Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001133

Physical Location & Seq

Genomic Coordinates Reverse (-)

38370786 .. 38405978

Gene Structure 35193 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG203800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGATGATGGATCAGTTTCGAGTTGGGATTACAACATTTACAGATCTTCTAGTTACAGCAGCCAAGACTGGAAAGATTGTCAATATTAAGAAGGGTCAATTCTGTGCTCCTTCTGTCATGGTAAATTCTGCTGAGAAGATTCGACTGGCAGGAAATCCAAATGTGATGGTTTGTGAGAGGGGAACTATGTTTGGTTATATTGAACTCTACATCCTCCTGTTGTTGGATGACGGAGGTGTTGCCAGTGGTGGTCTTCGTGAATTGATACCATGTATTGCAAGGACAGCAGTTGCTGTTGGGGTGGATGCAATTTTCATGGAGGTACATGATGATCCTTCTAATGCGCCAGTTGATGGTCCAACCCAATGGCCGTTGCGCCATTTGGAGGAACTACTGGTAGAGCTTATTGCAATTGCCGCAAGTCTCTTTACCCATCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0005996 GO:0008150 GO:0008152 GO:0008676 GO:0009058 GO:0009059 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010306 GO:0010383 GO:0010393 GO:0010396 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016765 GO:0017144 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044283 GO:0044706 GO:0045229 GO:0045488 GO:0045489 GO:0046364 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052325 GO:0052546 GO:0060560 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

DAHP_synth_1

Protein Analysis

146

Amino Acids

15.78

Weight (kDa)

5.06

Isoelectric Point (pI)

18.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAHP_synth_1	PF00793	13 - 66	8e-10	DAHP synthetase I family
DAHP_synth_1	PF00793	85 - 132	6.1e-06	DAHP synthetase I family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24275 AT5G24275 AT5G24275 AT5G24275 AT5G24280 AT5G24280 AT5G24280
fragaria_vesca	FvH4_7g31550 FvH4_7g31550 FvH4_7g32260
malus_domestica	MD07G1288100.v1.1
prunus_persica	Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1
pyrus_communis	pycom07g26090
rosa_chinensis	RchiOBHm_Chr1g0380531 RchiOBHm_Chr1g0381531
rosa_laevigata	RLG00000026287
rosa_multiflora	Rmu_co8450373.1_g000001 Rmu_sc0000701.1_g000020 Rmu_sc0002045.1_g000020 Rmu_sc0010633.1_g000011 Rmu_ssc0000015.1_g000008
rosa_roxburghii	Rroxscaffold_4G00279220
rosa_rugosa	Rorug01G0422200 Rorug01G0422300 Rorug06G0084200
rosa_samantha	Rh1AG446800 Rh1BG402100 Rh1CG416300 Rh1CG424300 Rh1DG432300 Rh2DG318300 Rh3BG122000 Rh5AG085500 Rh5AG170300 Rh5BG265400 Rh6AG200100 Rh6AG200300 Rh6AG200400 Rh6BG025800 Rh6BG203500 Rh6BG203600 Rh6BG203800 Rh6CG203700 Rh6CG203800 Rh6CG204000 Rh6DG195200
rosa_wichuraiana	Rw1G038870 Rw1G039500 Rw6G017380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	353
AciI	CCGC	1 cut(s)	417
AclWI	GGATC	2 cut(s)	18, 326
AcoI	YGGCCR	1 cut(s)	368
AcsI	RAATTY	1 cut(s)	124
AfaI	GTAC	1 cut(s)	324
AfiI	CCNNNNNNNGG	3 cut(s)	223, 353, 385
AgsI	TTSAA	1 cut(s)	203
AloI	GAACNNNNNNTCC	2 cut(s)	195, 227
AluBI	AGCT	1 cut(s)	403
AluI	AGCT	1 cut(s)	403
Alw21I	GWGCWC	1 cut(s)	109
Alw26I	GTCTC	1 cut(s)	428
AlwI	GGATC	2 cut(s)	18, 326
AlwNI	CAGNNNCTG	1 cut(s)	293
AoxI	GGCC	1 cut(s)	368
ApeKI	GCWGC	1 cut(s)	59
ApoI	RAATTY	1 cut(s)	124
AspLEI	GCGC	2 cut(s)	346, 378
AspS9I	GGNCC	1 cut(s)	356
AvaII	GGWCC	1 cut(s)	356
BbsI	GAAGAC	1 cut(s)	245
Bbv12I	GWGCWC	1 cut(s)	109
BbvI	GCAGC	1 cut(s)	71
BccI	CCATC	2 cut(s)	160, 347
BceAI	ACGGC	1 cut(s)	355
BcoDI	GTCTC	1 cut(s)	428
BfaI	CTAG	1 cut(s)	50
BglII	AGATCT	1 cut(s)	43
BisI	GCNGC	2 cut(s)	60, 417
BlsI	GCNGC	2 cut(s)	61, 418
Bme18I	GGWCC	1 cut(s)	356
BmgT120I	GGNCC	1 cut(s)	356
BmsI	GCATC	1 cut(s)	295
BpiI	GAAGAC	1 cut(s)	245
Bsc4I	CCNNNNNNNGG	3 cut(s)	223, 353, 385
Bse1I	ACTGG	5 cut(s)	73, 150, 243, 347, 399
BseGI	GGATG	4 cut(s)	210, 232, 310, 433
BseLI	CCNNNNNNNGG	3 cut(s)	223, 353, 385
BseMII	CTCAG	1 cut(s)	123
BseNI	ACTGG	5 cut(s)	73, 150, 243, 347, 399
BseXI	GCAGC	1 cut(s)	71
BshFI	GGCC	1 cut(s)	370
BsiHKAI	GWGCWC	1 cut(s)	109
BslI	CCNNNNNNNGG	3 cut(s)	223, 353, 385
BsmAI	GTCTC	1 cut(s)	428
BsnI	GGCC	1 cut(s)	370
Bsp1286I	GDGCHC	1 cut(s)	109
Bsp143I	GATC	3 cut(s)	10, 43, 331
BspACI	CCGC	1 cut(s)	417
BspANI	GGCC	1 cut(s)	370
BspCNI	CTCAG	1 cut(s)	124
BspPI	GGATC	2 cut(s)	18, 326
BsrI	ACTGG	5 cut(s)	73, 150, 243, 347, 399
BssMI	GATC	3 cut(s)	10, 43, 331
BstDEI	CTNAG	1 cut(s)	132
BstF5I	GGATG	4 cut(s)	210, 232, 310, 433
BstHHI	GCGC	2 cut(s)	346, 378
BstKTI	GATC	3 cut(s)	13, 46, 334
BstMAI	GTCTC	1 cut(s)	428
BstMBI	GATC	3 cut(s)	10, 43, 331
BstMWI	GCNNNNNNNGC	2 cut(s)	284, 416
BstV1I	GCAGC	1 cut(s)	71
BstV2I	GAAGAC	1 cut(s)	245
BstX2I	RGATCY	1 cut(s)	43
BstXI	CCANNNNNNTGG	1 cut(s)	366
BstYI	RGATCY	1 cut(s)	43
BsuRI	GGCC	1 cut(s)	370
BtsCI	GGATG	4 cut(s)	210, 232, 310, 433
BtsIMutI	CAGTG	1 cut(s)	250
CaiI	CAGNNNCTG	1 cut(s)	293
CfoI	GCGC	2 cut(s)	346, 378
Cfr13I	GGNCC	1 cut(s)	356
Csp6I	GTAC	1 cut(s)	323
CviAII	CATG	4 cut(s)	118, 270, 316, 326
CviJI	RGCY	3 cut(s)	62, 370, 403
CviKI_1	RGCY	3 cut(s)	62, 370, 403
CviQI	GTAC	1 cut(s)	323
DdeI	CTNAG	1 cut(s)	132
DpnI	GATC	3 cut(s)	12, 45, 333
DpnII	GATC	3 cut(s)	10, 43, 331
EaeI	YGGCCR	1 cut(s)	368
Eco47I	GGWCC	1 cut(s)	356
FaeI	CATG	4 cut(s)	121, 273, 319, 329
FaiI	YATR	7 cut(s)	119, 188, 198, 271, 317, 327, 439
FatI	CATG	4 cut(s)	117, 269, 315, 325
Fnu4HI	GCNGC	2 cut(s)	60, 417
FokI	GGATG	4 cut(s)	197, 239, 317, 420
Fsp4HI	GCNGC	2 cut(s)	60, 417
FspBI	CTAG	1 cut(s)	50
GlaI	GCGC	2 cut(s)	345, 377
GluI	GCNGC	2 cut(s)	60, 417
HaeIII	GGCC	1 cut(s)	370
HhaI	GCGC	2 cut(s)	346, 378
Hin1II	CATG	4 cut(s)	121, 273, 319, 329
Hin6I	GCGC	2 cut(s)	344, 376
HinP1I	GCGC	2 cut(s)	344, 376
HinfI	GANTC	1 cut(s)	139
Hpy188III	TCNNGA	1 cut(s)	257
HpyAV	CCTTC	3 cut(s)	85, 120, 345
HpyCH4V	TGCA	3 cut(s)	278, 308, 410
HpyF10VI	GCNNNNNNNGC	2 cut(s)	284, 416
HpyF3I	CTNAG	1 cut(s)	132
Hsp92II	CATG	4 cut(s)	121, 273, 319, 329
HspAI	GCGC	2 cut(s)	344, 376
Kzo9I	GATC	3 cut(s)	10, 43, 331
LmnI	GCTCC	1 cut(s)	112
LpnPI	CCDG	7 cut(s)	54, 131, 135, 230, 256, 360, 380
Lsp1109I	GCAGC	1 cut(s)	71
LweI	GCATC	1 cut(s)	295
MaeI	CTAG	1 cut(s)	50
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	3 cut(s)	12, 45, 333
MboI	GATC	3 cut(s)	10, 43, 331
MboII	GAAGA	3 cut(s)	38, 148, 245
MfeI	CAATTG	1 cut(s)	411
MflI	RGATCY	1 cut(s)	43
MhlI	GDGCHC	1 cut(s)	109
MluCI	AATT	5 cut(s)	98, 124, 260, 309, 411
MmeI	TCCRAC	2 cut(s)	204, 383
MnlI	CCTC	5 cut(s)	171, 224, 227, 313, 379
MseI	TTAA	1 cut(s)	87
MunI	CAATTG	1 cut(s)	411
MwoI	GCNNNNNNNGC	2 cut(s)	284, 416
NdeII	GATC	3 cut(s)	10, 43, 331
NlaIII	CATG	4 cut(s)	121, 273, 319, 329
PfeI	GAWTC	1 cut(s)	139
PflMI	CCANNNNNTGG	1 cut(s)	353
PkrI	GCNGC	2 cut(s)	61, 418
PspPI	GGNCC	1 cut(s)	356
PstNI	CAGNNNCTG	1 cut(s)	293
PsuI	RGATCY	1 cut(s)	43
RsaI	GTAC	1 cut(s)	324
RsaNI	GTAC	1 cut(s)	323
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	2 cut(s)	60, 417
Sau3AI	GATC	3 cut(s)	10, 43, 331
Sau96I	GGNCC	1 cut(s)	356
SduI	GDGCHC	1 cut(s)	109
SetI	ASST	3 cut(s)	238, 324, 405
SfaNI	GCATC	1 cut(s)	295
SinI	GGWCC	1 cut(s)	356
Sse9I	AATT	5 cut(s)	98, 124, 260, 309, 411
SsiI	CCGC	1 cut(s)	417
SspI	AATATT	1 cut(s)	85
SspMI	CTAG	1 cut(s)	50
TaqI	TCGA	2 cut(s)	19, 142
TasI	AATT	5 cut(s)	98, 124, 260, 309, 411
TauI	GCSGC	1 cut(s)	419
TfiI	GAWTC	1 cut(s)	139
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TscAI	CASTG	1 cut(s)	250
TseI	GCWGC	1 cut(s)	59
TspDTI	ATGAA	1 cut(s)	304
TspGWI	ACGGA	1 cut(s)	246
TspRI	CASTG	1 cut(s)	250
Van91I	CCANNNNNTGG	1 cut(s)	353
VpaK11BI	GGWCC	1 cut(s)	356
XapI	RAATTY	1 cut(s)	124
XspI	CTAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.