Rh6BG203500

gamma-irradiation and mitomycin c induced

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001133
Physical Location & Seq
Reverse (-)
38351012 .. 38353919
2908 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG203500.1

Sequence Viewer

Length: 327 bp
ATGACAGTTTCAAATAGGATTGCAGCTTGCAAAAGCCTTGGAGCTTTACTGATCGCTACTGACCTTCAGTCAAGTAGTTTAAAGGTGCCTGACGTTTGCGTGGCTGGTACTCAAATGGAAAATATGGTTTTTGAAATTGTCAGCTCTGATGGTGTTGTTGATGATACTATTCATCATGACGAGAAAAGTGGCCAATTACATATAGCTACAATAATGGCCGGTTCATCATCCATGGAGGAATCCCTTCGATACACATTCAAGCATGGACGCTGTACAATACCAAGACCCCCACACCCTACCTCGAAGAGTAGGGACTTATTATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HATPase_c_3

Protein Analysis

108

Amino Acids

11.73

Weight (kDa)

6.16

Isoelectric Point (pI)

41.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 85
AcoI YGGCCR 2 cut(s) 190, 216
AcuI CTGAAG 1 cut(s) 50
AfaI GTAC 2 cut(s) 109, 274
AgsI TTSAA 3 cut(s) 12, 134, 259
AhdI GACNNNNNGTC 1 cut(s) 67
AluBI AGCT 4 cut(s) 26, 44, 144, 206
AluI AGCT 4 cut(s) 26, 44, 144, 206
AoxI GGCC 2 cut(s) 190, 216
ApeKI GCWGC 1 cut(s) 23
Asp700I GAANNNNTTC 1 cut(s) 243
BalI TGGCCA 1 cut(s) 192
BanI GGYRCC 1 cut(s) 85
BbvI GCAGC 1 cut(s) 35
BccI CCATC 1 cut(s) 143
BisI GCNGC 1 cut(s) 24
BlsI GCNGC 1 cut(s) 25
BmeRI GACNNNNNGTC 1 cut(s) 67
BmiI GGNNCC 1 cut(s) 87
BsaJI CCNNGG 2 cut(s) 37, 231
Bse118I RCCGGY 1 cut(s) 218
BseDI CCNNGG 2 cut(s) 37, 231
BseGI GGATG 1 cut(s) 227
BseXI GCAGC 1 cut(s) 35
BshFI GGCC 2 cut(s) 192, 218
BshNI GGYRCC 1 cut(s) 85
BsiSI CCGG 1 cut(s) 219
BsnI GGCC 2 cut(s) 192, 218
Bsp1407I TGTACA 1 cut(s) 272
Bsp143I GATC 1 cut(s) 51
Bsp19I CCATGG 1 cut(s) 231
BspANI GGCC 2 cut(s) 192, 218
BspHI TCATGA 1 cut(s) 175
BspLI GGNNCC 1 cut(s) 87
BspT107I GGYRCC 1 cut(s) 85
BsrFI RCCGGY 1 cut(s) 218
BsrGI TGTACA 1 cut(s) 272
BssAI RCCGGY 1 cut(s) 218
BssECI CCNNGG 2 cut(s) 37, 231
BssMI GATC 1 cut(s) 51
BssT1I CCWWGG 2 cut(s) 37, 231
Bst4CI ACNGT 1 cut(s) 7
Bst6I CTCTTC 1 cut(s) 299
BstAUI TGTACA 1 cut(s) 272
BstC8I GCNNGC 1 cut(s) 28
BstDSI CCRYGG 1 cut(s) 231
BstF5I GGATG 1 cut(s) 227
BstKTI GATC 1 cut(s) 54
BstMBI GATC 1 cut(s) 51
BstV1I GCAGC 1 cut(s) 35
BsuRI GGCC 2 cut(s) 192, 218
BtgI CCRYGG 1 cut(s) 231
BtsCI GGATG 1 cut(s) 227
Cac8I GCNNGC 1 cut(s) 28
CciI TCATGA 1 cut(s) 175
Cfr10I RCCGGY 1 cut(s) 218
CseI GACGC 1 cut(s) 276
Csp6I GTAC 2 cut(s) 108, 273
CviAII CATG 3 cut(s) 176, 232, 263
CviJI RGCY 8 cut(s) 26, 36, 44, 104, 144, 192, 206, 218
CviKI_1 RGCY 8 cut(s) 26, 36, 44, 104, 144, 192, 206, 218
CviQI GTAC 2 cut(s) 108, 273
DpnI GATC 1 cut(s) 53
DpnII GATC 1 cut(s) 51
DraI TTTAAA 1 cut(s) 81
DriI GACNNNNNGTC 1 cut(s) 67
EaeI YGGCCR 2 cut(s) 190, 216
Eam1104I CTCTTC 1 cut(s) 299
Eam1105I GACNNNNNGTC 1 cut(s) 67
EarI CTCTTC 1 cut(s) 299
Eco130I CCWWGG 2 cut(s) 37, 231
Eco57I CTGAAG 1 cut(s) 50
EcoT14I CCWWGG 2 cut(s) 37, 231
ErhI CCWWGG 2 cut(s) 37, 231
FaeI CATG 3 cut(s) 179, 235, 266
FaiI YATR 7 cut(s) 125, 177, 201, 203, 233, 264, 322
FatI CATG 3 cut(s) 175, 231, 262
Fnu4HI GCNGC 1 cut(s) 24
FokI GGATG 1 cut(s) 214
Fsp4HI GCNGC 1 cut(s) 24
GluI GCNGC 1 cut(s) 24
HaeIII GGCC 2 cut(s) 192, 218
HapII CCGG 1 cut(s) 219
HgaI GACGC 1 cut(s) 276
Hin1II CATG 3 cut(s) 179, 235, 266
HinfI GANTC 1 cut(s) 239
HpaII CCGG 1 cut(s) 219
Hpy188I TCNGA 1 cut(s) 148
Hpy188III TCNNGA 1 cut(s) 176
HpyAV CCTTC 2 cut(s) 74, 254
HpyCH4III ACNGT 1 cut(s) 7
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 2 cut(s) 23, 30
HpySE526I ACGT 1 cut(s) 93
Hsp92II CATG 3 cut(s) 179, 235, 266
Kzo9I GATC 1 cut(s) 51
LmnI GCTCC 1 cut(s) 41
LpnPI CCDG 3 cut(s) 90, 102, 232
Lsp1109I GCAGC 1 cut(s) 35
MaeII ACGT 1 cut(s) 93
MalI GATC 1 cut(s) 53
MboI GATC 1 cut(s) 51
MboII GAAGA 1 cut(s) 316
MlsI TGGCCA 1 cut(s) 192
MluCI AATT 2 cut(s) 135, 194
MluNI TGGCCA 1 cut(s) 192
MnlI CCTC 2 cut(s) 229, 310
Mox20I TGGCCA 1 cut(s) 192
MroXI GAANNNNTTC 1 cut(s) 243
MscI TGGCCA 1 cut(s) 192
MseI TTAA 2 cut(s) 80, 325
Msp20I TGGCCA 1 cut(s) 192
MspI CCGG 1 cut(s) 219
NcoI CCATGG 1 cut(s) 231
NdeII GATC 1 cut(s) 51
NlaIII CATG 3 cut(s) 179, 235, 266
NlaIV GGNNCC 1 cut(s) 87
PagI TCATGA 1 cut(s) 175
PdmI GAANNNNTTC 1 cut(s) 243
PfeI GAWTC 1 cut(s) 239
PkrI GCNGC 1 cut(s) 25
PspN4I GGNNCC 1 cut(s) 87
RsaI GTAC 2 cut(s) 109, 274
RsaNI GTAC 2 cut(s) 108, 273
SaqAI TTAA 2 cut(s) 80, 325
SatI GCNGC 1 cut(s) 24
Sau3AI GATC 1 cut(s) 51
SetI ASST 8 cut(s) 28, 46, 66, 87, 96, 146, 208, 302
Sse9I AATT 2 cut(s) 135, 194
StyI CCWWGG 2 cut(s) 37, 231
TaaI ACNGT 1 cut(s) 7
TaiI ACGT 1 cut(s) 96
TaqI TCGA 2 cut(s) 247, 302
TasI AATT 2 cut(s) 135, 194
TatI WGTACW 1 cut(s) 272
TfiI GAWTC 1 cut(s) 239
Tru1I TTAA 2 cut(s) 80, 325
Tru9I TTAA 2 cut(s) 80, 325
TseI GCWGC 1 cut(s) 23
TspDTI ATGAA 2 cut(s) 161, 213
XmnI GAANNNNTTC 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.