Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001133

Physical Location & Seq

Genomic Coordinates Reverse (-)

3683269 .. 3699321

Gene Structure 16053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG025800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGCTCGGAGTTGACCAGTGCCCAACACGCAACTTCATGCTCCAACTACTAAAACAAAGTCTGCATAACTCTTCTATATCATCCTCGAAACTTGAGAAGAATCTGAGTTTTTATCTTTCCTTCTGTAATGCAAAATTCGCTGATCATCATGGATGCATTGACCTTGGTGGCCTCTTCAAAGTGACTGCAGGTTATGAGACACGTAGTATGTACTTTTACTTGACAGCATGCATTGATAAAAATGTGAATACCAGGAATATTGTCCGCAGATCAAAAGCTGATCATCATGGATGCATTGACCTTGGTGGCCTCTTCAAACTGACTGCAGGTTATGAGAAAAGTGTATCAATTTCTGTCTACTCCAACAATGATGTTTTACTGAATCTTCAGTCTCAAACTGAGAAAAGGGTGTTGATAATTTCATCAAAGGTGCCTGACGTTTGCGTGGTTGGTACTCAAATGGAAAATATGGTTTTTGAAATTGTTAGCTCTGACGGTGTTGTTGATGATACTATTCATCATGACAAGAAAAGTGGCCAATTACATATAGCTACAATAATGGCCGGTTCATCATTCATGGAGGAATCCCTTCGATACACATTCAAGCATGGACGCTGTACAATACCAAGACCCCCACACCCTACCTCGAAGAGTAGGGACTTATTATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c_3

Protein Analysis

223

Amino Acids

24.96

Weight (kDa)

8.63

Isoelectric Point (pI)

41.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24275 AT5G24275 AT5G24275 AT5G24275 AT5G24280 AT5G24280 AT5G24280
fragaria_vesca	FvH4_7g31550 FvH4_7g31550 FvH4_7g32260
malus_domestica	MD07G1288100.v1.1
prunus_persica	Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1
pyrus_communis	pycom07g26090
rosa_chinensis	RchiOBHm_Chr1g0380531 RchiOBHm_Chr1g0381531
rosa_laevigata	RLG00000026287
rosa_multiflora	Rmu_co8450373.1_g000001 Rmu_sc0000701.1_g000020 Rmu_sc0002045.1_g000020 Rmu_sc0010633.1_g000011 Rmu_ssc0000015.1_g000008
rosa_roxburghii	Rroxscaffold_4G00279220
rosa_rugosa	Rorug01G0422200 Rorug01G0422300 Rorug06G0084200
rosa_samantha	Rh1AG446800 Rh1BG402100 Rh1CG416300 Rh1CG424300 Rh1DG432300 Rh2DG318300 Rh3BG122000 Rh5AG085500 Rh5AG170300 Rh5BG265400 Rh6AG200100 Rh6AG200300 Rh6AG200400 Rh6BG025800 Rh6BG203500 Rh6BG203600 Rh6BG203800 Rh6CG203700 Rh6CG203800 Rh6CG204000 Rh6DG195200
rosa_wichuraiana	Rw1G038870 Rw1G039500 Rw6G017380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	179, 317
AccB1I	GGYRCC	1 cut(s)	430
AccI	GTMKAC	1 cut(s)	357
AciI	CCGC	1 cut(s)	265
AcoI	YGGCCR	2 cut(s)	535, 561
AcsI	RAATTY	1 cut(s)	134
AcuI	CTGAAG	1 cut(s)	371
AfaI	GTAC	3 cut(s)	212, 454, 619
AflIII	ACRYGT	1 cut(s)	200
AgsI	TTSAA	4 cut(s)	178, 316, 479, 604
AjnI	CCWGG	1 cut(s)	251
AluBI	AGCT	3 cut(s)	278, 489, 551
AluI	AGCT	3 cut(s)	278, 489, 551
Alw26I	GTCTC	2 cut(s)	191, 396
AoxI	GGCC	4 cut(s)	169, 307, 535, 561
ApoI	RAATTY	1 cut(s)	134
Asp700I	GAANNNNTTC	1 cut(s)	588
BaeGI	GKGCMC	1 cut(s)	23
BalI	TGGCCA	1 cut(s)	537
BanI	GGYRCC	1 cut(s)	430
BciT130I	CCWGG	1 cut(s)	253
BclI	TGATCA	2 cut(s)	142, 280
BcoDI	GTCTC	2 cut(s)	191, 396
BfmI	CTRYAG	2 cut(s)	186, 324
BfuAI	ACCTGC	2 cut(s)	179, 317
Bme1390I	CCNGG	1 cut(s)	253
BmiI	GGNNCC	1 cut(s)	432
BmrFI	CCNGG	1 cut(s)	253
BmsI	GCATC	2 cut(s)	143, 281
BpuEI	CTTGAG	1 cut(s)	113
BsaAI	YACGTR	1 cut(s)	203
BsaJI	CCNNGG	2 cut(s)	163, 301
Bse118I	RCCGGY	1 cut(s)	563
Bse1I	ACTGG	1 cut(s)	16
BseBI	CCWGG	1 cut(s)	253
BseDI	CCNNGG	2 cut(s)	163, 301
BseGI	GGATG	3 cut(s)	80, 158, 296
BseMII	CTCAG	2 cut(s)	95, 390
BseNI	ACTGG	1 cut(s)	16
BseSI	GKGCMC	1 cut(s)	23
BshFI	GGCC	4 cut(s)	171, 309, 537, 563
BshNI	GGYRCC	1 cut(s)	430
BsiSI	CCGG	1 cut(s)	564
BsmAI	GTCTC	2 cut(s)	191, 396
BsnI	GGCC	4 cut(s)	171, 309, 537, 563
Bsp1286I	GDGCHC	1 cut(s)	23
Bsp1407I	TGTACA	1 cut(s)	617
Bsp143I	GATC	3 cut(s)	142, 269, 280
BspACI	CCGC	1 cut(s)	265
BspANI	GGCC	4 cut(s)	171, 309, 537, 563
BspCNI	CTCAG	2 cut(s)	96, 391
BspHI	TCATGA	1 cut(s)	520
BspLI	GGNNCC	1 cut(s)	432
BspMAI	CTGCAG	2 cut(s)	190, 328
BspMI	ACCTGC	2 cut(s)	179, 317
BspT107I	GGYRCC	1 cut(s)	430
BsrFI	RCCGGY	1 cut(s)	563
BsrGI	TGTACA	1 cut(s)	617
BsrI	ACTGG	1 cut(s)	16
BssAI	RCCGGY	1 cut(s)	563
BssECI	CCNNGG	2 cut(s)	163, 301
BssMI	GATC	3 cut(s)	142, 269, 280
BssT1I	CCWWGG	2 cut(s)	163, 301
Bst2UI	CCWGG	1 cut(s)	253
Bst4CI	ACNGT	1 cut(s)	497
Bst6I	CTCTTC	4 cut(s)	76, 179, 317, 644
BstAUI	TGTACA	1 cut(s)	617
BstBAI	YACGTR	1 cut(s)	203
BstC8I	GCNNGC	1 cut(s)	229
BstDEI	CTNAG	2 cut(s)	104, 399
BstF5I	GGATG	3 cut(s)	80, 158, 296
BstKTI	GATC	3 cut(s)	145, 272, 283
BstMAI	GTCTC	2 cut(s)	191, 396
BstMBI	GATC	3 cut(s)	142, 269, 280
BstMWI	GCNNNNNNNGC	2 cut(s)	27, 137
BstNI	CCWGG	1 cut(s)	253
BstNSI	RCATGY	1 cut(s)	231
BstSCI	CCNGG	1 cut(s)	251
BstSFI	CTRYAG	2 cut(s)	186, 324
BstSLI	GKGCMC	1 cut(s)	23
BsuRI	GGCC	4 cut(s)	171, 309, 537, 563
BtsCI	GGATG	3 cut(s)	80, 158, 296
BtsIMutI	CAGTG	1 cut(s)	23
BveI	ACCTGC	2 cut(s)	179, 317
Cac8I	GCNNGC	1 cut(s)	229
CciI	TCATGA	1 cut(s)	520
Cfr10I	RCCGGY	1 cut(s)	563
CseI	GACGC	1 cut(s)	621
Csp6I	GTAC	3 cut(s)	211, 453, 618
CspCI	CAANNNNNGTGG	2 cut(s)	514, 549
CviAII	CATG	7 cut(s)	37, 149, 228, 287, 521, 577, 608
CviJI	RGCY	7 cut(s)	171, 278, 309, 489, 537, 551, 563
CviKI_1	RGCY	7 cut(s)	171, 278, 309, 489, 537, 551, 563
CviQI	GTAC	3 cut(s)	211, 453, 618
DdeI	CTNAG	2 cut(s)	104, 399
DpnI	GATC	3 cut(s)	144, 271, 282
DpnII	GATC	3 cut(s)	142, 269, 280
EaeI	YGGCCR	2 cut(s)	535, 561
Eam1104I	CTCTTC	4 cut(s)	76, 179, 317, 644
EarI	CTCTTC	4 cut(s)	76, 179, 317, 644
Eco130I	CCWWGG	2 cut(s)	163, 301
Eco57I	CTGAAG	1 cut(s)	371
EcoRII	CCWGG	1 cut(s)	251
EcoT14I	CCWWGG	2 cut(s)	163, 301
EcoT22I	ATGCAT	3 cut(s)	158, 233, 296
ErhI	CCWWGG	2 cut(s)	163, 301
FaeI	CATG	7 cut(s)	40, 152, 231, 290, 524, 580, 611
FatI	CATG	7 cut(s)	36, 148, 227, 286, 520, 576, 607
FbaI	TGATCA	2 cut(s)	142, 280
FblI	GTMKAC	1 cut(s)	357
FokI	GGATG	3 cut(s)	67, 165, 303
HaeIII	GGCC	4 cut(s)	171, 309, 537, 563
HapII	CCGG	1 cut(s)	564
HgaI	GACGC	1 cut(s)	621
Hin1II	CATG	7 cut(s)	40, 152, 231, 290, 524, 580, 611
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HinfI	GANTC	3 cut(s)	100, 382, 584
HpaII	CCGG	1 cut(s)	564
Hpy166II	GTNNAC	2 cut(s)	13, 358
Hpy188I	TCNGA	3 cut(s)	8, 105, 493
Hpy188III	TCNNGA	1 cut(s)	521
Hpy8I	GTNNAC	2 cut(s)	13, 358
HpyAV	CCTTC	2 cut(s)	130, 599
HpyCH4III	ACNGT	1 cut(s)	497
HpyCH4IV	ACGT	2 cut(s)	202, 438
HpyCH4V	TGCA	7 cut(s)	64, 131, 156, 188, 231, 294, 326
HpyF10VI	GCNNNNNNNGC	2 cut(s)	27, 137
HpyF3I	CTNAG	2 cut(s)	104, 399
HpySE526I	ACGT	2 cut(s)	202, 438
Hsp92II	CATG	7 cut(s)	40, 152, 231, 290, 524, 580, 611
Ksp22I	TGATCA	2 cut(s)	142, 280
Kzo9I	GATC	3 cut(s)	142, 269, 280
LmnI	GCTCC	1 cut(s)	45
LpnPI	CCDG	7 cut(s)	29, 174, 238, 265, 312, 447, 577
LweI	GCATC	2 cut(s)	143, 281
MaeII	ACGT	2 cut(s)	202, 438
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	3 cut(s)	144, 271, 282
MboI	GATC	3 cut(s)	142, 269, 280
MboII	GAAGA	6 cut(s)	63, 109, 166, 304, 377, 661
MhlI	GDGCHC	1 cut(s)	23
MlsI	TGGCCA	1 cut(s)	537
MluCI	AATT	5 cut(s)	134, 348, 417, 480, 539
MluNI	TGGCCA	1 cut(s)	537
MmeI	TCCRAC	2 cut(s)	67, 387
MnlI	CCTC	5 cut(s)	94, 182, 320, 574, 655
Mox20I	TGGCCA	1 cut(s)	537
Mph1103I	ATGCAT	3 cut(s)	158, 233, 296
MroXI	GAANNNNTTC	1 cut(s)	588
MscI	TGGCCA	1 cut(s)	537
MseI	TTAA	1 cut(s)	670
Msp20I	TGGCCA	1 cut(s)	537
MspI	CCGG	1 cut(s)	564
MspR9I	CCNGG	1 cut(s)	253
MvaI	CCWGG	1 cut(s)	253
MwoI	GCNNNNNNNGC	2 cut(s)	27, 137
NdeII	GATC	3 cut(s)	142, 269, 280
NlaIII	CATG	7 cut(s)	40, 152, 231, 290, 524, 580, 611
NlaIV	GGNNCC	1 cut(s)	432
NmuCI	GTSAC	1 cut(s)	181
NsiI	ATGCAT	3 cut(s)	158, 233, 296
NspI	RCATGY	1 cut(s)	231
PaeI	GCATGC	1 cut(s)	231
PagI	TCATGA	1 cut(s)	520
PdmI	GAANNNNTTC	1 cut(s)	588
PfeI	GAWTC	3 cut(s)	100, 382, 584
Ppu21I	YACGTR	1 cut(s)	203
Psp6I	CCWGG	1 cut(s)	251
PspGI	CCWGG	1 cut(s)	251
PspN4I	GGNNCC	1 cut(s)	432
PstI	CTGCAG	2 cut(s)	190, 328
RsaI	GTAC	3 cut(s)	212, 454, 619
RsaNI	GTAC	3 cut(s)	211, 453, 618
SaqAI	TTAA	1 cut(s)	670
Sau3AI	GATC	3 cut(s)	142, 269, 280
ScrFI	CCNGG	1 cut(s)	253
SduI	GDGCHC	1 cut(s)	23
SfaNI	GCATC	2 cut(s)	143, 281
SfcI	CTRYAG	2 cut(s)	186, 324
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
SphI	GCATGC	1 cut(s)	231
Sse9I	AATT	5 cut(s)	134, 348, 417, 480, 539
SsiI	CCGC	1 cut(s)	265
SspI	AATATT	1 cut(s)	259
StyD4I	CCNGG	1 cut(s)	251
StyI	CCWWGG	2 cut(s)	163, 301
TaaI	ACNGT	1 cut(s)	497
TaiI	ACGT	2 cut(s)	205, 441
TaqI	TCGA	3 cut(s)	86, 592, 647
TasI	AATT	5 cut(s)	134, 348, 417, 480, 539
TatI	WGTACW	2 cut(s)	210, 617
TfiI	GAWTC	3 cut(s)	100, 382, 584
Tru1I	TTAA	1 cut(s)	670
Tru9I	TTAA	1 cut(s)	670
TscAI	CASTG	1 cut(s)	23
TseFI	GTSAC	1 cut(s)	181
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	5 cut(s)	25, 411, 506, 558, 565
TspRI	CASTG	1 cut(s)	23
XapI	RAATTY	1 cut(s)	134
XceI	RCATGY	1 cut(s)	231
XmiI	GTMKAC	1 cut(s)	357
XmnI	GAANNNNTTC	1 cut(s)	588
Zsp2I	ATGCAT	3 cut(s)	158, 233, 296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.