Rw6G017380

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0001133
Physical Location & Seq
Reverse (-)
34478481 .. 34479121
641 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G017380.1

Sequence Viewer

Length: 306 bp
ATGCGCACCATGCTCGACACCGGTGACGGCGTCGCTAGGGTTCGTGAGACAGAGAGCAAGAGGCATCTCCGTCTTTCTTGGCTATGTTGGTGCCTGACGTTTGCGTGGCTGGTACTCAAATGGAAAATATGGTTTTTGAAATTGTCAGCTCTGATGGTGTTGTTGATGATACTATTCATCATGACGAGAAAAGTGGCCGATTCATCATCCATGGAGGAATCCCTTCGATGCACATTCAAGCATGGACGATGTACAATACCAAGACGCCCACACCCTACCTCGAAGAGTAGGGACTTATTATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

12.0

Weight (kDa)

10.23

Isoelectric Point (pI)

48.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 5
AccB1I GGYRCC 1 cut(s) 90
AcoI YGGCCR 1 cut(s) 195
AcyI GRCGYC 2 cut(s) 30, 265
AfaI GTAC 2 cut(s) 114, 253
AgeI ACCGGT 1 cut(s) 20
AgsI TTSAA 2 cut(s) 139, 238
AluBI AGCT 1 cut(s) 149
AluI AGCT 1 cut(s) 149
Alw26I GTCTC 1 cut(s) 41
AoxI GGCC 1 cut(s) 195
AsiGI ACCGGT 1 cut(s) 20
Asp700I GAANNNNTTC 1 cut(s) 222
AspLEI GCGC 1 cut(s) 6
AsuHPI GGTGA 1 cut(s) 35
BanI GGYRCC 1 cut(s) 90
BccI CCATC 1 cut(s) 148
BceAI ACGGC 1 cut(s) 43
BcgI CGANNNNNNTGC 1 cut(s) 29
BcoDI GTCTC 1 cut(s) 41
BfaI CTAG 1 cut(s) 36
BmiI GGNNCC 1 cut(s) 92
BmsI GCATC 2 cut(s) 73, 218
BsaHI GRCGYC 2 cut(s) 30, 265
BsaJI CCNNGG 1 cut(s) 210
BsaWI WCCGGW 1 cut(s) 20
Bse118I RCCGGY 1 cut(s) 20
BseDI CCNNGG 1 cut(s) 210
BseGI GGATG 1 cut(s) 206
BshFI GGCC 1 cut(s) 197
BshNI GGYRCC 1 cut(s) 90
BshTI ACCGGT 1 cut(s) 20
BsiSI CCGG 1 cut(s) 21
BsmAI GTCTC 1 cut(s) 41
BsnI GGCC 1 cut(s) 197
Bsp1407I TGTACA 1 cut(s) 251
Bsp19I CCATGG 1 cut(s) 210
BspANI GGCC 1 cut(s) 197
BspHI TCATGA 1 cut(s) 180
BspLI GGNNCC 1 cut(s) 92
BspT107I GGYRCC 1 cut(s) 90
BsrFI RCCGGY 1 cut(s) 20
BsrGI TGTACA 1 cut(s) 251
BssAI RCCGGY 1 cut(s) 20
BssECI CCNNGG 1 cut(s) 210
BssNI GRCGYC 2 cut(s) 30, 265
BssT1I CCWWGG 1 cut(s) 210
Bst6I CTCTTC 1 cut(s) 278
BstACI GRCGYC 2 cut(s) 30, 265
BstAUI TGTACA 1 cut(s) 251
BstDSI CCRYGG 1 cut(s) 210
BstF5I GGATG 1 cut(s) 206
BstHHI GCGC 1 cut(s) 6
BstMAI GTCTC 1 cut(s) 41
BstMWI GCNNNNNNNGC 1 cut(s) 10
BsuRI GGCC 1 cut(s) 197
BtgI CCRYGG 1 cut(s) 210
BtsCI GGATG 1 cut(s) 206
CciI TCATGA 1 cut(s) 180
CfoI GCGC 1 cut(s) 6
Cfr10I RCCGGY 1 cut(s) 20
CseI GACGC 2 cut(s) 19, 273
Csp6I GTAC 2 cut(s) 113, 252
CspAI ACCGGT 1 cut(s) 20
CviAII CATG 4 cut(s) 10, 181, 211, 242
CviJI RGCY 4 cut(s) 82, 109, 149, 197
CviKI_1 RGCY 4 cut(s) 82, 109, 149, 197
CviQI GTAC 2 cut(s) 113, 252
EaeI YGGCCR 1 cut(s) 195
Eam1104I CTCTTC 1 cut(s) 278
EarI CTCTTC 1 cut(s) 278
Eco130I CCWWGG 1 cut(s) 210
EcoT14I CCWWGG 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 210
FaeI CATG 4 cut(s) 13, 184, 214, 245
FaiI YATR 7 cut(s) 11, 85, 130, 182, 212, 243, 301
FatI CATG 4 cut(s) 9, 180, 210, 241
FokI GGATG 1 cut(s) 193
FspAI RTGCGCAY 1 cut(s) 5
FspBI CTAG 1 cut(s) 36
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 1 cut(s) 5
HaeIII GGCC 1 cut(s) 197
HapII CCGG 1 cut(s) 21
HgaI GACGC 2 cut(s) 19, 273
HhaI GCGC 1 cut(s) 6
Hin1I GRCGYC 2 cut(s) 30, 265
Hin1II CATG 4 cut(s) 13, 184, 214, 245
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HinfI GANTC 2 cut(s) 200, 218
HpaII CCGG 1 cut(s) 21
HphI GGTGA 1 cut(s) 35
Hpy188I TCNGA 1 cut(s) 153
Hpy188III TCNNGA 2 cut(s) 44, 181
Hpy99I CGWCG 1 cut(s) 35
HpyAV CCTTC 1 cut(s) 233
HpyCH4IV ACGT 1 cut(s) 98
HpyCH4V TGCA 1 cut(s) 231
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpySE526I ACGT 1 cut(s) 98
Hsp92I GRCGYC 2 cut(s) 30, 265
Hsp92II CATG 4 cut(s) 13, 184, 214, 245
HspAI GCGC 1 cut(s) 4
LpnPI CCDG 3 cut(s) 34, 95, 107
LweI GCATC 2 cut(s) 73, 218
MaeI CTAG 1 cut(s) 36
MaeII ACGT 1 cut(s) 98
MaeIII GTNAC 1 cut(s) 23
MboII GAAGA 1 cut(s) 295
MluCI AATT 1 cut(s) 140
MnlI CCTC 3 cut(s) 54, 208, 289
MroXI GAANNNNTTC 1 cut(s) 222
MseI TTAA 1 cut(s) 304
MspI CCGG 1 cut(s) 21
MwoI GCNNNNNNNGC 1 cut(s) 10
NcoI CCATGG 1 cut(s) 210
NlaIII CATG 4 cut(s) 13, 184, 214, 245
NlaIV GGNNCC 1 cut(s) 92
NmuCI GTSAC 1 cut(s) 23
NsbI TGCGCA 1 cut(s) 5
PagI TCATGA 1 cut(s) 180
PdmI GAANNNNTTC 1 cut(s) 222
PfeI GAWTC 2 cut(s) 200, 218
PflFI GACNNNGTC 1 cut(s) 29
PinAI ACCGGT 1 cut(s) 20
PspN4I GGNNCC 1 cut(s) 92
PsyI GACNNNGTC 1 cut(s) 29
RsaI GTAC 2 cut(s) 114, 253
RsaNI GTAC 2 cut(s) 113, 252
SaqAI TTAA 1 cut(s) 304
SetI ASST 3 cut(s) 101, 151, 281
SfaNI GCATC 2 cut(s) 73, 218
SgrAI CRCCGGYG 1 cut(s) 20
Sse9I AATT 1 cut(s) 140
SspMI CTAG 1 cut(s) 36
StyI CCWWGG 1 cut(s) 210
TaiI ACGT 1 cut(s) 101
TaqI TCGA 3 cut(s) 15, 226, 281
TasI AATT 1 cut(s) 140
TatI WGTACW 1 cut(s) 251
TfiI GAWTC 2 cut(s) 200, 218
Tru1I TTAA 1 cut(s) 304
Tru9I TTAA 1 cut(s) 304
TseFI GTSAC 1 cut(s) 23
Tsp45I GTSAC 1 cut(s) 23
TspDTI ATGAA 2 cut(s) 166, 192
TspGWI ACGGA 1 cut(s) 59
Tth111I GACNNNGTC 1 cut(s) 29
XmnI GAANNNNTTC 1 cut(s) 222
XspI CTAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.