Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001133

Physical Location & Seq

Genomic Coordinates Reverse (-)

35980699 .. 35992445

Gene Structure 11747 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG200400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGATGGACCAGTTTCGAGTTGGGATTACAACATTTGTTGCTGATGTTACACATGCATTGCAACAGCCTGCTGAGAGAAAGTTGGATGACGGAGGTGTTGCCAGTGGTGGTCTTCGTGAATTGATACCATGTATTGCAAGGACAGCAGTTGCTGTTGGGGTGGATGCAATTTTCATGGAGGTACATGATGATCCTTCTAATGCGCCAGTTGATGGTCCAACACAATGGAAATCGTACTCCAGATTCCCCGACGCCTCATCCATCATCGTTTCGGTGTGGAACTCTTATCGCCTTCCTTCGCTAGAAGCCACAGAGACCAGACTGACCTGCGACTTGTCGGAGGTCGCCGACGACGAAGAAGAAGAGAGAAAAAGTTTGCTTCTCAATCTGATAGAAGTAGACAAGTCAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0005996 GO:0008150 GO:0008152 GO:0008676 GO:0009058 GO:0009059 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010306 GO:0010383 GO:0010393 GO:0010396 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016765 GO:0017144 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044283 GO:0044706 GO:0045229 GO:0045488 GO:0045489 GO:0046364 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052325 GO:0052546 GO:0060560 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

DAHP_synth_1

Protein Analysis

137

Amino Acids

15.07

Weight (kDa)

4.39

Isoelectric Point (pI)

34.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAHP_synth_1	PF00793	12 - 77	7.1e-08	DAHP synthetase I family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24275 AT5G24275 AT5G24275 AT5G24275 AT5G24280 AT5G24280 AT5G24280
fragaria_vesca	FvH4_7g31550 FvH4_7g31550 FvH4_7g32260
malus_domestica	MD07G1288100.v1.1
prunus_persica	Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1
pyrus_communis	pycom07g26090
rosa_chinensis	RchiOBHm_Chr1g0380531 RchiOBHm_Chr1g0381531
rosa_laevigata	RLG00000026287
rosa_multiflora	Rmu_co8450373.1_g000001 Rmu_sc0000701.1_g000020 Rmu_sc0002045.1_g000020 Rmu_sc0010633.1_g000011 Rmu_ssc0000015.1_g000008
rosa_roxburghii	Rroxscaffold_4G00279220
rosa_rugosa	Rorug01G0422200 Rorug01G0422300 Rorug06G0084200
rosa_samantha	Rh1AG446800 Rh1BG402100 Rh1CG416300 Rh1CG424300 Rh1DG432300 Rh2DG318300 Rh3BG122000 Rh5AG085500 Rh5AG170300 Rh5BG265400 Rh6AG200100 Rh6AG200300 Rh6AG200400 Rh6BG025800 Rh6BG203500 Rh6BG203600 Rh6BG203800 Rh6CG203700 Rh6CG203800 Rh6CG204000 Rh6DG195200
rosa_wichuraiana	Rw1G038870 Rw1G039500 Rw6G017380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	335
AccB7I	CCANNNNNTGG	1 cut(s)	212
AccI	GTMKAC	1 cut(s)	399
AclWI	GGATC	1 cut(s)	185
AcyI	GRCGYC	1 cut(s)	252
AfaI	GTAC	2 cut(s)	183, 236
AfiI	CCNNNNNNNGG	1 cut(s)	212
Alw26I	GTCTC	1 cut(s)	308
AlwI	GGATC	1 cut(s)	185
AlwNI	CAGNNNCTG	1 cut(s)	152
AspLEI	GCGC	1 cut(s)	205
AspS9I	GGNCC	2 cut(s)	7, 215
AvaII	GGWCC	2 cut(s)	7, 215
BbsI	GAAGAC	1 cut(s)	104
BccI	CCATC	2 cut(s)	206, 269
BcoDI	GTCTC	1 cut(s)	308
BfaI	CTAG	1 cut(s)	302
BfuAI	ACCTGC	1 cut(s)	335
Bme18I	GGWCC	2 cut(s)	7, 215
BmgT120I	GGNCC	2 cut(s)	7, 215
BmsI	GCATC	1 cut(s)	154
BpiI	GAAGAC	1 cut(s)	104
BpmI	CTGGAG	1 cut(s)	223
BsaHI	GRCGYC	1 cut(s)	252
BsaI	GGTCTC	1 cut(s)	308
Bsc4I	CCNNNNNNNGG	1 cut(s)	212
Bse1I	ACTGG	3 cut(s)	10, 102, 206
Bse3DI	GCAATG	1 cut(s)	56
BseGI	GGATG	3 cut(s)	91, 169, 257
BseLI	CCNNNNNNNGG	1 cut(s)	212
BseMI	GCAATG	1 cut(s)	56
BseMII	CTCAG	1 cut(s)	63
BseNI	ACTGG	3 cut(s)	10, 102, 206
BslI	CCNNNNNNNGG	1 cut(s)	212
BsmAI	GTCTC	1 cut(s)	308
Bso31I	GGTCTC	1 cut(s)	308
Bsp143I	GATC	1 cut(s)	190
BspCNI	CTCAG	1 cut(s)	64
BspMI	ACCTGC	1 cut(s)	335
BspPI	GGATC	1 cut(s)	185
BspTNI	GGTCTC	1 cut(s)	308
BsrDI	GCAATG	1 cut(s)	56
BsrI	ACTGG	3 cut(s)	10, 102, 206
BssMI	GATC	1 cut(s)	190
BssNI	GRCGYC	1 cut(s)	252
Bst6I	CTCTTC	1 cut(s)	357
BstACI	GRCGYC	1 cut(s)	252
BstC8I	GCNNGC	1 cut(s)	69
BstDEI	CTNAG	1 cut(s)	72
BstF5I	GGATG	3 cut(s)	91, 169, 257
BstHHI	GCGC	1 cut(s)	205
BstKTI	GATC	1 cut(s)	193
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	1 cut(s)	190
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstNSI	RCATGY	1 cut(s)	56
BstV2I	GAAGAC	1 cut(s)	104
BstXI	CCANNNNNNTGG	1 cut(s)	225
BtsCI	GGATG	3 cut(s)	91, 169, 257
BtsIMutI	CAGTG	1 cut(s)	109
BveI	ACCTGC	1 cut(s)	335
Cac8I	GCNNGC	1 cut(s)	69
CaiI	CAGNNNCTG	1 cut(s)	152
CfoI	GCGC	1 cut(s)	205
Cfr13I	GGNCC	2 cut(s)	7, 215
CseI	GACGC	1 cut(s)	260
Csp6I	GTAC	2 cut(s)	182, 235
CviAII	CATG	4 cut(s)	53, 129, 175, 185
CviJI	RGCY	2 cut(s)	67, 308
CviKI_1	RGCY	2 cut(s)	67, 308
CviQI	GTAC	2 cut(s)	182, 235
DdeI	CTNAG	1 cut(s)	72
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
Eam1104I	CTCTTC	1 cut(s)	357
EarI	CTCTTC	1 cut(s)	357
Eco31I	GGTCTC	1 cut(s)	308
Eco47I	GGWCC	2 cut(s)	7, 215
EcoT22I	ATGCAT	1 cut(s)	58
FaeI	CATG	4 cut(s)	56, 132, 178, 188
FaiI	YATR	4 cut(s)	54, 130, 176, 186
FatI	CATG	4 cut(s)	52, 128, 174, 184
FblI	GTMKAC	1 cut(s)	399
FokI	GGATG	3 cut(s)	98, 176, 244
FspBI	CTAG	1 cut(s)	302
GlaI	GCGC	1 cut(s)	204
GsuI	CTGGAG	1 cut(s)	223
HgaI	GACGC	1 cut(s)	260
HhaI	GCGC	1 cut(s)	205
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	4 cut(s)	56, 132, 178, 188
Hin6I	GCGC	1 cut(s)	203
HinP1I	GCGC	1 cut(s)	203
HinfI	GANTC	1 cut(s)	243
Hpy166II	GTNNAC	1 cut(s)	400
Hpy188I	TCNGA	2 cut(s)	340, 390
Hpy188III	TCNNGA	2 cut(s)	116, 240
Hpy8I	GTNNAC	1 cut(s)	400
Hpy99I	CGWCG	3 cut(s)	254, 353, 356
HpyAV	CCTTC	3 cut(s)	204, 302, 306
HpyCH4V	TGCA	4 cut(s)	56, 61, 137, 167
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
HpyF3I	CTNAG	1 cut(s)	72
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	4 cut(s)	56, 132, 178, 188
HspAI	GCGC	1 cut(s)	203
Kzo9I	GATC	1 cut(s)	190
LpnPI	CCDG	7 cut(s)	23, 81, 115, 219, 253, 331, 340
LweI	GCATC	1 cut(s)	154
MaeI	CTAG	1 cut(s)	302
MaeIII	GTNAC	1 cut(s)	46
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MboII	GAAGA	4 cut(s)	104, 368, 371, 374
MluCI	AATT	2 cut(s)	119, 168
MmeI	TCCRAC	3 cut(s)	63, 242, 318
MnlI	CCTC	4 cut(s)	86, 172, 265, 334
Mph1103I	ATGCAT	1 cut(s)	58
MwoI	GCNNNNNNNGC	1 cut(s)	143
NdeII	GATC	1 cut(s)	190
NlaIII	CATG	4 cut(s)	56, 132, 178, 188
NsiI	ATGCAT	1 cut(s)	58
NspI	RCATGY	1 cut(s)	56
PcsI	WCGNNNNNNNCGW	1 cut(s)	351
PfeI	GAWTC	1 cut(s)	243
PflMI	CCANNNNNTGG	1 cut(s)	212
PspPI	GGNCC	2 cut(s)	7, 215
PstNI	CAGNNNCTG	1 cut(s)	152
RsaI	GTAC	2 cut(s)	183, 236
RsaNI	GTAC	2 cut(s)	182, 235
Sau3AI	GATC	1 cut(s)	190
Sau96I	GGNCC	2 cut(s)	7, 215
SetI	ASST	4 cut(s)	97, 183, 329, 345
SfaNI	GCATC	1 cut(s)	154
SinI	GGWCC	2 cut(s)	7, 215
Sse9I	AATT	2 cut(s)	119, 168
SspMI	CTAG	1 cut(s)	302
TaqI	TCGA	1 cut(s)	16
TasI	AATT	2 cut(s)	119, 168
TfiI	GAWTC	1 cut(s)	243
TscAI	CASTG	1 cut(s)	109
TspDTI	ATGAA	1 cut(s)	163
TspGWI	ACGGA	1 cut(s)	105
TspRI	CASTG	1 cut(s)	109
Van91I	CCANNNNNTGG	1 cut(s)	212
VpaK11BI	GGWCC	2 cut(s)	7, 215
XceI	RCATGY	1 cut(s)	56
XcmI	CCANNNNNNNNNTGG	1 cut(s)	17
XmiI	GTMKAC	1 cut(s)	399
XspI	CTAG	1 cut(s)	302
Zsp2I	ATGCAT	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.