Rmu_sc0010633.1_g000011

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010633.1
OG0001133
Physical Location & Seq
Reverse (-)
40559 .. 41204
646 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010633.1_g000011.1.cds

Sequence Viewer

Length: 462 bp
atggattcctcaaggtcaattgatattcaatactgcaagtctgcaatcatggattcctcaaggtctttgacgaccaggctctttctctccctctccaagaagaggaacagaagctccaacgaagagaagagaggagaagagaagagaagagaagaggagagaagagaagcacgtactggaagagaagagaagcggctgctgcagatagtttggatccgacgtatccagaccgtatccaaatcaggatccgcgtatccacgcgtatccgagcgtatccgagcgtatcgtacccgtatcccggatcgaggaaagccgcccgtggactggcgcaaagcctgcaacctgatgcatacaccaagcagaagaattcttcaatttataatcttacacagaaataagagcatccataggaggactgctggcatcaaggatgatgagaagataacatcagaatccgattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

18.17

Weight (kDa)

10.86

Isoelectric Point (pI)

81.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 380
AccII CGCG 2 cut(s) 251, 261
AciI CCGC 3 cut(s) 193, 249, 314
AclWI GGATC 5 cut(s) 208, 221, 240, 253, 309
AcsI RAATTY 1 cut(s) 366
AfaI GTAC 2 cut(s) 175, 289
AfiI CCNNNNNNNGG 4 cut(s) 102, 298, 305, 324
AflIII ACRYGT 1 cut(s) 259
AgsI TTSAA 2 cut(s) 29, 374
AjnI CCWGG 1 cut(s) 74
AloI GAACNNNNNNTCC 2 cut(s) 98, 130
AluBI AGCT 1 cut(s) 114
AluI AGCT 1 cut(s) 114
AlwI GGATC 5 cut(s) 208, 221, 240, 253, 309
ApeKI GCWGC 2 cut(s) 196, 199
ApoI RAATTY 1 cut(s) 366
AspLEI GCGC 1 cut(s) 330
AsuC2I CCSGG 1 cut(s) 299
BamHI GGATCC 2 cut(s) 213, 245
BbvI GCAGC 2 cut(s) 183, 186
BciT130I CCWGG 1 cut(s) 76
BciVI GTATCC 6 cut(s) 233, 244, 264, 274, 284, 305
BcnI CCSGG 1 cut(s) 299
BfmI CTRYAG 1 cut(s) 200
BfuI GTATCC 6 cut(s) 233, 244, 264, 274, 284, 305
BisI GCNGC 4 cut(s) 194, 197, 200, 314
BlsI GCNGC 4 cut(s) 195, 198, 201, 315
Bme1390I CCNGG 2 cut(s) 76, 299
BmiI GGNNCC 2 cut(s) 215, 247
BmrFI CCNGG 2 cut(s) 76, 299
BmsI GCATC 3 cut(s) 336, 411, 432
BpuEI CTTGAG 1 cut(s) 43
BpuMI CCSGG 1 cut(s) 299
BsaAI YACGTR 1 cut(s) 173
BsaJI CCNNGG 1 cut(s) 318
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bsc4I CCNNNNNNNGG 4 cut(s) 102, 298, 305, 324
Bse1I ACTGG 2 cut(s) 181, 329
BseBI CCWGG 1 cut(s) 76
BseDI CCNNGG 1 cut(s) 318
BseGI GGATG 2 cut(s) 402, 436
BseLI CCNNNNNNNGG 4 cut(s) 102, 298, 305, 324
BseNI ACTGG 2 cut(s) 181, 329
BseRI GAGGAG 2 cut(s) 147, 170
BseXI GCAGC 2 cut(s) 183, 186
Bsh1236I CGCG 2 cut(s) 251, 261
BsiSI CCGG 1 cut(s) 299
BslI CCNNNNNNNGG 4 cut(s) 102, 298, 305, 324
Bsp143I GATC 3 cut(s) 213, 245, 301
BspACI CCGC 3 cut(s) 193, 249, 314
BspFNI CGCG 2 cut(s) 251, 261
BspLI GGNNCC 2 cut(s) 215, 247
BspMAI CTGCAG 1 cut(s) 204
BspPI GGATC 5 cut(s) 208, 221, 240, 253, 309
BsrI ACTGG 2 cut(s) 181, 329
BssECI CCNNGG 1 cut(s) 318
BssMI GATC 3 cut(s) 213, 245, 301
Bst2UI CCWGG 1 cut(s) 76
Bst4CI ACNGT 1 cut(s) 232
BstAPI GCANNNNNTGC 1 cut(s) 336
BstBAI YACGTR 1 cut(s) 173
BstC8I GCNNGC 2 cut(s) 337, 421
BstDSI CCRYGG 1 cut(s) 318
BstF5I GGATG 2 cut(s) 402, 436
BstFNI CGCG 2 cut(s) 251, 261
BstHHI GCGC 1 cut(s) 330
BstKTI GATC 3 cut(s) 216, 248, 304
BstMBI GATC 3 cut(s) 213, 245, 301
BstMWI GCNNNNNNNGC 2 cut(s) 199, 336
BstNI CCWGG 1 cut(s) 76
BstSCI CCNGG 2 cut(s) 74, 297
BstSFI CTRYAG 1 cut(s) 200
BstUI CGCG 2 cut(s) 251, 261
BstV1I GCAGC 2 cut(s) 183, 186
BstX2I RGATCY 2 cut(s) 213, 245
BstYI RGATCY 2 cut(s) 213, 245
BsuI GTATCC 6 cut(s) 233, 244, 264, 274, 284, 305
BtgI CCRYGG 1 cut(s) 318
BtsCI GGATG 2 cut(s) 402, 436
Cac8I GCNNGC 2 cut(s) 337, 421
CfoI GCGC 1 cut(s) 330
Csp6I GTAC 2 cut(s) 174, 288
CviAII CATG 1 cut(s) 49
CviJI RGCY 5 cut(s) 79, 114, 196, 313, 335
CviKI_1 RGCY 5 cut(s) 79, 114, 196, 313, 335
CviQI GTAC 2 cut(s) 174, 288
DpnI GATC 3 cut(s) 215, 247, 303
DpnII GATC 3 cut(s) 213, 245, 301
EcoRI GAATTC 1 cut(s) 366
EcoRII CCWGG 1 cut(s) 74
EcoT22I ATGCAT 1 cut(s) 351
FaeI CATG 1 cut(s) 52
FaiI YATR 4 cut(s) 50, 351, 380, 408
FatI CATG 1 cut(s) 48
Fnu4HI GCNGC 4 cut(s) 194, 197, 200, 314
FokI GGATG 2 cut(s) 389, 443
Fsp4HI GCNGC 4 cut(s) 194, 197, 200, 314
GlaI GCGC 1 cut(s) 329
GluI GCNGC 4 cut(s) 194, 197, 200, 314
HapII CCGG 1 cut(s) 299
HhaI GCGC 1 cut(s) 330
Hin1II CATG 1 cut(s) 52
Hin6I GCGC 1 cut(s) 328
HinP1I GCGC 1 cut(s) 328
HinfI GANTC 3 cut(s) 5, 53, 452
HpaII CCGG 1 cut(s) 299
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 5 cut(s) 218, 268, 278, 451, 457
Hpy188III TCNNGA 2 cut(s) 226, 243
Hpy8I GTNNAC 1 cut(s) 322
Hpy99I CGWCG 1 cut(s) 222
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4IV ACGT 2 cut(s) 172, 220
HpyCH4V TGCA 5 cut(s) 36, 44, 202, 339, 349
HpyF10VI GCNNNNNNNGC 2 cut(s) 199, 336
HpySE526I ACGT 2 cut(s) 172, 220
Hsp92II CATG 1 cut(s) 52
HspAI GCGC 1 cut(s) 328
Kzo9I GATC 3 cut(s) 213, 245, 301
LmnI GCTCC 1 cut(s) 119
Lsp1109I GCAGC 2 cut(s) 183, 186
LweI GCATC 3 cut(s) 336, 411, 432
MaeII ACGT 2 cut(s) 172, 220
MalI GATC 3 cut(s) 215, 247, 303
MboI GATC 3 cut(s) 213, 245, 301
MfeI CAATTG 1 cut(s) 18
MflI RGATCY 2 cut(s) 213, 245
MluCI AATT 3 cut(s) 18, 366, 374
MluI ACGCGT 1 cut(s) 259
MmeI TCCRAC 2 cut(s) 141, 241
MnlI CCTC 8 cut(s) 19, 67, 96, 101, 125, 148, 299, 405
Mph1103I ATGCAT 1 cut(s) 351
MspI CCGG 1 cut(s) 299
MspR9I CCNGG 2 cut(s) 76, 299
MunI CAATTG 1 cut(s) 18
MvaI CCWGG 1 cut(s) 76
MvnI CGCG 2 cut(s) 251, 261
MwoI GCNNNNNNNGC 2 cut(s) 199, 336
NciI CCSGG 1 cut(s) 299
NdeII GATC 3 cut(s) 213, 245, 301
NlaIII CATG 1 cut(s) 52
NlaIV GGNNCC 2 cut(s) 215, 247
NsiI ATGCAT 1 cut(s) 351
PfeI GAWTC 3 cut(s) 5, 53, 452
PfoI TCCNGGA 1 cut(s) 297
PkrI GCNGC 4 cut(s) 195, 198, 201, 315
Ppu21I YACGTR 1 cut(s) 173
PsiI TTATAA 1 cut(s) 380
Psp6I CCWGG 1 cut(s) 74
PspGI CCWGG 1 cut(s) 74
PspN4I GGNNCC 2 cut(s) 215, 247
PstI CTGCAG 1 cut(s) 204
PsuI RGATCY 2 cut(s) 213, 245
RsaI GTAC 2 cut(s) 175, 289
RsaNI GTAC 2 cut(s) 174, 288
SatI GCNGC 4 cut(s) 194, 197, 200, 314
Sau3AI GATC 3 cut(s) 213, 245, 301
ScrFI CCNGG 2 cut(s) 76, 299
SetI ASST 6 cut(s) 17, 65, 116, 175, 223, 345
SfaNI GCATC 3 cut(s) 336, 411, 432
SfcI CTRYAG 1 cut(s) 200
SmlI CTYRAG 2 cut(s) 10, 58
SmoI CTYRAG 2 cut(s) 10, 58
Sse9I AATT 3 cut(s) 18, 366, 374
SsiI CCGC 3 cut(s) 193, 249, 314
StyD4I CCNGG 2 cut(s) 74, 297
TaaI ACNGT 1 cut(s) 232
TaiI ACGT 2 cut(s) 175, 223
TaqI TCGA 1 cut(s) 304
TasI AATT 3 cut(s) 18, 366, 374
TauI GCSGC 2 cut(s) 196, 316
TfiI GAWTC 3 cut(s) 5, 53, 452
TseI GCWGC 2 cut(s) 196, 199
XapI RAATTY 1 cut(s) 366
Zsp2I ATGCAT 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.