cut(s) | 665, 3167 |
| BspTNI | GGTCTC | 3 cut(s) | 2780, 4038, 4484 |
| BsrDI | GCAATG | 2 cut(s) | 2647, 2904 |
| BsrFI | RCCGGY | 1 cut(s) | 635 |
| BsrGI | TGTACA | 2 cut(s) | 4008, 4598 |
| BsrI | ACTGG | 7 cut(s) | 905, 1024, 1060, 1111, 2070, 3113, 4665 |
| BssAI | RCCGGY | 1 cut(s) | 635 |
| BssT1I | CCWWGG | 7 cut(s) | 1200, 1788, 1804, 2976, 3674, 4277, 4323 |
| Bst2UI | CCWGG | 3 cut(s) | 1313, 2757, 3026 |
| BstAFI | CTTAAG | 2 cut(s) | 665, 3167 |
| BstAUI | TGTACA | 2 cut(s) | 4008, 4598 |
| BstBAI | YACGTR | 1 cut(s) | 2894 |
| BstBI | TTCGAA | 1 cut(s) | 2060 |
| BstDSI | CCRYGG | 4 cut(s) | 3460, 3674, 4028, 4323 |
| BstEII | GGTNACC | 1 cut(s) | 527 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3648 |
| BstFNI | CGCG | 1 cut(s) | 446 |
| BstH2I | RGCGCY | 3 cut(s) | 2434, 3835, 4076 |
| BstHHI | GCGC | 5 cut(s) | 1687, 2433, 3834, 4075, 4728 |
| BstMCI | CGRYCG | 1 cut(s) | 2014 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 288, 735, 1163, 1271, 2270, 3747 |
| BstNI | CCWGG | 3 cut(s) | 1313, 2757, 3026 |
| BstNSI | RCATGY | 2 cut(s) | 2313, 3866 |
| BstPI | GGTNACC | 1 cut(s) | 527 |
| BstSCI | CCNGG | 7 cut(s) | 551, 1311, 2755, 2941, 2942, 3024, 4360 |
| BstSFI | CTRYAG | 3 cut(s) | 2127, 3548, 3984 |
| BstSLI | GKGCMC | 1 cut(s) | 3916 |
| BstUI | CGCG | 1 cut(s) | 446 |
| BstV2I | GAAGAC | 3 cut(s) | 804, 911, 3111 |
| BstX2I | RGATCY | 7 cut(s) | 135, 448, 623, 1011, 1784, 2859, 4351 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1391, 2983 |
| BstYI | RGATCY | 7 cut(s) | 135, 448, 623, 1011, 1784, 2859, 4351 |
| Bsu15I | ATCGAT | 2 cut(s) | 2010, 2049 |
| BsuI | GTATCC | 4 cut(s) | 385, 683, 1978, 3352 |
| BsuRI | GGCC | 9 cut(s) | 481, 611, 1123, 1395, 1802, 2005, 2947, 3679, 3710 |
| BsuTUI | ATCGAT | 2 cut(s) | 2010, 2049 |
| BtgI | CCRYGG | 4 cut(s) | 3460, 3674, 4028, 4323 |
| BtgZI | GCGATG | 1 cut(s) | 4200 |
| BtrI | CACGTC | 2 cut(s) | 2319, 4098 |
| BtsI | GCAGTG | 1 cut(s) | 3981 |
| BtsIMutI | CAGTG | 7 cut(s) | 24, 113, 1031, 1593, 3771, 3981, 3999 |
| BveI | ACCTGC | 5 cut(s) | 1157, 2314, 4347, 4471, 4719 |
| CaiI | CAGNNNCTG | 1 cut(s) | 741 |
| CciI | TCATGA | 3 cut(s) | 3315, 3373, 3976 |
| CfoI | GCGC | 5 cut(s) | 1687, 2433, 3834, 4075, 4728 |
| Cfr10I | RCCGGY | 1 cut(s) | 635 |
| Cfr9I | CCCGGG | 1 cut(s) | 2942 |
| ClaI | ATCGAT | 2 cut(s) | 2010, 2049 |
| CseI | GACGC | 1 cut(s) | 4547 |
| Csp6I | GTAC | 7 cut(s) | 801, 2695, 3297, 3306, 3769, 4009, 4599 |
| CspAI | ACCGGT | 1 cut(s) | 635 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 458, 493 |
| CviQI | GTAC | 7 cut(s) | 801, 2695, 3297, 3306, 3769, 4009, 4599 |
| DraI | TTTAAA | 1 cut(s) | 3783 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 826 |
| DriI | GACNNNNNGTC | 2 cut(s) | 880, 4543 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 826 |
| EaeI | YGGCCR | 3 cut(s) | 1393, 3677, 3708 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 880, 4543 |
| EciI | GGCGGA | 1 cut(s) | 255 |
| Ecl136II | GAGCTC | 1 cut(s) | 497 |
| Eco130I | CCWWGG | 7 cut(s) | 1200, 1788, 1804, 2976, 3674, 4277, 4323 |
| Eco147I | AGGCCT | 2 cut(s) | 1123, 2005 |
| Eco24I | GRGCYC | 1 cut(s) | 499 |
| Eco31I | GGTCTC | 3 cut(s) | 2780, 4038, 4484 |
| Eco32I | GATATC | 1 cut(s) | 3539 |
| Eco47I | GGWCC | 8 cut(s) | 79, 698, 925, 2344, 2487, 3066, 3465, 4175 |
| Eco47III | AGCGCT | 2 cut(s) | 2432, 4074 |
| Eco53kI | GAGCTC | 1 cut(s) | 497 |
| Eco57I | CTGAAG | 3 cut(s) | 718, 4230, 4386 |
| Eco88I | CYCGRG | 3 cut(s) | 2942, 3542, 4429 |
| Eco91I | GGTNACC | 1 cut(s) | 527 |
| EcoICRI | GAGCTC | 1 cut(s) | 497 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3648 |
| EcoO109I | RGGNCCY | 6 cut(s) | 79, 609, 698, 925, 1801, 3465 |
| EcoO65I | GGTNACC | 1 cut(s) | 527 |
| EcoRII | CCWGG | 3 cut(s) | 1311, 2755, 3024 |
| EcoRV | GATATC | 1 cut(s) | 3539 |
| EcoT14I | CCWWGG | 7 cut(s) | 1200, 1788, 1804, 2976, 3674, 4277, 4323 |
| EcoT22I | ATGCAT | 1 cut(s) | 1728 |
| EcoT38I | GRGCYC | 1 cut(s) | 499 |
| ErhI | CCWWGG | 7 cut(s) | 1200, 1788, 1804, 2976, 3674, 4277, 4323 |
| Esp3I | CGTCTC | 1 cut(s) | 4530 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 183, 215, 296, 328, 4500, 4532 |
| FaqI | GGGAC | 4 cut(s) | 938, 1273, 2614, 3079 |
| FauI | CCCGC | 1 cut(s) | 1973 |
| FblI | GTMKAC | 2 cut(s) | 1616, 3883 |
| FriOI | GRGCYC | 1 cut(s) | 499 |
| FspAI | RTGCGCAY | 1 cut(s) | 1686 |
| FspBI | CTAG | 9 cut(s) | 99, 1760, 2751, 3363, 3747, 4079, 4218, 4272, 4550 |
| FspI | TGCGCA | 2 cut(s) | 1686, 4727 |
| GlaI | GCGC | 5 cut(s) | 1686, 2432, 3833, 4074, 4727 |
| GsaI | CCCAGC | 2 cut(s) | 1911, 2268 |
| GsuI | CTGGAG | 5 cut(s) | 275, 1007, 1712, 2645, 3047 |
| HaeII | RGCGCY | 3 cut(s) | 2434, 3835, 4076 |
| HaeIII | GGCC | 9 cut(s) | 481, 611, 1123, 1395, 1802, 2005, 2947, 3679, 3710 |
| HapII | CCGG | 7 cut(s) | 131, 389, 552, 636, 2943, 4362, 4604 |
| HgaI | GACGC | 1 cut(s) | 4547 |
| HhaI | GCGC | 5 cut(s) | 1687, 2433, 3834, 4075, 4728 |
| Hin6I | GCGC | 5 cut(s) | 1685, 2431, 3832, 4073, 4726 |
| HinP1I | GCGC | 5 cut(s) | 1685, 2431, 3832, 4073, 4726 |
| HincII | GTYRAC | 2 cut(s) | 157, 1617 |
| HindII | GTYRAC | 2 cut(s) | 157, 1617 |
| HindIII | AAGCTT | 4 cut(s) | 964, 1378, 2036, 3891 |
| HpaII | CCGG | 7 cut(s) | 131, 389, 552, 636, 2943, 4362, 4604 |
| HphI | GGTGA | 4 cut(s) | 175, 539, 4228, 4747 |
| Hpy99I | CGWCG | 3 cut(s) | 934, 1621, 4102 |
| HpyCH4IV | ACGT | 8 cut(s) | 328, 775, 1870, 2318, 2882, 2893, 3856, 4097 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 288, 735, 1163, 1271, 2270, 3747 |
| HpySE526I | ACGT | 8 cut(s) | 328, 775, 1870, 2318, 2882, 2893, 3856, 4097 |
| HspAI | GCGC | 5 cut(s) | 1685, 2431, 3832, 4073, 4726 |
| KflI | GGGWCCC | 1 cut(s) | 925 |
| LguI | GCTCTTC | 2 cut(s) | 3822, 4521 |
| LmnI | GCTCC | 6 cut(s) | 494, 1898, 2278, 3586, 4024, 4408 |
| MaeI | CTAG | 9 cut(s) | 99, 1760, 2751, 3363, 3747, 4079, 4218, 4272, 4550 |
| MaeII | ACGT | 8 cut(s) | 328, 775, 1870, 2318, 2882, 2893, 3856, 4097 |
| MflI | RGATCY | 7 cut(s) | 135, 448, 623, 1011, 1784, 2859, 4351 |
| MhlI | GDGCHC | 2 cut(s) | 499, 3916 |
| MlsI | TGGCCA | 1 cut(s) | 3710 |
| MluNI | TGGCCA | 1 cut(s) | 3710 |
| MlyI | GAGTC | 8 cut(s) | 266, 836, 2102, 2636, 3251, 3628, 3676, 4784 |
| MmeI | TCCRAC | 5 cut(s) | 912, 1762, 2322, 2326, 2887 |
| Mox20I | TGGCCA | 1 cut(s) | 3710 |
| Mph1103I | ATGCAT | 1 cut(s) | 1728 |
| MroXI | GAANNNNTTC | 1 cut(s) | 839 |
| MscI | TGGCCA | 1 cut(s) | 3710 |
| MslI | CAYNNNNRTG | 3 cut(s) | 101, 3087, 4527 |
| Msp20I | TGGCCA | 1 cut(s) | 3710 |
| MspCI | CTTAAG | 2 cut(s) | 665, 3167 |
| MspI | CCGG | 7 cut(s) | 131, 389, 552, 636, 2943, 4362, 4604 |
| MspR9I | CCNGG | 7 cut(s) | 553, 1313, 2757, 2943, 2944, 3026, 4362 |
| Mva1269I | GAATGC | 2 cut(s) | 3162, 3932 |
| MvaI | CCWGG | 3 cut(s) | 1313, 2757, 3026 |
| MvnI | CGCG | 1 cut(s) | 446 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 288, 735, 1163, 1271, 2270, 3747 |
| NciI | CCSGG | 4 cut(s) | 553, 2943, 2944, 4362 |
| NcoI | CCATGG | 2 cut(s) | 3674, 4323 |
| NheI | GCTAGC | 2 cut(s) | 2750, 4217 |
| NmeAIII | GCCGAG | 2 cut(s) | 3085, 3839 |
| NmuCI | GTSAC | 5 cut(s) | 527, 3172, 3243, 3334, 4044 |
| NsbI | TGCGCA | 2 cut(s) | 1686, 4727 |
| NsiI | ATGCAT | 1 cut(s) | 1728 |
| NspI | RCATGY | 2 cut(s) | 2313, 3866 |
| NspV | TTCGAA | 1 cut(s) | 2060 |
| OliI | CACNNNNGTG | 1 cut(s) | 101 |
| PaeI | GCATGC | 1 cut(s) | 2313 |
| PagI | TCATGA | 3 cut(s) | 3315, 3373, 3976 |
| PaqCI | CACCTGC | 1 cut(s) | 1157 |
| PceI | AGGCCT | 2 cut(s) | 1123, 2005 |
| PciSI | GCTCTTC | 2 cut(s) | 3822, 4521 |
| PctI | GAATGC | 2 cut(s) | 3162, 3932 |
| PdmI | GAANNNNTTC | 1 cut(s) | 839 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 677 |
| PfoI | TCCNGGA | 1 cut(s) | 3024 |
| PinAI | ACCGGT | 1 cut(s) | 635 |
| Ple19I | CGATCG | 1 cut(s) | 2014 |
| PleI | GAGTC | 8 cut(s) | 265, 835, 2102, 2635, 3250, 3628, 3676, 4784 |
| PpsI | GAGTC | 8 cut(s) | 265, 835, 2102, 2635, 3250, 3628, 3676, 4784 |
| Ppu21I | YACGTR | 1 cut(s) | 2894 |
| PpuMI | RGGWCCY | 4 cut(s) | 79, 698, 925, 3465 |
| PshBI | ATTAAT | 2 cut(s) | 2810, 3150 |
| Psp124BI | GAGCTC | 1 cut(s) | 499 |
| Psp1406I | AACGTT | 1 cut(s) | 2882 |
| Psp5II | RGGWCCY | 4 cut(s) | 79, 698, 925, 3465 |
| Psp6I | CCWGG | 3 cut(s) | 1311, 2755, 3024 |
| PspEI | GGTNACC | 1 cut(s) | 527 |
| PspFI | CCCAGC | 2 cut(s) | 1907, 2264 |
| PspGI | CCWGG | 3 cut(s) | 1311, 2755, 3024 |
| PspPPI | RGGWCCY | 4 cut(s) | 79, 698, 925, 3465 |
| PstI | CTGCAG | 2 cut(s) | 3552, 3988 |
| PstNI | CAGNNNCTG | 1 cut(s) | 741 |
| PsuI | RGATCY | 7 cut(s) | 135, 448, 623, 1011, 1784, 2859, 4351 |
| PvuI | CGATCG | 1 cut(s) | 2014 |
| RsaI | GTAC | 7 cut(s) | 802, 2696, 3298, 3307, 3770, 4010, 4600 |
| RsaNI | GTAC | 7 cut(s) | 801, 2695, 3297, 3306, 3769, 4009, 4599 |
| RseI | CAYNNNNRTG | 3 cut(s) | 101, 3087, 4527 |
| SacI | GAGCTC | 1 cut(s) | 499 |
| SalI | GTCGAC | 1 cut(s) | 1615 |
| SapI | GCTCTTC | 2 cut(s) | 3822, 4521 |
| SchI | GAGTC | 8 cut(s) | 266, 836, 2102, 2636, 3251, 3628, 3676, 4784 |
| ScrFI | CCNGG | 7 cut(s) | 553, 1313, 2757, 2943, 2944, 3026, 4362 |
| SduI | GDGCHC | 2 cut(s) | 499, 3916 |
| SfcI | CTRYAG | 3 cut(s) | 2127, 3548, 3984 |
| SfuI | TTCGAA | 1 cut(s) | 2060 |
| SinI | GGWCC | 8 cut(s) | 79, 698, 925, 2344, 2487, 3066, 3465, 4175 |
| SmaI | CCCGGG | 1 cut(s) | 2944 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 101, 3087, 4527 |
| SmlI | CTYRAG | 6 cut(s) | 665, 1034, 1266, 1286, 2783, 3167 |
| SmoI | CTYRAG | 6 cut(s) | 665, 1034, 1266, 1286, 2783, 3167 |
| SpeI | ACTAGT | 1 cut(s) | 98 |
| SphI | GCATGC | 1 cut(s) | 2313 |
| SseBI | AGGCCT | 2 cut(s) | 1123, 2005 |
| SsiI | CCGC | 4 cut(s) | 240, 446, 1980, 4494 |
| SspI | AATATT | 3 cut(s) | 1648, 3799, 4124 |
| SspMI | CTAG | 9 cut(s) | 99, 1760, 2751, 3363, 3747, 4079, 4218, 4272, 4550 |
| SstI | GAGCTC | 1 cut(s) | 499 |
| StuI | AGGCCT | 2 cut(s) | 1123, 2005 |
| StyD4I | CCNGG | 7 cut(s) | 551, 1311, 2755, 2941, 2942, 3024, 4360 |
| StyI | CCWWGG | 7 cut(s) | 1200, 1788, 1804, 2976, 3674, 4277, 4323 |
| TaiI | ACGT | 8 cut(s) | 331, 778, 1873, 2321, 2885, 2896, 3859, 4100 |
| TaqII | GACCGA | 2 cut(s) | 870, 3083 |
| TatI | WGTACW | 5 cut(s) | 2694, 3296, 3768, 4008, 4598 |
| TscAI | CASTG | 7 cut(s) | 24, 120, 1031, 1593, 3778, 3988, 3999 |
| TseFI | GTSAC | 5 cut(s) | 527, 3172, 3243, 3334, 4044 |
| Tsp45I | GTSAC | 5 cut(s) | 527, 3172, 3243, 3334, 4044 |
| TspMI | CCCGGG | 1 cut(s) | 2942 |
| TspRI | CASTG | 7 cut(s) | 24, 120, 1031, 1593, 3778, 3988, 3999 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 677 |
| Vha464I | CTTAAG | 2 cut(s) | 665, 3167 |
| VneI | GTGCAC | 1 cut(s) | 3912 |
| VpaK11BI | GGWCC | 8 cut(s) | 79, 698, 925, 2344, 2487, 3066, 3465, 4175 |
| VspI | ATTAAT | 2 cut(s) | 2810, 3150 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3648 |
| XapI | RAATTY | 5 cut(s) | 995, 1335, 2055, 2989, 4771 |
| XbaI | TCTAGA | 2 cut(s) | 1759, 4549 |
| XceI | RCATGY | 2 cut(s) | 2313, 3866 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1437 |
| XmaI | CCCGGG | 1 cut(s) | 2942 |
| XmiI | GTMKAC | 2 cut(s) | 1616, 3883 |
| XmnI | GAANNNNTTC | 1 cut(s) | 839 |
| XspI | CTAG | 9 cut(s) | 99, 1760, 2751, 3363, 3747, 4079, 4218, 4272, 4550 |
| Zsp2I | ATGCAT | 1 cut(s) | 1728 |