Rh5AG170300

DAHP synthetase I family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
18821829 .. 18833304
11476 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG170300.1

Sequence Viewer

Length: 315 bp
ATGCATGGAGTAAATGCAATGCCAACCCCTGAAGCCCGAAGAGGTGTTGCCAATGGTGGTCTTCGTGAATTGATACCATGTATTGCGAGGACAGTAGTTGCTGTTGGAGTGGAGGGAATTTTCATGGAGGGACATGATGATCCTACTAATGCGCCAGTTGATGGTCCAACCCAATGGGTTGTAGCCGTTGCGCCATTTGGAGGAACTACTGGTAGAGCTTATTGCAATTGCTGGAAGTCTCTTTACCCATCCATAATAAAAGCAGTTACAGATGGTACTCATTTTGATGCTAGATATCGATTCAATACTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

104

Amino Acids

11.16

Weight (kDa)

6.81

Isoelectric Point (pI)

26.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 161
AclWI GGATC 1 cut(s) 134
AcsI RAATTY 1 cut(s) 117
AcuI CTGAAG 1 cut(s) 51
AfaI GTAC 1 cut(s) 277
AfiI CCNNNNNNNGG 2 cut(s) 161, 200
AgsI TTSAA 1 cut(s) 304
AluBI AGCT 1 cut(s) 218
AluI AGCT 1 cut(s) 218
Alw26I GTCTC 1 cut(s) 243
AlwI GGATC 1 cut(s) 134
ApoI RAATTY 1 cut(s) 117
AspLEI GCGC 2 cut(s) 154, 193
AspS9I GGNCC 1 cut(s) 164
AvaII GGWCC 1 cut(s) 164
BarI GAAGNNNNNNTAC 2 cut(s) 227, 259
BbsI GAAGAC 1 cut(s) 53
BccI CCATC 3 cut(s) 155, 256, 266
BceAI ACGGC 1 cut(s) 170
BcoDI GTCTC 1 cut(s) 243
BfaI CTAG 1 cut(s) 291
Bme18I GGWCC 1 cut(s) 164
BmgT120I GGNCC 1 cut(s) 164
BmsI GCATC 1 cut(s) 277
BpiI GAAGAC 1 cut(s) 53
Bsa29I ATCGAT 1 cut(s) 298
Bsc4I CCNNNNNNNGG 2 cut(s) 161, 200
Bse1I ACTGG 2 cut(s) 155, 214
Bse3DI GCAATG 1 cut(s) 24
BseCI ATCGAT 1 cut(s) 298
BseGI GGATG 1 cut(s) 248
BseLI CCNNNNNNNGG 2 cut(s) 161, 200
BseMI GCAATG 1 cut(s) 24
BseNI ACTGG 2 cut(s) 155, 214
BshVI ATCGAT 1 cut(s) 298
BslFI GGGAC 1 cut(s) 144
BslI CCNNNNNNNGG 2 cut(s) 161, 200
BsmAI GTCTC 1 cut(s) 243
BsmFI GGGAC 1 cut(s) 144
Bsp143I GATC 1 cut(s) 139
BspDI ATCGAT 1 cut(s) 298
BspPI GGATC 1 cut(s) 134
BsrDI GCAATG 1 cut(s) 24
BsrI ACTGG 2 cut(s) 155, 214
BssMI GATC 1 cut(s) 139
Bst4CI ACNGT 1 cut(s) 94
Bst6I CTCTTC 1 cut(s) 34
BstF5I GGATG 1 cut(s) 248
BstHHI GCGC 2 cut(s) 154, 193
BstKTI GATC 1 cut(s) 142
BstMAI GTCTC 1 cut(s) 243
BstMBI GATC 1 cut(s) 139
BstV2I GAAGAC 1 cut(s) 53
BstXI CCANNNNNNTGG 1 cut(s) 174
Bsu15I ATCGAT 1 cut(s) 298
BsuTUI ATCGAT 1 cut(s) 298
BtsCI GGATG 1 cut(s) 248
CfoI GCGC 2 cut(s) 154, 193
Cfr13I GGNCC 1 cut(s) 164
ClaI ATCGAT 1 cut(s) 298
Csp6I GTAC 1 cut(s) 276
CviAII CATG 4 cut(s) 5, 78, 124, 134
CviJI RGCY 3 cut(s) 35, 185, 218
CviKI_1 RGCY 3 cut(s) 35, 185, 218
CviQI GTAC 1 cut(s) 276
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
Eam1104I CTCTTC 1 cut(s) 34
EarI CTCTTC 1 cut(s) 34
Eco32I GATATC 1 cut(s) 296
Eco47I GGWCC 1 cut(s) 164
Eco57I CTGAAG 1 cut(s) 51
EcoRV GATATC 1 cut(s) 296
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 4 cut(s) 8, 81, 127, 137
FaiI YATR 5 cut(s) 6, 79, 125, 135, 254
FaqI GGGAC 1 cut(s) 144
FatI CATG 4 cut(s) 4, 77, 123, 133
FokI GGATG 1 cut(s) 235
FspBI CTAG 1 cut(s) 291
GlaI GCGC 2 cut(s) 153, 192
HhaI GCGC 2 cut(s) 154, 193
Hin1II CATG 4 cut(s) 8, 81, 127, 137
Hin6I GCGC 2 cut(s) 152, 191
HinP1I GCGC 2 cut(s) 152, 191
HinfI GANTC 1 cut(s) 300
Hpy188I TCNGA 1 cut(s) 314
Hpy188III TCNNGA 1 cut(s) 65
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4V TGCA 3 cut(s) 4, 17, 225
Hsp92II CATG 4 cut(s) 8, 81, 127, 137
HspAI GCGC 2 cut(s) 152, 191
Kzo9I GATC 1 cut(s) 139
LpnPI CCDG 4 cut(s) 42, 168, 195, 217
LweI GCATC 1 cut(s) 277
MaeI CTAG 1 cut(s) 291
MaeIII GTNAC 1 cut(s) 265
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MboII GAAGA 2 cut(s) 51, 53
MfeI CAATTG 1 cut(s) 226
MluCI AATT 3 cut(s) 68, 117, 226
MmeI TCCRAC 2 cut(s) 85, 191
MnlI CCTC 5 cut(s) 35, 81, 106, 121, 194
Mph1103I ATGCAT 1 cut(s) 6
MslI CAYNNNNRTG 1 cut(s) 285
MunI CAATTG 1 cut(s) 226
NdeII GATC 1 cut(s) 139
NlaIII CATG 4 cut(s) 8, 81, 127, 137
NsiI ATGCAT 1 cut(s) 6
PfeI GAWTC 1 cut(s) 300
PflMI CCANNNNNTGG 1 cut(s) 161
PspPI GGNCC 1 cut(s) 164
RsaI GTAC 1 cut(s) 277
RsaNI GTAC 1 cut(s) 276
RseI CAYNNNNRTG 1 cut(s) 285
Sau3AI GATC 1 cut(s) 139
Sau96I GGNCC 1 cut(s) 164
SetI ASST 2 cut(s) 46, 220
SfaNI GCATC 1 cut(s) 277
SinI GGWCC 1 cut(s) 164
SmiMI CAYNNNNRTG 1 cut(s) 285
Sse9I AATT 3 cut(s) 68, 117, 226
SspMI CTAG 1 cut(s) 291
TaaI ACNGT 1 cut(s) 94
TaqI TCGA 1 cut(s) 298
TasI AATT 3 cut(s) 68, 117, 226
TfiI GAWTC 1 cut(s) 300
TspDTI ATGAA 1 cut(s) 112
Van91I CCANNNNNTGG 1 cut(s) 161
VpaK11BI GGWCC 1 cut(s) 164
XapI RAATTY 1 cut(s) 117
XspI CTAG 1 cut(s) 291
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.