gamma-irradiation and mitomycin c induced
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| HATPase_c_3 | PF13589 | 124 - 255 | 1.1e-10 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1506 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 47, 1619 |
| Acc36I | ACCTGC | 2 cut(s) | 1527, 3029 |
| AccB1I | GGYRCC | 1 cut(s) | 3142 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 623, 2071 |
| AccBSI | CCGCTC | 2 cut(s) | 3535, 4698 |
| AccI | GTMKAC | 1 cut(s) | 371 |
| AccII | CGCG | 2 cut(s) | 2600, 3708 |
| AclWI | GGATC | 5 cut(s) | 333, 1311, 2196, 4017, 4217 |
| AcoI | YGGCCR | 3 cut(s) | 1258, 2136, 3322 |
| AcyI | GRCGYC | 1 cut(s) | 2017 |
| AdeI | CACNNNGTG | 1 cut(s) | 1949 |
| AfeI | AGCGCT | 1 cut(s) | 301 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 508, 623, 2071, 4130, 4175 |
| AflII | CTTAAG | 2 cut(s) | 2309, 3098 |
| AflIII | ACRYGT | 2 cut(s) | 318, 3706 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1233 |
| AjnI | CCWGG | 6 cut(s) | 502, 1712, 2184, 2800, 2857, 4385 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 4682, 4714 |
| Alw21I | GWGCWC | 5 cut(s) | 3774, 4045, 4098, 4371, 4746 |
| AlwI | GGATC | 5 cut(s) | 333, 1311, 2196, 4017, 4217 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 4226 |
| Ama87I | CYCGRG | 2 cut(s) | 789, 2103 |
| Aor51HI | AGCGCT | 1 cut(s) | 301 |
| AoxI | GGCC | 9 cut(s) | 499, 1258, 1853, 2136, 3019, 3273, 3322, 4166, 4324 |
| ApeKI | GCWGC | 9 cut(s) | 1350, 2703, 3383, 3550, 3848, 3851, 4034, 4403, 4758 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2257, 2289 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1797, 3300 |
| AspLEI | GCGC | 1 cut(s) | 302 |
| AspS9I | GGNCC | 7 cut(s) | 500, 644, 1040, 1710, 2297, 2473, 2804 |
| AsuC2I | CCSGG | 3 cut(s) | 2151, 2339, 4508 |
| AsuHPI | GGTGA | 9 cut(s) | 557, 1016, 1619, 1844, 1937, 2614, 3522, 4190, 4324 |
| AsuII | TTCGAA | 1 cut(s) | 2368 |
| AsuNHI | GCTAGC | 1 cut(s) | 4754 |
| AvaI | CYCGRG | 2 cut(s) | 789, 2103 |
| AvaII | GGWCC | 6 cut(s) | 644, 1040, 1710, 2297, 2473, 2804 |
| BaeGI | GKGCMC | 2 cut(s) | 2978, 4677 |
| BalI | TGGCCA | 1 cut(s) | 2138 |
| BanI | GGYRCC | 1 cut(s) | 3142 |
| BanII | GRGCYC | 3 cut(s) | 3774, 4371, 4746 |
| BauI | CACGAG | 1 cut(s) | 4407 |
| BbsI | GAAGAC | 7 cut(s) | 281, 770, 950, 1415, 1617, 3061, 4164 |
| Bbv12I | GWGCWC | 5 cut(s) | 3774, 4045, 4098, 4371, 4746 |
| BbvCI | CCTCAGC | 1 cut(s) | 2253 |
| BbvI | GCAGC | 9 cut(s) | 1337, 2715, 3370, 3562, 3838, 3860, 4021, 4390, 4770 |
| BceAI | ACGGC | 1 cut(s) | 404 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1830, 1864 |
| BciT130I | CCWGG | 6 cut(s) | 504, 1714, 2186, 2802, 2859, 4387 |
| BciVI | GTATCC | 1 cut(s) | 1900 |
| BclI | TGATCA | 5 cut(s) | 2488, 2992, 3457, 4566, 4596 |
| BcnI | CCSGG | 3 cut(s) | 2151, 2339, 4508 |
| BfaI | CTAG | 3 cut(s) | 1418, 3873, 4755 |
| BfmI | CTRYAG | 9 cut(s) | 531, 648, 2541, 2810, 3429, 3846, 4018, 4189, 4320 |
| BfoI | RGCGCY | 1 cut(s) | 303 |
| BfrI | CTTAAG | 2 cut(s) | 2309, 3098 |
| BfuAI | ACCTGC | 2 cut(s) | 1527, 3029 |
| BfuI | GTATCC | 1 cut(s) | 1900 |
| BglII | AGATCT | 1 cut(s) | 2024 |
| Bme1390I | CCNGG | 9 cut(s) | 504, 1714, 2151, 2186, 2339, 2802, 2859, 4387, 4508 |
| Bme18I | GGWCC | 6 cut(s) | 644, 1040, 1710, 2297, 2473, 2804 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1233 |
| BmeT110I | CYCGRG | 2 cut(s) | 789, 2103 |
| BmgT120I | GGNCC | 7 cut(s) | 500, 644, 1040, 1710, 2297, 2473, 2804 |
| BmiI | GGNNCC | 9 cut(s) | 786, 2474, 2784, 2856, 3144, 3426, 3573, 4248, 4491 |
| BmrFI | CCNGG | 9 cut(s) | 504, 1714, 2151, 2186, 2339, 2802, 2859, 4387, 4508 |
| BmrI | ACTGGG | 1 cut(s) | 2981 |
| BmtI | GCTAGC | 1 cut(s) | 4758 |
| BmuI | ACTGGG | 1 cut(s) | 2981 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2302 |
| BpiI | GAAGAC | 7 cut(s) | 281, 770, 950, 1415, 1617, 3061, 4164 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 772, 804 |
| BpmI | CTGGAG | 5 cut(s) | 314, 863, 1089, 2106, 3698 |
| Bpu10I | CCTNAGC | 2 cut(s) | 72, 2253 |
| Bpu14I | TTCGAA | 1 cut(s) | 2368 |
| BpuEI | CTTGAG | 2 cut(s) | 1493, 4067 |
| BpuMI | CCSGG | 3 cut(s) | 2151, 2339, 4508 |
| Bsa29I | ATCGAT | 1 cut(s) | 3815 |
| BsaAI | YACGTR | 1 cut(s) | 2984 |
| BsaBI | GATNNNNATC | 1 cut(s) | 4296 |
| BsaHI | GRCGYC | 1 cut(s) | 2017 |
| BsaI | GGTCTC | 4 cut(s) | 1220, 1817, 4114, 4337 |
| BsaJI | CCNNGG | 7 cut(s) | 502, 503, 2457, 3013, 3503, 4327, 4386 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1740, 1770, 4682, 4712 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 508, 623, 2071, 4130, 4175 |
| Bse118I | RCCGGY | 1 cut(s) | 3275 |
| Bse3DI | GCAATG | 2 cut(s) | 1042, 2491 |
| Bse8I | GATNNNNATC | 1 cut(s) | 4296 |
| BseBI | CCWGG | 6 cut(s) | 504, 1714, 2186, 2802, 2859, 4387 |
| BseCI | ATCGAT | 1 cut(s) | 3815 |
| BseDI | CCNNGG | 7 cut(s) | 502, 503, 2457, 3013, 3503, 4327, 4386 |
| BseJI | GATNNNNATC | 1 cut(s) | 4296 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 508, 623, 2071, 4130, 4175 |
| BseMI | GCAATG | 2 cut(s) | 1042, 2491 |
| BseRI | GAGGAG | 2 cut(s) | 1335, 4064 |
| BseSI | GKGCMC | 2 cut(s) | 2978, 4677 |
| BseXI | GCAGC | 9 cut(s) | 1337, 2715, 3370, 3562, 3838, 3860, 4021, 4390, 4770 |
| BsgI | GTGCAG | 1 cut(s) | 3569 |
| Bsh1236I | CGCG | 2 cut(s) | 2600, 3708 |
| Bsh1285I | CGRYCG | 1 cut(s) | 572 |
| BshFI | GGCC | 9 cut(s) | 501, 1260, 1855, 2138, 3021, 3275, 3324, 4168, 4326 |
| BshNI | GGYRCC | 1 cut(s) | 3142 |
| BshVI | ATCGAT | 1 cut(s) | 3815 |
| BsiEI | CGRYCG | 1 cut(s) | 572 |
| BsiHKAI | GWGCWC | 5 cut(s) | 3774, 4045, 4098, 4371, 4746 |
| BsiHKCI | CYCGRG | 2 cut(s) | 789, 2103 |
| BsiSI | CCGG | 5 cut(s) | 2151, 2339, 3276, 3338, 4508 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 508, 623, 2071, 4130, 4175 |
| BsmBI | CGTCTC | 2 cut(s) | 2005, 2238 |
| BsmI | GAATGC | 2 cut(s) | 86, 1027 |
| BsnI | GGCC | 9 cut(s) | 501, 1260, 1855, 2138, 3021, 3275, 3324, 4168, 4326 |
| Bso31I | GGTCTC | 4 cut(s) | 1220, 1817, 4114, 4337 |
| BsoBI | CYCGRG | 2 cut(s) | 789, 2103 |
| Bsp119I | TTCGAA | 1 cut(s) | 2368 |
| Bsp1286I | GDGCHC | 7 cut(s) | 2978, 3774, 4045, 4098, 4371, 4677, 4746 |
| Bsp1407I | TGTACA | 2 cut(s) | 2753, 4057 |
| Bsp19I | CCATGG | 1 cut(s) | 4327 |
| BspANI | GGCC | 9 cut(s) | 501, 1260, 1855, 2138, 3021, 3275, 3324, 4168, 4326 |
| BspDI | ATCGAT | 1 cut(s) | 3815 |
| BspFNI | CGCG | 2 cut(s) | 2600, 3708 |
| BspHI | TCATGA | 1 cut(s) | 3232 |
| BspLI | GGNNCC | 9 cut(s) | 786, 2474, 2784, 2856, 3144, 3426, 3573, 4248, 4491 |
| BspMAI | CTGCAG | 3 cut(s) | 3850, 4193, 4324 |
| BspMI | ACCTGC | 2 cut(s) | 1527, 3029 |
| BspOI | GCTAGC | 1 cut(s) | 4758 |
| BspPI | GGATC | 5 cut(s) | 333, 1311, 2196, 4017, 4217 |
| BspT104I | TTCGAA | 1 cut(s) | 2368 |
| BspT107I | GGYRCC | 1 cut(s) | 3142 |
| BspTI | CTTAAG | 2 cut(s) | 2309, 3098 |
| BspTNI | GGTCTC | 4 cut(s) | 1220, 1817, 4114, 4337 |
| BsrBI | CCGCTC | 2 cut(s) | 3535, 4698 |
| BsrDI | GCAATG | 2 cut(s) | 1042, 2491 |
| BsrFI | RCCGGY | 1 cut(s) | 3275 |
| BsrGI | TGTACA | 2 cut(s) | 2753, 4057 |
| BssAI | RCCGGY | 1 cut(s) | 3275 |
| BssECI | CCNNGG | 7 cut(s) | 502, 503, 2457, 3013, 3503, 4327, 4386 |
| BssNAI | GTATAC | 1 cut(s) | 372 |
| BssNI | GRCGYC | 1 cut(s) | 2017 |
| BssSI | CACGAG | 1 cut(s) | 4407 |
| BssT1I | CCWWGG | 3 cut(s) | 2457, 3013, 4327 |
| Bst1107I | GTATAC | 1 cut(s) | 372 |
| Bst2BI | CACGAG | 1 cut(s) | 4407 |
| Bst2UI | CCWGG | 6 cut(s) | 504, 1714, 2186, 2802, 2859, 4387 |
| Bst4CI | ACNGT | 9 cut(s) | 1604, 2502, 2680, 2818, 2980, 3334, 3949, 4312, 4345 |
| Bst6I | CTCTTC | 2 cut(s) | 3357, 3885 |
| BstACI | GRCGYC | 1 cut(s) | 2017 |
| BstAFI | CTTAAG | 2 cut(s) | 2309, 3098 |
| BstAUI | TGTACA | 2 cut(s) | 2753, 4057 |
| BstBAI | YACGTR | 1 cut(s) | 2984 |
| BstBI | TTCGAA | 1 cut(s) | 2368 |
| BstDSI | CCRYGG | 2 cut(s) | 3503, 4327 |
| BstFNI | CGCG | 2 cut(s) | 2600, 3708 |
| BstH2I | RGCGCY | 1 cut(s) | 303 |
| BstHHI | GCGC | 1 cut(s) | 302 |
| BstMCI | CGRYCG | 1 cut(s) | 572 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 1143, 4040, 4409 |
| BstNI | CCWGG | 6 cut(s) | 504, 1714, 2186, 2802, 2859, 4387 |
| BstNSI | RCATGY | 5 cut(s) | 322, 1577, 1755, 2550, 4094 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2302 |
| BstSCI | CCNGG | 9 cut(s) | 502, 1712, 2149, 2184, 2337, 2800, 2857, 4385, 4506 |
| BstSFI | CTRYAG | 9 cut(s) | 531, 648, 2541, 2810, 3429, 3846, 4018, 4189, 4320 |
| BstSLI | GKGCMC | 2 cut(s) | 2978, 4677 |
| BstSNI | TACGTA | 1 cut(s) | 2984 |
| BstUI | CGCG | 2 cut(s) | 2600, 3708 |
| BstV1I | GCAGC | 9 cut(s) | 1337, 2715, 3370, 3562, 3838, 3860, 4021, 4390, 4770 |
| BstV2I | GAAGAC | 7 cut(s) | 281, 770, 950, 1415, 1617, 3061, 4164 |
| BstX2I | RGATCY | 5 cut(s) | 325, 1303, 2024, 4022, 4222 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 664 |
| BstYI | RGATCY | 5 cut(s) | 325, 1303, 2024, 4022, 4222 |
| BstZ17I | GTATAC | 1 cut(s) | 372 |
| Bsu15I | ATCGAT | 1 cut(s) | 3815 |
| BsuI | GTATCC | 1 cut(s) | 1900 |
| BsuRI | GGCC | 9 cut(s) | 501, 1260, 1855, 2138, 3021, 3275, 3324, 4168, 4326 |
| BsuTUI | ATCGAT | 1 cut(s) | 3815 |
| BtgI | CCRYGG | 2 cut(s) | 3503, 4327 |
| BtgZI | GCGATG | 1 cut(s) | 3378 |
| BtsI | GCAGTG | 2 cut(s) | 3843, 4198 |
| BveI | ACCTGC | 2 cut(s) | 1527, 3029 |
| CaiI | CAGNNNCTG | 1 cut(s) | 4226 |
| CciI | TCATGA | 1 cut(s) | 3232 |
| CfoI | GCGC | 1 cut(s) | 302 |
| Cfr10I | RCCGGY | 1 cut(s) | 3275 |
| Cfr13I | GGNCC | 7 cut(s) | 500, 644, 1040, 1710, 2297, 2473, 2804 |
| ClaI | ATCGAT | 1 cut(s) | 3815 |
| CseI | GACGC | 2 cut(s) | 37, 2025 |
| DraIII | CACNNNGTG | 1 cut(s) | 1949 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 47, 1619 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1233 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 47, 1619 |
| EaeI | YGGCCR | 3 cut(s) | 1258, 2136, 3322 |
| Eam1104I | CTCTTC | 2 cut(s) | 3357, 3885 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1233 |
| EarI | CTCTTC | 2 cut(s) | 3357, 3885 |
| Ecl136II | GAGCTC | 3 cut(s) | 3772, 4369, 4744 |
| Eco105I | TACGTA | 1 cut(s) | 2984 |
| Eco130I | CCWWGG | 3 cut(s) | 2457, 3013, 4327 |
| Eco147I | AGGCCT | 2 cut(s) | 1855, 4168 |
| Eco24I | GRGCYC | 3 cut(s) | 3774, 4371, 4746 |
| Eco31I | GGTCTC | 4 cut(s) | 1220, 1817, 4114, 4337 |
| Eco32I | GATATC | 1 cut(s) | 4183 |
| Eco47I | GGWCC | 6 cut(s) | 644, 1040, 1710, 2297, 2473, 2804 |
| Eco47III | AGCGCT | 1 cut(s) | 301 |
| Eco53kI | GAGCTC | 3 cut(s) | 3772, 4369, 4744 |
| Eco88I | CYCGRG | 2 cut(s) | 789, 2103 |
| EcoICRI | GAGCTC | 3 cut(s) | 3772, 4369, 4744 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1710, 2297, 2473 |
| EcoRI | GAATTC | 1 cut(s) | 2316 |
| EcoRII | CCWGG | 6 cut(s) | 502, 1712, 2184, 2800, 2857, 4385 |
| EcoRV | GATATC | 1 cut(s) | 4183 |
| EcoT14I | CCWWGG | 3 cut(s) | 2457, 3013, 4327 |
| EcoT22I | ATGCAT | 3 cut(s) | 1575, 3008, 4092 |
| EcoT38I | GRGCYC | 3 cut(s) | 3774, 4371, 4746 |
| ErhI | CCWWGG | 3 cut(s) | 2457, 3013, 4327 |
| Esp3I | CGTCTC | 2 cut(s) | 2005, 2238 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 273, 305 |
| FauNDI | CATATG | 3 cut(s) | 2688, 2731, 3258 |
| FbaI | TGATCA | 5 cut(s) | 2488, 2992, 3457, 4566, 4596 |
| FblI | GTMKAC | 1 cut(s) | 371 |
| FriOI | GRGCYC | 3 cut(s) | 3774, 4371, 4746 |
| FspBI | CTAG | 3 cut(s) | 1418, 3873, 4755 |
| GlaI | GCGC | 1 cut(s) | 301 |
| GsuI | CTGGAG | 5 cut(s) | 314, 863, 1089, 2106, 3698 |
| HaeII | RGCGCY | 1 cut(s) | 303 |
| HaeIII | GGCC | 9 cut(s) | 501, 1260, 1855, 2138, 3021, 3275, 3324, 4168, 4326 |
| HapII | CCGG | 5 cut(s) | 2151, 2339, 3276, 3338, 4508 |
| HgaI | GACGC | 2 cut(s) | 37, 2025 |
| HhaI | GCGC | 1 cut(s) | 302 |
| Hin1I | GRCGYC | 1 cut(s) | 2017 |
| Hin6I | GCGC | 1 cut(s) | 300 |
| HinP1I | GCGC | 1 cut(s) | 300 |
| HincII | GTYRAC | 3 cut(s) | 469, 3199, 4590 |
| HindII | GTYRAC | 3 cut(s) | 469, 3199, 4590 |
| HindIII | AAGCTT | 1 cut(s) | 823 |
| HpaII | CCGG | 5 cut(s) | 2151, 2339, 3276, 3338, 4508 |
| HphI | GGTGA | 9 cut(s) | 557, 1016, 1619, 1844, 1937, 2614, 3522, 4190, 4324 |
| Hpy166II | GTNNAC | 9 cut(s) | 372, 469, 599, 644, 715, 2270, 3199, 4103, 4590 |
| Hpy8I | GTNNAC | 9 cut(s) | 372, 469, 599, 644, 715, 2270, 3199, 4103, 4590 |
| Hpy99I | CGWCG | 1 cut(s) | 2019 |
| HpyCH4III | ACNGT | 9 cut(s) | 1604, 2502, 2680, 2818, 2980, 3334, 3949, 4312, 4345 |
| HpyCH4IV | ACGT | 4 cut(s) | 123, 2232, 2272, 2983 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 1143, 4040, 4409 |
| HpySE526I | ACGT | 4 cut(s) | 123, 2232, 2272, 2983 |
| Hsp92I | GRCGYC | 1 cut(s) | 2017 |
| HspAI | GCGC | 1 cut(s) | 300 |
| Ksp22I | TGATCA | 5 cut(s) | 2488, 2992, 3457, 4566, 4596 |
| LmnI | GCTCC | 8 cut(s) | 1748, 3445, 3540, 3583, 4252, 4374, 4489, 4703 |
| Lsp1109I | GCAGC | 9 cut(s) | 1337, 2715, 3370, 3562, 3838, 3860, 4021, 4390, 4770 |
| MaeI | CTAG | 3 cut(s) | 1418, 3873, 4755 |
| MaeII | ACGT | 4 cut(s) | 123, 2232, 2272, 2983 |
| MbiI | CCGCTC | 2 cut(s) | 3535, 4698 |
| MfeI | CAATTG | 4 cut(s) | 130, 1788, 2037, 4600 |
| MflI | RGATCY | 5 cut(s) | 325, 1303, 2024, 4022, 4222 |
| MhlI | GDGCHC | 7 cut(s) | 2978, 3774, 4045, 4098, 4371, 4677, 4746 |
| MlsI | TGGCCA | 1 cut(s) | 2138 |
| MluI | ACGCGT | 1 cut(s) | 3706 |
| MluNI | TGGCCA | 1 cut(s) | 2138 |
| MlyI | GAGTC | 4 cut(s) | 757, 2417, 3536, 3551 |
| MmeI | TCCRAC | 8 cut(s) | 1421, 2052, 2391, 2443, 2691, 3099, 3691, 4665 |
| Mox20I | TGGCCA | 1 cut(s) | 2138 |
| Mph1103I | ATGCAT | 3 cut(s) | 1575, 3008, 4092 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1797, 3300 |
| MscI | TGGCCA | 1 cut(s) | 2138 |
| MslI | CAYNNNNRTG | 3 cut(s) | 456, 2403, 3414 |
| Msp20I | TGGCCA | 1 cut(s) | 2138 |
| MspA1I | CMGCKG | 2 cut(s) | 3327, 3851 |
| MspCI | CTTAAG | 2 cut(s) | 2309, 3098 |
| MspI | CCGG | 5 cut(s) | 2151, 2339, 3276, 3338, 4508 |
| MspR9I | CCNGG | 9 cut(s) | 504, 1714, 2151, 2186, 2339, 2802, 2859, 4387, 4508 |
| MunI | CAATTG | 4 cut(s) | 130, 1788, 2037, 4600 |
| Mva1269I | GAATGC | 2 cut(s) | 86, 1027 |
| MvaI | CCWGG | 6 cut(s) | 504, 1714, 2186, 2802, 2859, 4387 |
| MvnI | CGCG | 2 cut(s) | 2600, 3708 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 1143, 4040, 4409 |
| NciI | CCSGG | 3 cut(s) | 2151, 2339, 4508 |
| NcoI | CCATGG | 1 cut(s) | 4327 |
| NdeI | CATATG | 3 cut(s) | 2688, 2731, 3258 |
| NheI | GCTAGC | 1 cut(s) | 4754 |
| NlaIV | GGNNCC | 9 cut(s) | 786, 2474, 2784, 2856, 3144, 3426, 3573, 4248, 4491 |
| NmuCI | GTSAC | 7 cut(s) | 263, 2304, 3245, 3528, 4193, 4312, 4618 |
| NsiI | ATGCAT | 3 cut(s) | 1575, 3008, 4092 |
| NspI | RCATGY | 5 cut(s) | 322, 1577, 1755, 2550, 4094 |
| NspV | TTCGAA | 1 cut(s) | 2368 |
| PaeI | GCATGC | 1 cut(s) | 1577 |
| PaeR7I | CTCGAG | 2 cut(s) | 789, 2103 |
| PagI | TCATGA | 1 cut(s) | 3232 |
| PasI | CCCWGGG | 1 cut(s) | 503 |
| PceI | AGGCCT | 2 cut(s) | 1855, 4168 |
| PciI | ACATGT | 1 cut(s) | 318 |
| PctI | GAATGC | 2 cut(s) | 86, 1027 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1797, 3300 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 623, 2071 |
| PfoI | TCCNGGA | 1 cut(s) | 2800 |
| Ple19I | CGATCG | 1 cut(s) | 572 |
| PleI | GAGTC | 4 cut(s) | 756, 2416, 3535, 3550 |
| PpsI | GAGTC | 4 cut(s) | 756, 2416, 3535, 3550 |
| Ppu21I | YACGTR | 1 cut(s) | 2984 |
| PpuMI | RGGWCCY | 3 cut(s) | 1710, 2297, 2473 |
| PscI | ACATGT | 1 cut(s) | 318 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2302 |
| PsiI | TTATAA | 1 cut(s) | 1506 |
| Psp124BI | GAGCTC | 3 cut(s) | 3774, 4371, 4746 |
| Psp5II | RGGWCCY | 3 cut(s) | 1710, 2297, 2473 |
| Psp6I | CCWGG | 6 cut(s) | 502, 1712, 2184, 2800, 2857, 4385 |
| PspGI | CCWGG | 6 cut(s) | 502, 1712, 2184, 2800, 2857, 4385 |
| PspN4I | GGNNCC | 9 cut(s) | 786, 2474, 2784, 2856, 3144, 3426, 3573, 4248, 4491 |
| PspPI | GGNCC | 7 cut(s) | 500, 644, 1040, 1710, 2297, 2473, 2804 |
| PspPPI | RGGWCCY | 3 cut(s) | 1710, 2297, 2473 |
| PspXI | VCTCGAGB | 1 cut(s) | 2103 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 4095, 4127 |
| PstI | CTGCAG | 3 cut(s) | 3850, 4193, 4324 |
| PstNI | CAGNNNCTG | 1 cut(s) | 4226 |
| PsuI | RGATCY | 5 cut(s) | 325, 1303, 2024, 4022, 4222 |
| PvuI | CGATCG | 1 cut(s) | 572 |
| PvuII | CAGCTG | 1 cut(s) | 3851 |
| RseI | CAYNNNNRTG | 3 cut(s) | 456, 2403, 3414 |
| SacI | GAGCTC | 3 cut(s) | 3774, 4371, 4746 |
| Sau96I | GGNCC | 7 cut(s) | 500, 644, 1040, 1710, 2297, 2473, 2804 |
| SchI | GAGTC | 4 cut(s) | 757, 2417, 3536, 3551 |
| ScrFI | CCNGG | 9 cut(s) | 504, 1714, 2151, 2186, 2339, 2802, 2859, 4387, 4508 |
| SduI | GDGCHC | 7 cut(s) | 2978, 3774, 4045, 4098, 4371, 4677, 4746 |
| SfcI | CTRYAG | 9 cut(s) | 531, 648, 2541, 2810, 3429, 3846, 4018, 4189, 4320 |
| Sfr274I | CTCGAG | 2 cut(s) | 789, 2103 |
| SfuI | TTCGAA | 1 cut(s) | 2368 |
| SinI | GGWCC | 6 cut(s) | 644, 1040, 1710, 2297, 2473, 2804 |
| SlaI | CTCGAG | 2 cut(s) | 789, 2103 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 456, 2403, 3414 |
| SmlI | CTYRAG | 6 cut(s) | 789, 1472, 2103, 2309, 3098, 4046 |
| SmoI | CTYRAG | 6 cut(s) | 789, 1472, 2103, 2309, 3098, 4046 |
| SnaBI | TACGTA | 1 cut(s) | 2984 |
| SphI | GCATGC | 1 cut(s) | 1577 |
| SseBI | AGGCCT | 2 cut(s) | 1855, 4168 |
| SspI | AATATT | 1 cut(s) | 1796 |
| SspMI | CTAG | 3 cut(s) | 1418, 3873, 4755 |
| SstI | GAGCTC | 3 cut(s) | 3774, 4371, 4746 |
| StuI | AGGCCT | 2 cut(s) | 1855, 4168 |
| StyD4I | CCNGG | 9 cut(s) | 502, 1712, 2149, 2184, 2337, 2800, 2857, 4385, 4506 |
| StyI | CCWWGG | 3 cut(s) | 2457, 3013, 4327 |
| TaaI | ACNGT | 9 cut(s) | 1604, 2502, 2680, 2818, 2980, 3334, 3949, 4312, 4345 |
| TaiI | ACGT | 4 cut(s) | 126, 2235, 2275, 2986 |
| TaqII | GACCGA | 1 cut(s) | 741 |
| TatI | WGTACW | 6 cut(s) | 1495, 2196, 2753, 3329, 3863, 4057 |
| TauI | GCSGC | 3 cut(s) | 1263, 3161, 3327 |
| TseFI | GTSAC | 7 cut(s) | 263, 2304, 3245, 3528, 4193, 4312, 4618 |
| TseI | GCWGC | 9 cut(s) | 1350, 2703, 3383, 3550, 3848, 3851, 4034, 4403, 4758 |
| Tsp45I | GTSAC | 7 cut(s) | 263, 2304, 3245, 3528, 4193, 4312, 4618 |
| TspGWI | ACGGA | 5 cut(s) | 528, 594, 834, 2711, 3492 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 623, 2071 |
| Vha464I | CTTAAG | 2 cut(s) | 2309, 3098 |
| VpaK11BI | GGWCC | 6 cut(s) | 644, 1040, 1710, 2297, 2473, 2804 |
| XbaI | TCTAGA | 1 cut(s) | 3872 |
| XceI | RCATGY | 5 cut(s) | 322, 1577, 1755, 2550, 4094 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1823 |
| XhoI | CTCGAG | 2 cut(s) | 789, 2103 |
| XmiI | GTMKAC | 1 cut(s) | 371 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1797, 3300 |
| XspI | CTAG | 3 cut(s) | 1418, 3873, 4755 |
| Zsp2I | ATGCAT | 3 cut(s) | 1575, 3008, 4092 |