Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001133

Physical Location & Seq

Genomic Coordinates Reverse (-)

34085796 .. 34092649

Gene Structure 6854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG204000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGTTGCTGATGTTACACATGCATTGCAACAGCCTGCTGAGAGAAAGTTGGATGACGGAGGTGTTGCCAGTGGTGGTCTTCGTGAATTGATACCATGTATTGCAAGGACAGCAGTTGCTGTTGGGGTGGATGCAATTTTCATGGAGGTACATGATGATCCTTCTAATGCGCCAGTTGATGGTCCAACCCAATGGCCGTTGCGCCATTTGGAGGAACTACTGGTAGAGCTTATTGCAATTGCTAGGGTAAGCAAGGGGAAGCAACGCTTCAACATTGATCTCTCACCCTATCGTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0005996 GO:0008150 GO:0008152 GO:0008676 GO:0009058 GO:0009059 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010306 GO:0010383 GO:0010393 GO:0010396 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016765 GO:0017144 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044283 GO:0044706 GO:0045229 GO:0045488 GO:0045489 GO:0046364 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052325 GO:0052546 GO:0060560 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

DAHP_synth_1

Protein Analysis

99

Amino Acids

10.78

Weight (kDa)

5.04

Isoelectric Point (pI)

36.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAHP_synth_1	PF00793	2 - 74	1e-08	DAHP synthetase I family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24275 AT5G24275 AT5G24275 AT5G24275 AT5G24280 AT5G24280 AT5G24280
fragaria_vesca	FvH4_7g31550 FvH4_7g31550 FvH4_7g32260
malus_domestica	MD07G1288100.v1.1
prunus_persica	Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1
pyrus_communis	pycom07g26090
rosa_chinensis	RchiOBHm_Chr1g0380531 RchiOBHm_Chr1g0381531
rosa_laevigata	RLG00000026287
rosa_multiflora	Rmu_co8450373.1_g000001 Rmu_sc0000701.1_g000020 Rmu_sc0002045.1_g000020 Rmu_sc0010633.1_g000011 Rmu_ssc0000015.1_g000008
rosa_roxburghii	Rroxscaffold_4G00279220
rosa_rugosa	Rorug01G0422200 Rorug01G0422300 Rorug06G0084200
rosa_samantha	Rh1AG446800 Rh1BG402100 Rh1CG416300 Rh1CG424300 Rh1DG432300 Rh2DG318300 Rh3BG122000 Rh5AG085500 Rh5AG170300 Rh5BG265400 Rh6AG200100 Rh6AG200300 Rh6AG200400 Rh6BG025800 Rh6BG203500 Rh6BG203600 Rh6BG203800 Rh6CG203700 Rh6CG203800 Rh6CG204000 Rh6DG195200
rosa_wichuraiana	Rw1G038870 Rw1G039500 Rw6G017380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	179
AclWI	GGATC	1 cut(s)	152
AcoI	YGGCCR	1 cut(s)	194
AfaI	GTAC	1 cut(s)	150
AfiI	CCNNNNNNNGG	2 cut(s)	179, 211
AgsI	TTSAA	1 cut(s)	271
AluBI	AGCT	1 cut(s)	229
AluI	AGCT	1 cut(s)	229
AlwI	GGATC	1 cut(s)	152
AlwNI	CAGNNNCTG	1 cut(s)	119
AoxI	GGCC	1 cut(s)	194
AspLEI	GCGC	2 cut(s)	172, 204
AspS9I	GGNCC	1 cut(s)	182
AsuHPI	GGTGA	1 cut(s)	276
AvaII	GGWCC	1 cut(s)	182
BbsI	GAAGAC	1 cut(s)	71
BccI	CCATC	1 cut(s)	173
BceAI	ACGGC	1 cut(s)	181
BfaI	CTAG	1 cut(s)	243
Bme18I	GGWCC	1 cut(s)	182
BmgT120I	GGNCC	1 cut(s)	182
BmsI	GCATC	1 cut(s)	121
BpiI	GAAGAC	1 cut(s)	71
Bsc4I	CCNNNNNNNGG	2 cut(s)	179, 211
Bse1I	ACTGG	3 cut(s)	69, 173, 225
Bse3DI	GCAATG	1 cut(s)	23
BseGI	GGATG	2 cut(s)	58, 136
BseLI	CCNNNNNNNGG	2 cut(s)	179, 211
BseMI	GCAATG	1 cut(s)	23
BseMII	CTCAG	1 cut(s)	30
BseNI	ACTGG	3 cut(s)	69, 173, 225
BshFI	GGCC	1 cut(s)	196
BslI	CCNNNNNNNGG	2 cut(s)	179, 211
BsnI	GGCC	1 cut(s)	196
Bsp143I	GATC	2 cut(s)	157, 277
BspANI	GGCC	1 cut(s)	196
BspCNI	CTCAG	1 cut(s)	31
BspPI	GGATC	1 cut(s)	152
BsrDI	GCAATG	1 cut(s)	23
BsrI	ACTGG	3 cut(s)	69, 173, 225
BssMI	GATC	2 cut(s)	157, 277
BstC8I	GCNNGC	1 cut(s)	36
BstDEI	CTNAG	1 cut(s)	39
BstF5I	GGATG	2 cut(s)	58, 136
BstHHI	GCGC	2 cut(s)	172, 204
BstKTI	GATC	2 cut(s)	160, 280
BstMBI	GATC	2 cut(s)	157, 277
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstNSI	RCATGY	1 cut(s)	23
BstV2I	GAAGAC	1 cut(s)	71
BstXI	CCANNNNNNTGG	1 cut(s)	192
BsuRI	GGCC	1 cut(s)	196
BtsCI	GGATG	2 cut(s)	58, 136
BtsIMutI	CAGTG	1 cut(s)	76
Cac8I	GCNNGC	1 cut(s)	36
CaiI	CAGNNNCTG	1 cut(s)	119
CfoI	GCGC	2 cut(s)	172, 204
Cfr13I	GGNCC	1 cut(s)	182
Csp6I	GTAC	1 cut(s)	149
CviAII	CATG	4 cut(s)	20, 96, 142, 152
CviJI	RGCY	3 cut(s)	34, 196, 229
CviKI_1	RGCY	3 cut(s)	34, 196, 229
CviQI	GTAC	1 cut(s)	149
DdeI	CTNAG	1 cut(s)	39
DpnI	GATC	2 cut(s)	159, 279
DpnII	GATC	2 cut(s)	157, 277
EaeI	YGGCCR	1 cut(s)	194
Eco47I	GGWCC	1 cut(s)	182
EcoT22I	ATGCAT	1 cut(s)	25
FaeI	CATG	4 cut(s)	23, 99, 145, 155
FaiI	YATR	4 cut(s)	21, 97, 143, 153
FalI	AAGNNNNNCTT	2 cut(s)	251, 283
FatI	CATG	4 cut(s)	19, 95, 141, 151
FokI	GGATG	2 cut(s)	65, 143
FspBI	CTAG	1 cut(s)	243
GlaI	GCGC	2 cut(s)	171, 203
HaeIII	GGCC	1 cut(s)	196
HhaI	GCGC	2 cut(s)	172, 204
Hin1II	CATG	4 cut(s)	23, 99, 145, 155
Hin6I	GCGC	2 cut(s)	170, 202
HinP1I	GCGC	2 cut(s)	170, 202
HphI	GGTGA	1 cut(s)	276
Hpy188III	TCNNGA	2 cut(s)	83, 293
HpyAV	CCTTC	1 cut(s)	171
HpyCH4V	TGCA	5 cut(s)	23, 28, 104, 134, 236
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
HpyF3I	CTNAG	1 cut(s)	39
Hsp92II	CATG	4 cut(s)	23, 99, 145, 155
HspAI	GCGC	2 cut(s)	170, 202
Kzo9I	GATC	2 cut(s)	157, 277
LpnPI	CCDG	4 cut(s)	48, 82, 186, 206
LweI	GCATC	1 cut(s)	121
MaeI	CTAG	1 cut(s)	243
MaeIII	GTNAC	1 cut(s)	13
MalI	GATC	2 cut(s)	159, 279
MboI	GATC	2 cut(s)	157, 277
MboII	GAAGA	1 cut(s)	71
MfeI	CAATTG	1 cut(s)	237
MluCI	AATT	3 cut(s)	86, 135, 237
MmeI	TCCRAC	2 cut(s)	30, 209
MnlI	CCTC	3 cut(s)	53, 139, 205
Mph1103I	ATGCAT	1 cut(s)	25
MunI	CAATTG	1 cut(s)	237
MwoI	GCNNNNNNNGC	1 cut(s)	110
NdeII	GATC	2 cut(s)	157, 277
NlaIII	CATG	4 cut(s)	23, 99, 145, 155
NsiI	ATGCAT	1 cut(s)	25
NspI	RCATGY	1 cut(s)	23
PflMI	CCANNNNNTGG	1 cut(s)	179
PspPI	GGNCC	1 cut(s)	182
PstNI	CAGNNNCTG	1 cut(s)	119
RsaI	GTAC	1 cut(s)	150
RsaNI	GTAC	1 cut(s)	149
Sau3AI	GATC	2 cut(s)	157, 277
Sau96I	GGNCC	1 cut(s)	182
SetI	ASST	3 cut(s)	64, 150, 231
SfaNI	GCATC	1 cut(s)	121
SinI	GGWCC	1 cut(s)	182
Sse9I	AATT	3 cut(s)	86, 135, 237
SspMI	CTAG	1 cut(s)	243
TasI	AATT	3 cut(s)	86, 135, 237
TscAI	CASTG	1 cut(s)	76
TspDTI	ATGAA	1 cut(s)	130
TspGWI	ACGGA	1 cut(s)	72
TspRI	CASTG	1 cut(s)	76
Van91I	CCANNNNNTGG	1 cut(s)	179
VpaK11BI	GGWCC	1 cut(s)	182
XceI	RCATGY	1 cut(s)	23
XspI	CTAG	1 cut(s)	243
Zsp2I	ATGCAT	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.