gamma-irradiation and mitomycin c induced
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| HATPase_c_3 | PF13589 | 124 - 255 | 8e-10 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1506 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1619 |
| Acc36I | ACCTGC | 1 cut(s) | 3026 |
| AccB1I | GGYRCC | 1 cut(s) | 3139 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 623, 2071 |
| AccI | GTMKAC | 2 cut(s) | 371, 3066 |
| AccII | CGCG | 3 cut(s) | 2292, 2597, 4731 |
| AciI | CCGC | 8 cut(s) | 127, 157, 1261, 2597, 3322, 3820, 4693, 4729 |
| AclWI | GGATC | 7 cut(s) | 19, 333, 779, 792, 1311, 2196, 4014 |
| AcoI | YGGCCR | 5 cut(s) | 1258, 2136, 2985, 3244, 3319 |
| AcyI | GRCGYC | 1 cut(s) | 2017 |
| AdeI | CACNNNGTG | 1 cut(s) | 1949 |
| AfeI | AGCGCT | 1 cut(s) | 301 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 508, 623, 2071, 4127, 4172, 4704 |
| AflII | CTTAAG | 1 cut(s) | 2309 |
| AflIII | ACRYGT | 1 cut(s) | 318 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1233 |
| AhlI | ACTAGT | 1 cut(s) | 3953 |
| AjnI | CCWGG | 6 cut(s) | 502, 1191, 1712, 2184, 2797, 4382 |
| Alw21I | GWGCWC | 4 cut(s) | 3771, 4042, 4368, 4779 |
| Alw26I | GTCTC | 9 cut(s) | 374, 1220, 1246, 1370, 2005, 3482, 4111, 4331, 4334 |
| AlwI | GGATC | 7 cut(s) | 19, 333, 779, 792, 1311, 2196, 4014 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 4223 |
| Aor51HI | AGCGCT | 1 cut(s) | 301 |
| ApeKI | GCWGC | 7 cut(s) | 2700, 3380, 3547, 3845, 3848, 4031, 4558 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2257, 2289 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 3297 |
| AspLEI | GCGC | 4 cut(s) | 302, 2292, 4093, 4733 |
| AspS9I | GGNCC | 7 cut(s) | 500, 644, 1040, 1710, 2297, 2473, 2801 |
| AsuC2I | CCSGG | 1 cut(s) | 2151 |
| AsuII | TTCGAA | 2 cut(s) | 2368, 2456 |
| AvaII | GGWCC | 6 cut(s) | 644, 1040, 1710, 2297, 2473, 2801 |
| BaeGI | GKGCMC | 2 cut(s) | 4674, 4710 |
| BalI | TGGCCA | 2 cut(s) | 2138, 3246 |
| BamHI | GGATCC | 1 cut(s) | 784 |
| BanI | GGYRCC | 1 cut(s) | 3139 |
| BanII | GRGCYC | 4 cut(s) | 3771, 4042, 4368, 4779 |
| BauI | CACGAG | 1 cut(s) | 4404 |
| BbsI | GAAGAC | 6 cut(s) | 281, 770, 950, 1415, 1617, 4161 |
| Bbv12I | GWGCWC | 4 cut(s) | 3771, 4042, 4368, 4779 |
| BbvI | GCAGC | 7 cut(s) | 2712, 3367, 3559, 3835, 3857, 4043, 4570 |
| BceAI | ACGGC | 1 cut(s) | 4201 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1830, 1864 |
| BciT130I | CCWGG | 6 cut(s) | 504, 1193, 1714, 2186, 2799, 4384 |
| BciVI | GTATCC | 1 cut(s) | 1900 |
| BclI | TGATCA | 5 cut(s) | 2485, 2893, 3454, 4563, 4593 |
| BcnI | CCSGG | 1 cut(s) | 2151 |
| BcoDI | GTCTC | 9 cut(s) | 374, 1220, 1246, 1370, 2005, 3482, 4111, 4331, 4334 |
| BcuI | ACTAGT | 1 cut(s) | 3953 |
| BfaI | CTAG | 6 cut(s) | 200, 1418, 2969, 3870, 3954, 4788 |
| BfoI | RGCGCY | 1 cut(s) | 303 |
| BfrI | CTTAAG | 1 cut(s) | 2309 |
| BfuAI | ACCTGC | 1 cut(s) | 3026 |
| BfuI | GTATCC | 1 cut(s) | 1900 |
| BglII | AGATCT | 1 cut(s) | 2024 |
| BisI | GCNGC | 9 cut(s) | 1261, 2701, 3322, 3381, 3548, 3846, 3849, 4032, 4559 |
| BlsI | GCNGC | 9 cut(s) | 1262, 2702, 3323, 3382, 3549, 3847, 3850, 4033, 4560 |
| BmcAI | AGTACT | 2 cut(s) | 2655, 3952 |
| Bme1390I | CCNGG | 7 cut(s) | 504, 1193, 1714, 2151, 2186, 2799, 4384 |
| Bme18I | GGWCC | 6 cut(s) | 644, 1040, 1710, 2297, 2473, 2801 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1233 |
| BmgT120I | GGNCC | 7 cut(s) | 500, 644, 1040, 1710, 2297, 2473, 2801 |
| BmiI | GGNNCC | 6 cut(s) | 786, 2474, 3141, 3423, 3570, 4245 |
| BmrFI | CCNGG | 7 cut(s) | 504, 1193, 1714, 2151, 2186, 2799, 4384 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2302 |
| BpiI | GAAGAC | 6 cut(s) | 281, 770, 950, 1415, 1617, 4161 |
| BpmI | CTGGAG | 4 cut(s) | 1089, 1214, 2106, 4056 |
| Bpu10I | CCTNAGC | 1 cut(s) | 72 |
| Bpu14I | TTCGAA | 2 cut(s) | 2368, 2456 |
| BpuEI | CTTGAG | 4 cut(s) | 1292, 1493, 2088, 4064 |
| BpuMI | CCSGG | 1 cut(s) | 2151 |
| Bsa29I | ATCGAT | 1 cut(s) | 3812 |
| BsaAI | YACGTR | 2 cut(s) | 2981, 3605 |
| BsaBI | GATNNNNATC | 1 cut(s) | 4293 |
| BsaHI | GRCGYC | 1 cut(s) | 2017 |
| BsaI | GGTCTC | 3 cut(s) | 1220, 4111, 4334 |
| BsaJI | CCNNGG | 7 cut(s) | 502, 503, 2253, 3010, 4324, 4383, 4702 |
| BsaWI | WCCGGW | 4 cut(s) | 879, 2338, 2357, 4504 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1740, 1770, 4562, 4592 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 508, 623, 2071, 4127, 4172, 4704 |
| Bse1I | ACTGG | 9 cut(s) | 179, 502, 772, 867, 956, 1619, 2169, 3732, 4212 |
| Bse3DI | GCAATG | 1 cut(s) | 1042 |
| Bse8I | GATNNNNATC | 1 cut(s) | 4293 |
| BseBI | CCWGG | 6 cut(s) | 504, 1193, 1714, 2186, 2799, 4384 |
| BseCI | ATCGAT | 1 cut(s) | 3812 |
| BseDI | CCNNGG | 7 cut(s) | 502, 503, 2253, 3010, 4324, 4383, 4702 |
| BseJI | GATNNNNATC | 1 cut(s) | 4293 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 508, 623, 2071, 4127, 4172, 4704 |
| BseMI | GCAATG | 1 cut(s) | 1042 |
| BseMII | CTCAG | 9 cut(s) | 63, 263, 737, 981, 1960, 1980, 2418, 3099, 4345 |
| BseNI | ACTGG | 9 cut(s) | 179, 502, 772, 867, 956, 1619, 2169, 3732, 4212 |
| BseRI | GAGGAG | 1 cut(s) | 1335 |
| BseSI | GKGCMC | 2 cut(s) | 4674, 4710 |
| BseXI | GCAGC | 7 cut(s) | 2712, 3367, 3559, 3835, 3857, 4043, 4570 |
| Bsh1236I | CGCG | 3 cut(s) | 2292, 2597, 4731 |
| Bsh1285I | CGRYCG | 1 cut(s) | 572 |
| BshNI | GGYRCC | 1 cut(s) | 3139 |
| BshVI | ATCGAT | 1 cut(s) | 3812 |
| BsiEI | CGRYCG | 1 cut(s) | 572 |
| BsiHKAI | GWGCWC | 4 cut(s) | 3771, 4042, 4368, 4779 |
| BsiSI | CCGG | 6 cut(s) | 880, 2151, 2339, 2358, 3335, 4505 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 508, 623, 2071, 4127, 4172, 4704 |
| BsmAI | GTCTC | 9 cut(s) | 374, 1220, 1246, 1370, 2005, 3482, 4111, 4331, 4334 |
| BsmBI | CGTCTC | 1 cut(s) | 2005 |
| BsmI | GAATGC | 2 cut(s) | 48, 1027 |
| Bso31I | GGTCTC | 3 cut(s) | 1220, 4111, 4334 |
| Bsp119I | TTCGAA | 2 cut(s) | 2368, 2456 |
| Bsp1286I | GDGCHC | 6 cut(s) | 3771, 4042, 4368, 4674, 4710, 4779 |
| Bsp1407I | TGTACA | 2 cut(s) | 2750, 4054 |
| Bsp19I | CCATGG | 1 cut(s) | 4324 |
| BspACI | CCGC | 8 cut(s) | 127, 157, 1261, 2597, 3322, 3820, 4693, 4729 |
| BspCNI | CTCAG | 9 cut(s) | 64, 264, 738, 982, 1959, 1981, 2419, 3100, 4344 |
| BspDI | ATCGAT | 1 cut(s) | 3812 |
| BspFNI | CGCG | 3 cut(s) | 2292, 2597, 4731 |
| BspHI | TCATGA | 1 cut(s) | 3229 |
| BspLI | GGNNCC | 6 cut(s) | 786, 2474, 3141, 3423, 3570, 4245 |
| BspMAI | CTGCAG | 4 cut(s) | 3037, 3678, 3847, 4321 |
| BspMI | ACCTGC | 1 cut(s) | 3026 |
| BspPI | GGATC | 7 cut(s) | 19, 333, 779, 792, 1311, 2196, 4014 |
| BspT104I | TTCGAA | 2 cut(s) | 2368, 2456 |
| BspT107I | GGYRCC | 1 cut(s) | 3139 |
| BspTI | CTTAAG | 1 cut(s) | 2309 |
| BspTNI | GGTCTC | 3 cut(s) | 1220, 4111, 4334 |
| BsrDI | GCAATG | 1 cut(s) | 1042 |
| BsrGI | TGTACA | 2 cut(s) | 2750, 4054 |
| BsrI | ACTGG | 9 cut(s) | 179, 502, 772, 867, 956, 1619, 2169, 3732, 4212 |
| BssECI | CCNNGG | 7 cut(s) | 502, 503, 2253, 3010, 4324, 4383, 4702 |
| BssNAI | GTATAC | 1 cut(s) | 372 |
| BssNI | GRCGYC | 1 cut(s) | 2017 |
| BssSI | CACGAG | 1 cut(s) | 4404 |
| BssT1I | CCWWGG | 3 cut(s) | 3010, 4324, 4702 |
| Bst1107I | GTATAC | 1 cut(s) | 372 |
| Bst2BI | CACGAG | 1 cut(s) | 4404 |
| Bst2UI | CCWGG | 6 cut(s) | 504, 1193, 1714, 2186, 2799, 4384 |
| Bst4CI | ACNGT | 7 cut(s) | 2417, 2499, 2677, 3331, 3946, 4309, 4342 |
| Bst6I | CTCTTC | 2 cut(s) | 3354, 3882 |
| BstACI | GRCGYC | 1 cut(s) | 2017 |
| BstAFI | CTTAAG | 1 cut(s) | 2309 |
| BstAUI | TGTACA | 2 cut(s) | 2750, 4054 |
| BstBAI | YACGTR | 2 cut(s) | 2981, 3605 |
| BstBI | TTCGAA | 2 cut(s) | 2368, 2456 |
| BstDSI | CCRYGG | 1 cut(s) | 4324 |
| BstEII | GGTNACC | 1 cut(s) | 4465 |
| BstFNI | CGCG | 3 cut(s) | 2292, 2597, 4731 |
| BstH2I | RGCGCY | 1 cut(s) | 303 |
| BstHHI | GCGC | 4 cut(s) | 302, 2292, 4093, 4733 |
| BstMAI | GTCTC | 9 cut(s) | 374, 1220, 1246, 1370, 2005, 3482, 4111, 4331, 4334 |
| BstMCI | CGRYCG | 1 cut(s) | 572 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 82, 1143, 2984, 4037 |
| BstNI | CCWGG | 6 cut(s) | 504, 1193, 1714, 2186, 2799, 4384 |
| BstNSI | RCATGY | 7 cut(s) | 322, 1573, 1577, 1755, 2102, 2547, 4091 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2302 |
| BstPI | GGTNACC | 1 cut(s) | 4465 |
| BstSCI | CCNGG | 7 cut(s) | 502, 1191, 1712, 2149, 2184, 2797, 4382 |
| BstSLI | GKGCMC | 2 cut(s) | 4674, 4710 |
| BstUI | CGCG | 3 cut(s) | 2292, 2597, 4731 |
| BstV1I | GCAGC | 7 cut(s) | 2712, 3367, 3559, 3835, 3857, 4043, 4570 |
| BstV2I | GAAGAC | 6 cut(s) | 281, 770, 950, 1415, 1617, 4161 |
| BstX2I | RGATCY | 6 cut(s) | 24, 325, 784, 1303, 2024, 4019 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 664, 3501, 3695 |
| BstYI | RGATCY | 6 cut(s) | 24, 325, 784, 1303, 2024, 4019 |
| BstZ17I | GTATAC | 1 cut(s) | 372 |
| Bsu15I | ATCGAT | 1 cut(s) | 3812 |
| BsuI | GTATCC | 1 cut(s) | 1900 |
| BsuTUI | ATCGAT | 1 cut(s) | 3812 |
| BtgI | CCRYGG | 1 cut(s) | 4324 |
| BtgZI | GCGATG | 1 cut(s) | 3606 |
| BtsI | GCAGTG | 2 cut(s) | 3840, 4195 |
| BtsIMutI | CAGTG | 7 cut(s) | 495, 1903, 1954, 2495, 2922, 3840, 4195 |
| BveI | ACCTGC | 1 cut(s) | 3026 |
| CaiI | CAGNNNCTG | 1 cut(s) | 4223 |
| CciI | TCATGA | 1 cut(s) | 3229 |
| CfoI | GCGC | 4 cut(s) | 302, 2292, 4093, 4733 |
| Cfr13I | GGNCC | 7 cut(s) | 500, 644, 1040, 1710, 2297, 2473, 2801 |
| ClaI | ATCGAT | 1 cut(s) | 3812 |
| CseI | GACGC | 1 cut(s) | 2025 |
| DraIII | CACNNNGTG | 1 cut(s) | 1949 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1619 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1233 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1619 |
| EaeI | YGGCCR | 5 cut(s) | 1258, 2136, 2985, 3244, 3319 |
| Eam1104I | CTCTTC | 2 cut(s) | 3354, 3882 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1233 |
| EarI | CTCTTC | 2 cut(s) | 3354, 3882 |
| Ecl136II | GAGCTC | 4 cut(s) | 3769, 4040, 4366, 4777 |
| Eco130I | CCWWGG | 3 cut(s) | 3010, 4324, 4702 |
| Eco147I | AGGCCT | 2 cut(s) | 1855, 4165 |
| Eco24I | GRGCYC | 4 cut(s) | 3771, 4042, 4368, 4779 |
| Eco31I | GGTCTC | 3 cut(s) | 1220, 4111, 4334 |
| Eco32I | GATATC | 1 cut(s) | 4180 |
| Eco47I | GGWCC | 6 cut(s) | 644, 1040, 1710, 2297, 2473, 2801 |
| Eco47III | AGCGCT | 1 cut(s) | 301 |
| Eco53kI | GAGCTC | 4 cut(s) | 3769, 4040, 4366, 4777 |
| Eco91I | GGTNACC | 1 cut(s) | 4465 |
| EcoICRI | GAGCTC | 4 cut(s) | 3769, 4040, 4366, 4777 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1710, 2297, 2473 |
| EcoO65I | GGTNACC | 1 cut(s) | 4465 |
| EcoRII | CCWGG | 6 cut(s) | 502, 1191, 1712, 2184, 2797, 4382 |
| EcoRV | GATATC | 1 cut(s) | 4180 |
| EcoT14I | CCWWGG | 3 cut(s) | 3010, 4324, 4702 |
| EcoT22I | ATGCAT | 3 cut(s) | 1575, 3005, 4089 |
| EcoT38I | GRGCYC | 4 cut(s) | 3771, 4042, 4368, 4779 |
| ErhI | CCWWGG | 3 cut(s) | 3010, 4324, 4702 |
| Esp3I | CGTCTC | 1 cut(s) | 2005 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 273, 305 |
| FauNDI | CATATG | 3 cut(s) | 1117, 2728, 3255 |
| FbaI | TGATCA | 5 cut(s) | 2485, 2893, 3454, 4563, 4593 |
| FblI | GTMKAC | 2 cut(s) | 371, 3066 |
| Fnu4HI | GCNGC | 9 cut(s) | 1261, 2701, 3322, 3381, 3548, 3846, 3849, 4032, 4559 |
| FriOI | GRGCYC | 4 cut(s) | 3771, 4042, 4368, 4779 |
| Fsp4HI | GCNGC | 9 cut(s) | 1261, 2701, 3322, 3381, 3548, 3846, 3849, 4032, 4559 |
| FspBI | CTAG | 6 cut(s) | 200, 1418, 2969, 3870, 3954, 4788 |
| GlaI | GCGC | 4 cut(s) | 301, 2291, 4092, 4732 |
| GluI | GCNGC | 9 cut(s) | 1261, 2701, 3322, 3381, 3548, 3846, 3849, 4032, 4559 |
| GsuI | CTGGAG | 4 cut(s) | 1089, 1214, 2106, 4056 |
| HaeII | RGCGCY | 1 cut(s) | 303 |
| HapII | CCGG | 6 cut(s) | 880, 2151, 2339, 2358, 3335, 4505 |
| HgaI | GACGC | 1 cut(s) | 2025 |
| HhaI | GCGC | 4 cut(s) | 302, 2292, 4093, 4733 |
| Hin1I | GRCGYC | 1 cut(s) | 2017 |
| Hin6I | GCGC | 4 cut(s) | 300, 2290, 4091, 4731 |
| HinP1I | GCGC | 4 cut(s) | 300, 2290, 4091, 4731 |
| HincII | GTYRAC | 5 cut(s) | 469, 2236, 3196, 4398, 4587 |
| HindII | GTYRAC | 5 cut(s) | 469, 2236, 3196, 4398, 4587 |
| HindIII | AAGCTT | 1 cut(s) | 823 |
| HpaI | GTTAAC | 1 cut(s) | 2236 |
| HpaII | CCGG | 6 cut(s) | 880, 2151, 2339, 2358, 3335, 4505 |
| Hpy99I | CGWCG | 1 cut(s) | 2019 |
| HpyCH4III | ACNGT | 7 cut(s) | 2417, 2499, 2677, 3331, 3946, 4309, 4342 |
| HpyCH4IV | ACGT | 4 cut(s) | 123, 2980, 3147, 3604 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 82, 1143, 2984, 4037 |
| HpySE526I | ACGT | 4 cut(s) | 123, 2980, 3147, 3604 |
| Hsp92I | GRCGYC | 1 cut(s) | 2017 |
| HspAI | GCGC | 4 cut(s) | 300, 2290, 4091, 4731 |
| Ksp22I | TGATCA | 5 cut(s) | 2485, 2893, 3454, 4563, 4593 |
| KspAI | GTTAAC | 1 cut(s) | 2236 |
| LmnI | GCTCC | 7 cut(s) | 1748, 3442, 3580, 4037, 4249, 4371, 4486 |
| Lsp1109I | GCAGC | 7 cut(s) | 2712, 3367, 3559, 3835, 3857, 4043, 4570 |
| MaeI | CTAG | 6 cut(s) | 200, 1418, 2969, 3870, 3954, 4788 |
| MaeII | ACGT | 4 cut(s) | 123, 2980, 3147, 3604 |
| MfeI | CAATTG | 4 cut(s) | 1334, 1788, 2037, 4597 |
| MflI | RGATCY | 6 cut(s) | 24, 325, 784, 1303, 2024, 4019 |
| MhlI | GDGCHC | 6 cut(s) | 3771, 4042, 4368, 4674, 4710, 4779 |
| MlsI | TGGCCA | 2 cut(s) | 2138, 3246 |
| MluNI | TGGCCA | 2 cut(s) | 2138, 3246 |
| MlyI | GAGTC | 5 cut(s) | 757, 2417, 3484, 3533, 3548 |
| MmeI | TCCRAC | 6 cut(s) | 1421, 2052, 2443, 3096, 4662, 4698 |
| Mox20I | TGGCCA | 2 cut(s) | 2138, 3246 |
| Mph1103I | ATGCAT | 3 cut(s) | 1575, 3005, 4089 |
| MroXI | GAANNNNTTC | 1 cut(s) | 3297 |
| MscI | TGGCCA | 2 cut(s) | 2138, 3246 |
| MslI | CAYNNNNRTG | 6 cut(s) | 456, 1572, 2403, 2937, 3411, 3693 |
| Msp20I | TGGCCA | 2 cut(s) | 2138, 3246 |
| MspA1I | CMGCKG | 4 cut(s) | 3324, 3848, 4034, 4561 |
| MspCI | CTTAAG | 1 cut(s) | 2309 |
| MspI | CCGG | 6 cut(s) | 880, 2151, 2339, 2358, 3335, 4505 |
| MspR9I | CCNGG | 7 cut(s) | 504, 1193, 1714, 2151, 2186, 2799, 4384 |
| MunI | CAATTG | 4 cut(s) | 1334, 1788, 2037, 4597 |
| Mva1269I | GAATGC | 2 cut(s) | 48, 1027 |
| MvaI | CCWGG | 6 cut(s) | 504, 1193, 1714, 2186, 2799, 4384 |
| MvnI | CGCG | 3 cut(s) | 2292, 2597, 4731 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 82, 1143, 2984, 4037 |
| NciI | CCSGG | 1 cut(s) | 2151 |
| NcoI | CCATGG | 1 cut(s) | 4324 |
| NdeI | CATATG | 3 cut(s) | 1117, 2728, 3255 |
| NlaIV | GGNNCC | 6 cut(s) | 786, 2474, 3141, 3423, 3570, 4245 |
| NmeAIII | GCCGAG | 1 cut(s) | 2278 |
| NmuCI | GTSAC | 8 cut(s) | 263, 2304, 3028, 3525, 3540, 4190, 4309, 4615 |
| NsiI | ATGCAT | 3 cut(s) | 1575, 3005, 4089 |
| NspI | RCATGY | 7 cut(s) | 322, 1573, 1577, 1755, 2102, 2547, 4091 |
| NspV | TTCGAA | 2 cut(s) | 2368, 2456 |
| PaeI | GCATGC | 3 cut(s) | 1577, 2102, 4091 |
| PagI | TCATGA | 1 cut(s) | 3229 |
| PasI | CCCWGGG | 1 cut(s) | 503 |
| PceI | AGGCCT | 2 cut(s) | 1855, 4165 |
| PciI | ACATGT | 1 cut(s) | 318 |
| PctI | GAATGC | 2 cut(s) | 48, 1027 |
| PdmI | GAANNNNTTC | 1 cut(s) | 3297 |
| PflFI | GACNNNGTC | 1 cut(s) | 4223 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 623, 2071 |
| PfoI | TCCNGGA | 2 cut(s) | 1191, 2797 |
| PkrI | GCNGC | 9 cut(s) | 1262, 2702, 3323, 3382, 3549, 3847, 3850, 4033, 4560 |
| Ple19I | CGATCG | 1 cut(s) | 572 |
| PleI | GAGTC | 5 cut(s) | 756, 2416, 3484, 3532, 3547 |
| PpsI | GAGTC | 5 cut(s) | 756, 2416, 3484, 3532, 3547 |
| Ppu21I | YACGTR | 2 cut(s) | 2981, 3605 |
| PpuMI | RGGWCCY | 3 cut(s) | 1710, 2297, 2473 |
| PscI | ACATGT | 1 cut(s) | 318 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2302 |
| PsiI | TTATAA | 1 cut(s) | 1506 |
| Psp124BI | GAGCTC | 4 cut(s) | 3771, 4042, 4368, 4779 |
| Psp5II | RGGWCCY | 3 cut(s) | 1710, 2297, 2473 |
| Psp6I | CCWGG | 6 cut(s) | 502, 1191, 1712, 2184, 2797, 4382 |
| PspEI | GGTNACC | 1 cut(s) | 4465 |
| PspGI | CCWGG | 6 cut(s) | 502, 1191, 1712, 2184, 2797, 4382 |
| PspN4I | GGNNCC | 6 cut(s) | 786, 2474, 3141, 3423, 3570, 4245 |
| PspPI | GGNCC | 7 cut(s) | 500, 644, 1040, 1710, 2297, 2473, 2801 |
| PspPPI | RGGWCCY | 3 cut(s) | 1710, 2297, 2473 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 4092, 4124 |
| PstI | CTGCAG | 4 cut(s) | 3037, 3678, 3847, 4321 |
| PstNI | CAGNNNCTG | 1 cut(s) | 4223 |
| PsuI | RGATCY | 6 cut(s) | 24, 325, 784, 1303, 2024, 4019 |
| PsyI | GACNNNGTC | 1 cut(s) | 4223 |
| PvuI | CGATCG | 1 cut(s) | 572 |
| PvuII | CAGCTG | 3 cut(s) | 3848, 4034, 4561 |
| RseI | CAYNNNNRTG | 6 cut(s) | 456, 1572, 2403, 2937, 3411, 3693 |
| SacI | GAGCTC | 4 cut(s) | 3771, 4042, 4368, 4779 |
| SatI | GCNGC | 9 cut(s) | 1261, 2701, 3322, 3381, 3548, 3846, 3849, 4032, 4559 |
| Sau96I | GGNCC | 7 cut(s) | 500, 644, 1040, 1710, 2297, 2473, 2801 |
| ScaI | AGTACT | 2 cut(s) | 2655, 3952 |
| SchI | GAGTC | 5 cut(s) | 757, 2417, 3484, 3533, 3548 |
| ScrFI | CCNGG | 7 cut(s) | 504, 1193, 1714, 2151, 2186, 2799, 4384 |
| SduI | GDGCHC | 6 cut(s) | 3771, 4042, 4368, 4674, 4710, 4779 |
| SfuI | TTCGAA | 2 cut(s) | 2368, 2456 |
| SinI | GGWCC | 6 cut(s) | 644, 1040, 1710, 2297, 2473, 2801 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 456, 1572, 2403, 2937, 3411, 3693 |
| SmlI | CTYRAG | 5 cut(s) | 1307, 1472, 2103, 2309, 4043 |
| SmoI | CTYRAG | 5 cut(s) | 1307, 1472, 2103, 2309, 4043 |
| SpeI | ACTAGT | 1 cut(s) | 3953 |
| SphI | GCATGC | 3 cut(s) | 1577, 2102, 4091 |
| SseBI | AGGCCT | 2 cut(s) | 1855, 4165 |
| SsiI | CCGC | 8 cut(s) | 127, 157, 1261, 2597, 3322, 3820, 4693, 4729 |
| SspMI | CTAG | 6 cut(s) | 200, 1418, 2969, 3870, 3954, 4788 |
| SstI | GAGCTC | 4 cut(s) | 3771, 4042, 4368, 4779 |
| StuI | AGGCCT | 2 cut(s) | 1855, 4165 |
| StyD4I | CCNGG | 7 cut(s) | 502, 1191, 1712, 2149, 2184, 2797, 4382 |
| StyI | CCWWGG | 3 cut(s) | 3010, 4324, 4702 |
| TaaI | ACNGT | 7 cut(s) | 2417, 2499, 2677, 3331, 3946, 4309, 4342 |
| TaiI | ACGT | 4 cut(s) | 126, 2983, 3150, 3607 |
| TaqI | TCGA | 9 cut(s) | 1406, 1840, 2368, 2456, 2965, 3301, 3812, 4132, 4529 |
| TaqII | GACCGA | 1 cut(s) | 741 |
| TatI | WGTACW | 7 cut(s) | 2196, 2653, 2750, 3326, 3860, 3950, 4054 |
| TauI | GCSGC | 2 cut(s) | 1263, 3324 |
| TscAI | CASTG | 7 cut(s) | 502, 1903, 1954, 2502, 2929, 3847, 4195 |
| TseFI | GTSAC | 8 cut(s) | 263, 2304, 3028, 3525, 3540, 4190, 4309, 4615 |
| TseI | GCWGC | 7 cut(s) | 2700, 3380, 3547, 3845, 3848, 4031, 4558 |
| Tsp45I | GTSAC | 8 cut(s) | 263, 2304, 3028, 3525, 3540, 4190, 4309, 4615 |
| TspGWI | ACGGA | 1 cut(s) | 594 |
| TspRI | CASTG | 7 cut(s) | 502, 1903, 1954, 2502, 2929, 3847, 4195 |
| Tth111I | GACNNNGTC | 1 cut(s) | 4223 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 623, 2071 |
| Vha464I | CTTAAG | 1 cut(s) | 2309 |
| VpaK11BI | GGWCC | 6 cut(s) | 644, 1040, 1710, 2297, 2473, 2801 |
| XbaI | TCTAGA | 2 cut(s) | 199, 3869 |
| XceI | RCATGY | 7 cut(s) | 322, 1573, 1577, 1755, 2102, 2547, 4091 |
| XmiI | GTMKAC | 2 cut(s) | 371, 3066 |
| XmnI | GAANNNNTTC | 1 cut(s) | 3297 |
| XspI | CTAG | 6 cut(s) | 200, 1418, 2969, 3870, 3954, 4788 |
| ZrmI | AGTACT | 2 cut(s) | 2655, 3952 |
| Zsp2I | ATGCAT | 3 cut(s) | 1575, 3005, 4089 |