gamma-irradiation and mitomycin c induced
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| HATPase_c_3 | PF13589 | 177 - 308 | 5.5e-10 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1665 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1778 |
| Acc36I | ACCTGC | 1 cut(s) | 3188 |
| AccB1I | GGYRCC | 1 cut(s) | 3301 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2230 |
| AccBSI | CCGCTC | 1 cut(s) | 4857 |
| AccI | GTMKAC | 3 cut(s) | 258, 530, 3228 |
| AccII | CGCG | 4 cut(s) | 117, 263, 1881, 2451 |
| AciI | CCGC | 8 cut(s) | 99, 286, 316, 1420, 1881, 3484, 3850, 4855 |
| AclI | AACGTT | 1 cut(s) | 1935 |
| AclWI | GGATC | 7 cut(s) | 492, 938, 951, 1470, 2355, 4176, 4376 |
| AcoI | YGGCCR | 4 cut(s) | 1417, 2295, 3406, 3481 |
| AcyI | GRCGYC | 1 cut(s) | 2176 |
| AdeI | CACNNNGTG | 1 cut(s) | 2108 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 782, 2230, 4289, 4334 |
| AflII | CTTAAG | 1 cut(s) | 2468 |
| AflIII | ACRYGT | 2 cut(s) | 261, 477 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1392 |
| AhlI | ACTAGT | 1 cut(s) | 4115 |
| AjnI | CCWGG | 5 cut(s) | 661, 1871, 2343, 2959, 4544 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 4841, 4873 |
| Alw21I | GWGCWC | 5 cut(s) | 207, 3933, 4204, 4530, 4905 |
| AlwI | GGATC | 7 cut(s) | 492, 938, 951, 1470, 2355, 4176, 4376 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 4385 |
| AoxI | GGCC | 9 cut(s) | 1417, 2012, 2295, 3178, 3406, 3432, 3481, 4325, 4483 |
| ApeKI | GCWGC | 9 cut(s) | 2862, 3542, 3709, 4007, 4010, 4193, 4562, 4720, 4917 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2416, 2448 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 3459 |
| AspLEI | GCGC | 4 cut(s) | 117, 1881, 2451, 4255 |
| AspS9I | GGNCC | 7 cut(s) | 659, 803, 1199, 1869, 2456, 2632, 2963 |
| AsuC2I | CCSGG | 1 cut(s) | 2310 |
| AsuII | TTCGAA | 1 cut(s) | 153 |
| AsuNHI | GCTAGC | 1 cut(s) | 4913 |
| AvaII | GGWCC | 7 cut(s) | 659, 803, 1199, 1869, 2456, 2632, 2963 |
| BaeGI | GKGCMC | 1 cut(s) | 4836 |
| BalI | TGGCCA | 2 cut(s) | 2297, 3408 |
| BamHI | GGATCC | 1 cut(s) | 943 |
| BanI | GGYRCC | 1 cut(s) | 3301 |
| BanII | GRGCYC | 5 cut(s) | 308, 3933, 4204, 4530, 4905 |
| BauI | CACGAG | 1 cut(s) | 4566 |
| BbsI | GAAGAC | 5 cut(s) | 440, 929, 1109, 1574, 1776 |
| Bbv12I | GWGCWC | 5 cut(s) | 207, 3933, 4204, 4530, 4905 |
| BbvI | GCAGC | 9 cut(s) | 2874, 3529, 3721, 3997, 4019, 4205, 4549, 4732, 4929 |
| BceAI | ACGGC | 5 cut(s) | 143, 563, 760, 3162, 4363 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1989, 2023 |
| BciT130I | CCWGG | 5 cut(s) | 663, 1873, 2345, 2961, 4546 |
| BciVI | GTATCC | 1 cut(s) | 2059 |
| BclI | TGATCA | 6 cut(s) | 2647, 3055, 3151, 3616, 4725, 4755 |
| BcnI | CCSGG | 1 cut(s) | 2310 |
| BcuI | ACTAGT | 1 cut(s) | 4115 |
| BfaI | CTAG | 5 cut(s) | 1577, 3131, 4032, 4116, 4914 |
| BfrI | CTTAAG | 1 cut(s) | 2468 |
| BfuAI | ACCTGC | 1 cut(s) | 3188 |
| BfuI | GTATCC | 1 cut(s) | 2059 |
| BglII | AGATCT | 4 cut(s) | 50, 58, 553, 2183 |
| Bme1390I | CCNGG | 6 cut(s) | 663, 1873, 2310, 2345, 2961, 4546 |
| Bme18I | GGWCC | 7 cut(s) | 659, 803, 1199, 1869, 2456, 2632, 2963 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1392 |
| BmgT120I | GGNCC | 7 cut(s) | 659, 803, 1199, 1869, 2456, 2632, 2963 |
| BmiI | GGNNCC | 8 cut(s) | 945, 2633, 2943, 3303, 3585, 3732, 4407, 4650 |
| BmrFI | CCNGG | 6 cut(s) | 663, 1873, 2310, 2345, 2961, 4546 |
| BmtI | GCTAGC | 1 cut(s) | 4917 |
| BoxI | GACNNNNGTC | 2 cut(s) | 657, 2461 |
| BpiI | GAAGAC | 5 cut(s) | 440, 929, 1109, 1574, 1776 |
| BpmI | CTGGAG | 6 cut(s) | 1022, 1248, 2252, 2265, 3857, 4218 |
| Bpu14I | TTCGAA | 1 cut(s) | 153 |
| BpuEI | CTTGAG | 4 cut(s) | 1451, 1652, 2247, 4226 |
| BpuMI | CCSGG | 1 cut(s) | 2310 |
| Bsa29I | ATCGAT | 2 cut(s) | 42, 3974 |
| BsaAI | YACGTR | 2 cut(s) | 3073, 3143 |
| BsaBI | GATNNNNATC | 1 cut(s) | 4455 |
| BsaHI | GRCGYC | 1 cut(s) | 2176 |
| BsaI | GGTCTC | 3 cut(s) | 1379, 4273, 4496 |
| BsaJI | CCNNGG | 7 cut(s) | 125, 662, 2412, 3172, 3662, 4486, 4545 |
| BsaWI | WCCGGW | 2 cut(s) | 2516, 4666 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1899, 1929, 4724, 4754, 4841, 4871 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 782, 2230, 4289, 4334 |
| Bse118I | RCCGGY | 1 cut(s) | 3434 |
| Bse3DI | GCAATG | 1 cut(s) | 1201 |
| Bse8I | GATNNNNATC | 1 cut(s) | 4455 |
| BseBI | CCWGG | 5 cut(s) | 663, 1873, 2345, 2961, 4546 |
| BseCI | ATCGAT | 2 cut(s) | 42, 3974 |
| BseDI | CCNNGG | 7 cut(s) | 125, 662, 2412, 3172, 3662, 4486, 4545 |
| BseJI | GATNNNNATC | 1 cut(s) | 4455 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 782, 2230, 4289, 4334 |
| BseMI | GCAATG | 1 cut(s) | 1201 |
| BseMII | CTCAG | 9 cut(s) | 422, 896, 1140, 2119, 2139, 2577, 3261, 3640, 4507 |
| BseRI | GAGGAG | 3 cut(s) | 108, 267, 1494 |
| BseSI | GKGCMC | 1 cut(s) | 4836 |
| BseXI | GCAGC | 9 cut(s) | 2874, 3529, 3721, 3997, 4019, 4205, 4549, 4732, 4929 |
| Bsh1236I | CGCG | 4 cut(s) | 117, 263, 1881, 2451 |
| Bsh1285I | CGRYCG | 1 cut(s) | 731 |
| BshFI | GGCC | 9 cut(s) | 1419, 2014, 2297, 3180, 3408, 3434, 3483, 4327, 4485 |
| BshNI | GGYRCC | 1 cut(s) | 3301 |
| BshVI | ATCGAT | 2 cut(s) | 42, 3974 |
| BsiEI | CGRYCG | 1 cut(s) | 731 |
| BsiHKAI | GWGCWC | 5 cut(s) | 207, 3933, 4204, 4530, 4905 |
| BsiSI | CCGG | 5 cut(s) | 2310, 2517, 3435, 3497, 4667 |
| BsiWI | CGTACG | 1 cut(s) | 3143 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 782, 2230, 4289, 4334 |
| BsmBI | CGTCTC | 1 cut(s) | 2164 |
| BsmI | GAATGC | 1 cut(s) | 1186 |
| BsnI | GGCC | 9 cut(s) | 1419, 2014, 2297, 3180, 3408, 3434, 3483, 4327, 4485 |
| Bso31I | GGTCTC | 3 cut(s) | 1379, 4273, 4496 |
| Bsp119I | TTCGAA | 1 cut(s) | 153 |
| Bsp1286I | GDGCHC | 7 cut(s) | 207, 308, 3933, 4204, 4530, 4836, 4905 |
| Bsp1407I | TGTACA | 2 cut(s) | 2912, 4216 |
| Bsp19I | CCATGG | 1 cut(s) | 4486 |
| BspACI | CCGC | 8 cut(s) | 99, 286, 316, 1420, 1881, 3484, 3850, 4855 |
| BspANI | GGCC | 9 cut(s) | 1419, 2014, 2297, 3180, 3408, 3434, 3483, 4327, 4485 |
| BspCNI | CTCAG | 9 cut(s) | 423, 897, 1141, 2118, 2140, 2578, 3262, 3639, 4506 |
| BspDI | ATCGAT | 2 cut(s) | 42, 3974 |
| BspFNI | CGCG | 4 cut(s) | 117, 263, 1881, 2451 |
| BspHI | TCATGA | 1 cut(s) | 3391 |
| BspLI | GGNNCC | 8 cut(s) | 945, 2633, 2943, 3303, 3585, 3732, 4407, 4650 |
| BspMAI | CTGCAG | 4 cut(s) | 58, 3199, 4009, 4483 |
| BspMI | ACCTGC | 1 cut(s) | 3188 |
| BspOI | GCTAGC | 1 cut(s) | 4917 |
| BspPI | GGATC | 7 cut(s) | 492, 938, 951, 1470, 2355, 4176, 4376 |
| BspT104I | TTCGAA | 1 cut(s) | 153 |
| BspT107I | GGYRCC | 1 cut(s) | 3301 |
| BspTI | CTTAAG | 1 cut(s) | 2468 |
| BspTNI | GGTCTC | 3 cut(s) | 1379, 4273, 4496 |
| BsrBI | CCGCTC | 1 cut(s) | 4857 |
| BsrDI | GCAATG | 1 cut(s) | 1201 |
| BsrFI | RCCGGY | 1 cut(s) | 3434 |
| BsrGI | TGTACA | 2 cut(s) | 2912, 4216 |
| BssAI | RCCGGY | 1 cut(s) | 3434 |
| BssECI | CCNNGG | 7 cut(s) | 125, 662, 2412, 3172, 3662, 4486, 4545 |
| BssNAI | GTATAC | 1 cut(s) | 531 |
| BssNI | GRCGYC | 1 cut(s) | 2176 |
| BssSI | CACGAG | 1 cut(s) | 4566 |
| BssT1I | CCWWGG | 3 cut(s) | 2412, 3172, 4486 |
| Bst1107I | GTATAC | 1 cut(s) | 531 |
| Bst2BI | CACGAG | 1 cut(s) | 4566 |
| Bst2UI | CCWGG | 5 cut(s) | 663, 1873, 2345, 2961, 4546 |
| Bst4CI | ACNGT | 8 cut(s) | 2576, 2661, 2839, 3493, 4108, 4471, 4504, 4842 |
| Bst6I | CTCTTC | 3 cut(s) | 1471, 3516, 4044 |
| BstACI | GRCGYC | 1 cut(s) | 2176 |
| BstAFI | CTTAAG | 1 cut(s) | 2468 |
| BstAUI | TGTACA | 2 cut(s) | 2912, 4216 |
| BstBAI | YACGTR | 2 cut(s) | 3073, 3143 |
| BstBI | TTCGAA | 1 cut(s) | 153 |
| BstDSI | CCRYGG | 3 cut(s) | 125, 3662, 4486 |
| BstFNI | CGCG | 4 cut(s) | 117, 263, 1881, 2451 |
| BstHHI | GCGC | 4 cut(s) | 117, 1881, 2451, 4255 |
| BstMCI | CGRYCG | 1 cut(s) | 731 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 112, 1302, 3146, 4199, 4568 |
| BstNI | CCWGG | 5 cut(s) | 663, 1873, 2345, 2961, 4546 |
| BstNSI | RCATGY | 6 cut(s) | 481, 1736, 1914, 2261, 2709, 4253 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 657, 2461 |
| BstSCI | CCNGG | 6 cut(s) | 661, 1871, 2308, 2343, 2959, 4544 |
| BstSLI | GKGCMC | 1 cut(s) | 4836 |
| BstUI | CGCG | 4 cut(s) | 117, 263, 1881, 2451 |
| BstV1I | GCAGC | 9 cut(s) | 2874, 3529, 3721, 3997, 4019, 4205, 4549, 4732, 4929 |
| BstV2I | GAAGAC | 5 cut(s) | 440, 929, 1109, 1574, 1776 |
| BstX2I | RGATCY | 9 cut(s) | 50, 58, 484, 553, 943, 1462, 2183, 4181, 4381 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 823, 3663 |
| BstYI | RGATCY | 9 cut(s) | 50, 58, 484, 553, 943, 1462, 2183, 4181, 4381 |
| BstZ17I | GTATAC | 1 cut(s) | 531 |
| Bsu15I | ATCGAT | 2 cut(s) | 42, 3974 |
| BsuI | GTATCC | 1 cut(s) | 2059 |
| BsuRI | GGCC | 9 cut(s) | 1419, 2014, 2297, 3180, 3408, 3434, 3483, 4327, 4485 |
| BsuTUI | ATCGAT | 2 cut(s) | 42, 3974 |
| BtgI | CCRYGG | 3 cut(s) | 125, 3662, 4486 |
| BtgZI | GCGATG | 1 cut(s) | 3768 |
| BtsI | GCAGTG | 3 cut(s) | 2766, 4002, 4357 |
| BveI | ACCTGC | 1 cut(s) | 3188 |
| CaiI | CAGNNNCTG | 1 cut(s) | 4385 |
| CciI | TCATGA | 1 cut(s) | 3391 |
| CfoI | GCGC | 4 cut(s) | 117, 1881, 2451, 4255 |
| Cfr10I | RCCGGY | 1 cut(s) | 3434 |
| Cfr13I | GGNCC | 7 cut(s) | 659, 803, 1199, 1869, 2456, 2632, 2963 |
| ClaI | ATCGAT | 2 cut(s) | 42, 3974 |
| CseI | GACGC | 2 cut(s) | 269, 2184 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 70, 105 |
| DraIII | CACNNNGTG | 1 cut(s) | 2108 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1778 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1392 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1778 |
| EaeI | YGGCCR | 4 cut(s) | 1417, 2295, 3406, 3481 |
| Eam1104I | CTCTTC | 3 cut(s) | 1471, 3516, 4044 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1392 |
| EarI | CTCTTC | 3 cut(s) | 1471, 3516, 4044 |
| EciI | GGCGGA | 1 cut(s) | 114 |
| Ecl136II | GAGCTC | 4 cut(s) | 3931, 4202, 4528, 4903 |
| Eco130I | CCWWGG | 3 cut(s) | 2412, 3172, 4486 |
| Eco147I | AGGCCT | 2 cut(s) | 2014, 4327 |
| Eco24I | GRGCYC | 5 cut(s) | 308, 3933, 4204, 4530, 4905 |
| Eco31I | GGTCTC | 3 cut(s) | 1379, 4273, 4496 |
| Eco32I | GATATC | 1 cut(s) | 4342 |
| Eco47I | GGWCC | 7 cut(s) | 659, 803, 1199, 1869, 2456, 2632, 2963 |
| Eco53kI | GAGCTC | 4 cut(s) | 3931, 4202, 4528, 4903 |
| EcoICRI | GAGCTC | 4 cut(s) | 3931, 4202, 4528, 4903 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1869, 2456, 2632 |
| EcoRII | CCWGG | 5 cut(s) | 661, 1871, 2343, 2959, 4544 |
| EcoRV | GATATC | 1 cut(s) | 4342 |
| EcoT14I | CCWWGG | 3 cut(s) | 2412, 3172, 4486 |
| EcoT22I | ATGCAT | 3 cut(s) | 1734, 3167, 4251 |
| EcoT38I | GRGCYC | 5 cut(s) | 308, 3933, 4204, 4530, 4905 |
| ErhI | CCWWGG | 3 cut(s) | 2412, 3172, 4486 |
| Esp3I | CGTCTC | 1 cut(s) | 2164 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 432, 464 |
| FauNDI | CATATG | 3 cut(s) | 1276, 2890, 3417 |
| FbaI | TGATCA | 6 cut(s) | 2647, 3055, 3151, 3616, 4725, 4755 |
| FblI | GTMKAC | 3 cut(s) | 258, 530, 3228 |
| FriOI | GRGCYC | 5 cut(s) | 308, 3933, 4204, 4530, 4905 |
| FspBI | CTAG | 5 cut(s) | 1577, 3131, 4032, 4116, 4914 |
| GlaI | GCGC | 4 cut(s) | 116, 1880, 2450, 4254 |
| GsuI | CTGGAG | 6 cut(s) | 1022, 1248, 2252, 2265, 3857, 4218 |
| HaeIII | GGCC | 9 cut(s) | 1419, 2014, 2297, 3180, 3408, 3434, 3483, 4327, 4485 |
| HapII | CCGG | 5 cut(s) | 2310, 2517, 3435, 3497, 4667 |
| HgaI | GACGC | 2 cut(s) | 269, 2184 |
| HhaI | GCGC | 4 cut(s) | 117, 1881, 2451, 4255 |
| Hin1I | GRCGYC | 1 cut(s) | 2176 |
| Hin6I | GCGC | 4 cut(s) | 115, 1879, 2449, 4253 |
| HinP1I | GCGC | 4 cut(s) | 115, 1879, 2449, 4253 |
| HincII | GTYRAC | 4 cut(s) | 628, 2395, 3358, 4749 |
| HindII | GTYRAC | 4 cut(s) | 628, 2395, 3358, 4749 |
| HindIII | AAGCTT | 1 cut(s) | 982 |
| HpaI | GTTAAC | 1 cut(s) | 2395 |
| HpaII | CCGG | 5 cut(s) | 2310, 2517, 3435, 3497, 4667 |
| Hpy99I | CGWCG | 1 cut(s) | 2178 |
| HpyCH4III | ACNGT | 8 cut(s) | 2576, 2661, 2839, 3493, 4108, 4471, 4504, 4842 |
| HpyCH4IV | ACGT | 4 cut(s) | 282, 1935, 3072, 3142 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 112, 1302, 3146, 4199, 4568 |
| HpySE526I | ACGT | 4 cut(s) | 282, 1935, 3072, 3142 |
| Hsp92I | GRCGYC | 1 cut(s) | 2176 |
| HspAI | GCGC | 4 cut(s) | 115, 1879, 2449, 4253 |
| Ksp22I | TGATCA | 6 cut(s) | 2647, 3055, 3151, 3616, 4725, 4755 |
| KspAI | GTTAAC | 1 cut(s) | 2395 |
| LmnI | GCTCC | 8 cut(s) | 1907, 3604, 3742, 4199, 4411, 4533, 4648, 4862 |
| Lsp1109I | GCAGC | 9 cut(s) | 2874, 3529, 3721, 3997, 4019, 4205, 4549, 4732, 4929 |
| MaeI | CTAG | 5 cut(s) | 1577, 3131, 4032, 4116, 4914 |
| MaeII | ACGT | 4 cut(s) | 282, 1935, 3072, 3142 |
| MbiI | CCGCTC | 1 cut(s) | 4857 |
| MfeI | CAATTG | 4 cut(s) | 1493, 1947, 2196, 4759 |
| MflI | RGATCY | 9 cut(s) | 50, 58, 484, 553, 943, 1462, 2183, 4181, 4381 |
| MhlI | GDGCHC | 7 cut(s) | 207, 308, 3933, 4204, 4530, 4836, 4905 |
| MlsI | TGGCCA | 2 cut(s) | 2297, 3408 |
| MluI | ACGCGT | 1 cut(s) | 261 |
| MluNI | TGGCCA | 2 cut(s) | 2297, 3408 |
| MlyI | GAGTC | 5 cut(s) | 916, 2576, 3646, 3695, 3710 |
| MmeI | TCCRAC | 4 cut(s) | 1580, 2602, 3258, 4824 |
| Mox20I | TGGCCA | 2 cut(s) | 2297, 3408 |
| Mph1103I | ATGCAT | 3 cut(s) | 1734, 3167, 4251 |
| MroXI | GAANNNNTTC | 1 cut(s) | 3459 |
| MscI | TGGCCA | 2 cut(s) | 2297, 3408 |
| MslI | CAYNNNNRTG | 4 cut(s) | 615, 2562, 3099, 3573 |
| Msp20I | TGGCCA | 2 cut(s) | 2297, 3408 |
| MspA1I | CMGCKG | 4 cut(s) | 3486, 4010, 4196, 4723 |
| MspCI | CTTAAG | 1 cut(s) | 2468 |
| MspI | CCGG | 5 cut(s) | 2310, 2517, 3435, 3497, 4667 |
| MspR9I | CCNGG | 6 cut(s) | 663, 1873, 2310, 2345, 2961, 4546 |
| MunI | CAATTG | 4 cut(s) | 1493, 1947, 2196, 4759 |
| Mva1269I | GAATGC | 1 cut(s) | 1186 |
| MvaI | CCWGG | 5 cut(s) | 663, 1873, 2345, 2961, 4546 |
| MvnI | CGCG | 4 cut(s) | 117, 263, 1881, 2451 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 112, 1302, 3146, 4199, 4568 |
| NciI | CCSGG | 1 cut(s) | 2310 |
| NcoI | CCATGG | 1 cut(s) | 4486 |
| NdeI | CATATG | 3 cut(s) | 1276, 2890, 3417 |
| NheI | GCTAGC | 1 cut(s) | 4913 |
| NlaIV | GGNNCC | 8 cut(s) | 945, 2633, 2943, 3303, 3585, 3732, 4407, 4650 |
| NmuCI | GTSAC | 8 cut(s) | 118, 422, 3190, 3687, 3702, 4352, 4471, 4777 |
| NsiI | ATGCAT | 3 cut(s) | 1734, 3167, 4251 |
| NspI | RCATGY | 6 cut(s) | 481, 1736, 1914, 2261, 2709, 4253 |
| NspV | TTCGAA | 1 cut(s) | 153 |
| PaeI | GCATGC | 3 cut(s) | 1736, 2261, 4253 |
| PagI | TCATGA | 1 cut(s) | 3391 |
| PceI | AGGCCT | 2 cut(s) | 2014, 4327 |
| PciI | ACATGT | 1 cut(s) | 477 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 279 |
| PctI | GAATGC | 1 cut(s) | 1186 |
| PdmI | GAANNNNTTC | 1 cut(s) | 3459 |
| Pfl23II | CGTACG | 1 cut(s) | 3143 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2230 |
| PfoI | TCCNGGA | 1 cut(s) | 2959 |
| Ple19I | CGATCG | 1 cut(s) | 731 |
| PleI | GAGTC | 5 cut(s) | 915, 2575, 3646, 3694, 3709 |
| PpsI | GAGTC | 5 cut(s) | 915, 2575, 3646, 3694, 3709 |
| Ppu21I | YACGTR | 2 cut(s) | 3073, 3143 |
| PpuMI | RGGWCCY | 3 cut(s) | 1869, 2456, 2632 |
| PscI | ACATGT | 1 cut(s) | 477 |
| PshAI | GACNNNNGTC | 2 cut(s) | 657, 2461 |
| PsiI | TTATAA | 1 cut(s) | 1665 |
| Psp124BI | GAGCTC | 4 cut(s) | 3933, 4204, 4530, 4905 |
| Psp1406I | AACGTT | 1 cut(s) | 1935 |
| Psp5II | RGGWCCY | 3 cut(s) | 1869, 2456, 2632 |
| Psp6I | CCWGG | 5 cut(s) | 661, 1871, 2343, 2959, 4544 |
| PspGI | CCWGG | 5 cut(s) | 661, 1871, 2343, 2959, 4544 |
| PspLI | CGTACG | 1 cut(s) | 3143 |
| PspN4I | GGNNCC | 8 cut(s) | 945, 2633, 2943, 3303, 3585, 3732, 4407, 4650 |
| PspPI | GGNCC | 7 cut(s) | 659, 803, 1199, 1869, 2456, 2632, 2963 |
| PspPPI | RGGWCCY | 3 cut(s) | 1869, 2456, 2632 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 4254, 4286 |
| PstI | CTGCAG | 4 cut(s) | 58, 3199, 4009, 4483 |
| PstNI | CAGNNNCTG | 1 cut(s) | 4385 |
| PsuI | RGATCY | 9 cut(s) | 50, 58, 484, 553, 943, 1462, 2183, 4181, 4381 |
| PvuI | CGATCG | 1 cut(s) | 731 |
| PvuII | CAGCTG | 3 cut(s) | 4010, 4196, 4723 |
| RseI | CAYNNNNRTG | 4 cut(s) | 615, 2562, 3099, 3573 |
| SacI | GAGCTC | 4 cut(s) | 3933, 4204, 4530, 4905 |
| Sau96I | GGNCC | 7 cut(s) | 659, 803, 1199, 1869, 2456, 2632, 2963 |
| SchI | GAGTC | 5 cut(s) | 916, 2576, 3646, 3695, 3710 |
| ScrFI | CCNGG | 6 cut(s) | 663, 1873, 2310, 2345, 2961, 4546 |
| SduI | GDGCHC | 7 cut(s) | 207, 308, 3933, 4204, 4530, 4836, 4905 |
| SfuI | TTCGAA | 1 cut(s) | 153 |
| SinI | GGWCC | 7 cut(s) | 659, 803, 1199, 1869, 2456, 2632, 2963 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 615, 2562, 3099, 3573 |
| SmlI | CTYRAG | 5 cut(s) | 1466, 1631, 2262, 2468, 4205 |
| SmoI | CTYRAG | 5 cut(s) | 1466, 1631, 2262, 2468, 4205 |
| SpeI | ACTAGT | 1 cut(s) | 4115 |
| SphI | GCATGC | 3 cut(s) | 1736, 2261, 4253 |
| SseBI | AGGCCT | 2 cut(s) | 2014, 4327 |
| SsiI | CCGC | 8 cut(s) | 99, 286, 316, 1420, 1881, 3484, 3850, 4855 |
| SspMI | CTAG | 5 cut(s) | 1577, 3131, 4032, 4116, 4914 |
| SstI | GAGCTC | 4 cut(s) | 3933, 4204, 4530, 4905 |
| StuI | AGGCCT | 2 cut(s) | 2014, 4327 |
| StyD4I | CCNGG | 6 cut(s) | 661, 1871, 2308, 2343, 2959, 4544 |
| StyI | CCWWGG | 3 cut(s) | 2412, 3172, 4486 |
| TaaI | ACNGT | 8 cut(s) | 2576, 2661, 2839, 3493, 4108, 4471, 4504, 4842 |
| TaiI | ACGT | 4 cut(s) | 285, 1938, 3075, 3145 |
| TaqI | TCGA | 9 cut(s) | 42, 147, 153, 1565, 1999, 3127, 3463, 3974, 4294 |
| TaqII | GACCGA | 1 cut(s) | 900 |
| TatI | WGTACW | 6 cut(s) | 2355, 2912, 3488, 3767, 4022, 4216 |
| TauI | GCSGC | 2 cut(s) | 1422, 3486 |
| TseFI | GTSAC | 8 cut(s) | 118, 422, 3190, 3687, 3702, 4352, 4471, 4777 |
| TseI | GCWGC | 9 cut(s) | 2862, 3542, 3709, 4007, 4010, 4193, 4562, 4720, 4917 |
| Tsp45I | GTSAC | 8 cut(s) | 118, 422, 3190, 3687, 3702, 4352, 4471, 4777 |
| TspGWI | ACGGA | 4 cut(s) | 687, 753, 993, 3651 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2230 |
| Vha464I | CTTAAG | 1 cut(s) | 2468 |
| VpaK11BI | GGWCC | 7 cut(s) | 659, 803, 1199, 1869, 2456, 2632, 2963 |
| XbaI | TCTAGA | 1 cut(s) | 4031 |
| XceI | RCATGY | 6 cut(s) | 481, 1736, 1914, 2261, 2709, 4253 |
| XmiI | GTMKAC | 3 cut(s) | 258, 530, 3228 |
| XmnI | GAANNNNTTC | 1 cut(s) | 3459 |
| XspI | CTAG | 5 cut(s) | 1577, 3131, 4032, 4116, 4914 |
| Zsp2I | ATGCAT | 3 cut(s) | 1734, 3167, 4251 |