Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001133

Physical Location & Seq

Genomic Coordinates Forward (+)

52334613 .. 52338761

Gene Structure 4149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0422300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGTGCAGAATCATGAGGCTTCCTCTAATTTGAAGCCGGTAATGATGATGGTGGTTACCCAGATTTTGTATACTGTGATGAACATAATGTACAAACTAGTTGCAGTAACAGGGATGAACTTGAATGTTTTCGTTGCCTACCGACTGATGTTTTCAGCGGCGTTTATGGTTCCACTGGCTCTGATACTTGAGAGGAAGAGAAGGCCAAAACTTACTTGGGTTGTGTTGTTTCAAGCTTTTCTCTGCGGCCTAATTATGGCTGCCGCGACACAAAACTTATATGTTGTGAGTCTAGCGCTGACGTCACCCACATTTCTTGCAGCCATCTCCAATCTCCTCCCAGCCATTACCTTCGTGGTTGCTCTATGTTTTCGGCAGGAGAAGTTGACCTTGGGATATTCCGGCATAGCCAAAATTGTTGGGACCGTGGTTGGGATAGGAGGAGCAATGCTTTTTACTTTCTACCGTGGACCTGTATTTACCATTTGGTCCACTCATATTGACCTTCTACGGCAATATCACAACACTAGTAGCGTCTCATCCTCAGGCCACAAGAACAATCCTGCGTTGGGCTTCCTGGCAGGCTTCGGCAGCATCTTATGCTTCGGAATATGGCTCACAGTTCAGGCGAAGATGAGCAAGAGATATCCCTGTCCTTACTCGAGCACGGCTTTGATGTGCATCATGGGATCCATCCAGTCCGTTATTTTTGCGCTTTGCATGGAGAGAGATTGGAATCAATGGAAGATGCACTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c_3

Protein Analysis

252

Amino Acids

28.09

Weight (kDa)

9.72

Isoelectric Point (pI)

43.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	14 - 153	2.6e-10	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24275 AT5G24275 AT5G24275 AT5G24275 AT5G24280 AT5G24280 AT5G24280
fragaria_vesca	FvH4_7g31550 FvH4_7g31550 FvH4_7g32260
malus_domestica	MD07G1288100.v1.1
prunus_persica	Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1
pyrus_communis	pycom07g26090
rosa_chinensis	RchiOBHm_Chr1g0380531 RchiOBHm_Chr1g0381531
rosa_laevigata	RLG00000026287
rosa_multiflora	Rmu_co8450373.1_g000001 Rmu_sc0000701.1_g000020 Rmu_sc0002045.1_g000020 Rmu_sc0010633.1_g000011 Rmu_ssc0000015.1_g000008
rosa_roxburghii	Rroxscaffold_4G00279220
rosa_rugosa	Rorug01G0422200 Rorug01G0422300 Rorug06G0084200
rosa_samantha	Rh1AG446800 Rh1BG402100 Rh1CG416300 Rh1CG424300 Rh1DG432300 Rh2DG318300 Rh3BG122000 Rh5AG085500 Rh5AG170300 Rh5BG265400 Rh6AG200100 Rh6AG200300 Rh6AG200400 Rh6BG025800 Rh6BG203500 Rh6BG203600 Rh6BG203800 Rh6CG203700 Rh6CG203800 Rh6CG204000 Rh6DG195200
rosa_wichuraiana	Rw1G038870 Rw1G039500 Rw6G017380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	305
AccI	GTMKAC	1 cut(s)	71
AccII	CGCG	1 cut(s)	266
AciI	CCGC	3 cut(s)	158, 246, 264
AclWI	GGATC	2 cut(s)	684, 697
AcyI	GRCGYC	1 cut(s)	302
AfaI	GTAC	1 cut(s)	92
AfeI	AGCGCT	1 cut(s)	297
AfiI	CCNNNNNNNGG	3 cut(s)	256, 432, 569
AgsI	TTSAA	3 cut(s)	34, 124, 233
AhlI	ACTAGT	2 cut(s)	97, 527
AjnI	CCWGG	1 cut(s)	576
AjuI	GAANNNNNNNTTGG	2 cut(s)	374, 406
AluBI	AGCT	1 cut(s)	236
AluI	AGCT	1 cut(s)	236
Alw21I	GWGCWC	1 cut(s)	668
Alw26I	GTCTC	1 cut(s)	541
AlwI	GGATC	2 cut(s)	684, 697
Ama87I	CYCGRG	1 cut(s)	661
Aor51HI	AGCGCT	1 cut(s)	297
AoxI	GGCC	3 cut(s)	203, 247, 547
ApeKI	GCWGC	3 cut(s)	260, 320, 591
Asp700I	GAANNNNTTC	1 cut(s)	128
AspLEI	GCGC	2 cut(s)	298, 715
AspS9I	GGNCC	3 cut(s)	423, 470, 489
AsuHPI	GGTGA	1 cut(s)	297
AvaI	CYCGRG	1 cut(s)	661
AvaII	GGWCC	3 cut(s)	423, 470, 489
AxyI	CCTNAGG	1 cut(s)	544
BamHI	GGATCC	1 cut(s)	689
BarI	GAAGNNNNNNTAC	1 cut(s)	737
Bbv12I	GWGCWC	1 cut(s)	668
BbvI	GCAGC	3 cut(s)	247, 332, 603
BccI	CCATC	3 cut(s)	43, 332, 701
BceAI	ACGGC	2 cut(s)	527, 684
BciT130I	CCWGG	1 cut(s)	578
BcoDI	GTCTC	1 cut(s)	541
BcuI	ACTAGT	2 cut(s)	97, 527
BfaI	CTAG	3 cut(s)	98, 293, 528
BfoI	RGCGCY	1 cut(s)	299
BisI	GCNGC	6 cut(s)	159, 247, 261, 264, 321, 592
BlsI	GCNGC	6 cut(s)	160, 248, 262, 265, 322, 593
Bme1390I	CCNGG	1 cut(s)	578
Bme18I	GGWCC	3 cut(s)	423, 470, 489
BmeT110I	CYCGRG	1 cut(s)	661
BmgT120I	GGNCC	3 cut(s)	423, 470, 489
BmiI	GGNNCC	3 cut(s)	171, 424, 691
BmrFI	CCNGG	1 cut(s)	578
BmsI	GCATC	3 cut(s)	603, 690, 738
BplI	GAGNNNNNCTC	2 cut(s)	8, 40
BpuEI	CTTGAG	1 cut(s)	209
BsaBI	GATNNNNATC	2 cut(s)	680, 735
BsaHI	GRCGYC	1 cut(s)	302
BsaJI	CCNNGG	3 cut(s)	390, 426, 466
Bsc4I	CCNNNNNNNGG	3 cut(s)	256, 432, 569
Bse118I	RCCGGY	1 cut(s)	37
Bse1I	ACTGG	2 cut(s)	180, 697
Bse21I	CCTNAGG	1 cut(s)	544
Bse3DI	GCAATG	1 cut(s)	453
Bse8I	GATNNNNATC	2 cut(s)	680, 735
BseBI	CCWGG	1 cut(s)	578
BseDI	CCNNGG	3 cut(s)	390, 426, 466
BseGI	GGATG	3 cut(s)	120, 539, 693
BseJI	GATNNNNATC	2 cut(s)	680, 735
BseLI	CCNNNNNNNGG	3 cut(s)	256, 432, 569
BseMI	GCAATG	1 cut(s)	453
BseMII	CTCAG	1 cut(s)	558
BseNI	ACTGG	2 cut(s)	180, 697
BseRI	GAGGAG	2 cut(s)	326, 456
BseXI	GCAGC	3 cut(s)	247, 332, 603
BseYI	CCCAGC	1 cut(s)	340
BsgI	GTGCAG	1 cut(s)	26
Bsh1236I	CGCG	1 cut(s)	266
BshFI	GGCC	3 cut(s)	205, 249, 549
BsiHKAI	GWGCWC	1 cut(s)	668
BsiHKCI	CYCGRG	1 cut(s)	661
BsiSI	CCGG	2 cut(s)	38, 402
BslFI	GGGAC	1 cut(s)	436
BslI	CCNNNNNNNGG	3 cut(s)	256, 432, 569
BsmAI	GTCTC	1 cut(s)	541
BsmBI	CGTCTC	1 cut(s)	541
BsmFI	GGGAC	1 cut(s)	436
BsnI	GGCC	3 cut(s)	205, 249, 549
BsoBI	CYCGRG	1 cut(s)	661
Bsp1286I	GDGCHC	1 cut(s)	668
Bsp1407I	TGTACA	1 cut(s)	90
Bsp143I	GATC	1 cut(s)	689
BspACI	CCGC	3 cut(s)	158, 246, 264
BspANI	GGCC	3 cut(s)	205, 249, 549
BspCNI	CTCAG	1 cut(s)	557
BspFNI	CGCG	1 cut(s)	266
BspHI	TCATGA	1 cut(s)	13
BspLI	GGNNCC	3 cut(s)	171, 424, 691
BspPI	GGATC	2 cut(s)	684, 697
BsrDI	GCAATG	1 cut(s)	453
BsrFI	RCCGGY	1 cut(s)	37
BsrGI	TGTACA	1 cut(s)	90
BsrI	ACTGG	2 cut(s)	180, 697
BssAI	RCCGGY	1 cut(s)	37
BssECI	CCNNGG	3 cut(s)	390, 426, 466
BssMI	GATC	1 cut(s)	689
BssNAI	GTATAC	1 cut(s)	72
BssNI	GRCGYC	1 cut(s)	302
BssT1I	CCWWGG	1 cut(s)	390
Bst1107I	GTATAC	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	578
Bst4CI	ACNGT	4 cut(s)	76, 427, 467, 622
Bst6I	CTCTTC	1 cut(s)	191
BstACI	GRCGYC	1 cut(s)	302
BstAPI	GCANNNNNTGC	1 cut(s)	600
BstAUI	TGTACA	1 cut(s)	90
BstC8I	GCNNGC	1 cut(s)	583
BstDEI	CTNAG	1 cut(s)	544
BstDSI	CCRYGG	2 cut(s)	426, 466
BstEII	GGTNACC	1 cut(s)	55
BstF5I	GGATG	3 cut(s)	120, 539, 693
BstFNI	CGCG	1 cut(s)	266
BstH2I	RGCGCY	1 cut(s)	299
BstHHI	GCGC	2 cut(s)	298, 715
BstKTI	GATC	1 cut(s)	692
BstMAI	GTCTC	1 cut(s)	541
BstMBI	GATC	1 cut(s)	689
BstMWI	GCNNNNNNNGC	2 cut(s)	591, 600
BstNI	CCWGG	1 cut(s)	578
BstPI	GGTNACC	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	576
BstUI	CGCG	1 cut(s)	266
BstV1I	GCAGC	3 cut(s)	247, 332, 603
BstX2I	RGATCY	1 cut(s)	689
BstYI	RGATCY	1 cut(s)	689
BstZ17I	GTATAC	1 cut(s)	72
Bsu36I	CCTNAGG	1 cut(s)	544
BsuRI	GGCC	3 cut(s)	205, 249, 549
BtgI	CCRYGG	2 cut(s)	426, 466
BtsCI	GGATG	3 cut(s)	120, 539, 693
BtsIMutI	CAGTG	1 cut(s)	173
Cac8I	GCNNGC	1 cut(s)	583
CciI	TCATGA	1 cut(s)	13
CfoI	GCGC	2 cut(s)	298, 715
Cfr10I	RCCGGY	1 cut(s)	37
Cfr13I	GGNCC	3 cut(s)	423, 470, 489
CseI	GACGC	1 cut(s)	523
Csp6I	GTAC	1 cut(s)	91
CspCI	CAANNNNNGTGG	4 cut(s)	298, 333, 481, 516
CviAII	CATG	3 cut(s)	14, 685, 721
CviQI	GTAC	1 cut(s)	91
DdeI	CTNAG	1 cut(s)	544
DpnI	GATC	1 cut(s)	691
DpnII	GATC	1 cut(s)	689
Eam1104I	CTCTTC	1 cut(s)	191
EarI	CTCTTC	1 cut(s)	191
Eco130I	CCWWGG	1 cut(s)	390
Eco32I	GATATC	1 cut(s)	647
Eco47I	GGWCC	3 cut(s)	423, 470, 489
Eco47III	AGCGCT	1 cut(s)	297
Eco81I	CCTNAGG	1 cut(s)	544
Eco88I	CYCGRG	1 cut(s)	661
Eco91I	GGTNACC	1 cut(s)	55
EcoO65I	GGTNACC	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	576
EcoRV	GATATC	1 cut(s)	647
EcoT14I	CCWWGG	1 cut(s)	390
ErhI	CCWWGG	1 cut(s)	390
Esp3I	CGTCTC	1 cut(s)	541
FaeI	CATG	3 cut(s)	17, 688, 724
FalI	AAGNNNNNCTT	2 cut(s)	374, 406
FaqI	GGGAC	1 cut(s)	436
FatI	CATG	3 cut(s)	13, 684, 720
FblI	GTMKAC	1 cut(s)	71
Fnu4HI	GCNGC	6 cut(s)	159, 247, 261, 264, 321, 592
FokI	GGATG	3 cut(s)	127, 526, 680
Fsp4HI	GCNGC	6 cut(s)	159, 247, 261, 264, 321, 592
FspBI	CTAG	3 cut(s)	98, 293, 528
GlaI	GCGC	2 cut(s)	297, 714
GluI	GCNGC	6 cut(s)	159, 247, 261, 264, 321, 592
GsaI	CCCAGC	1 cut(s)	344
HaeII	RGCGCY	1 cut(s)	299
HaeIII	GGCC	3 cut(s)	205, 249, 549
HapII	CCGG	2 cut(s)	38, 402
HgaI	GACGC	1 cut(s)	523
HhaI	GCGC	2 cut(s)	298, 715
Hin1I	GRCGYC	1 cut(s)	302
Hin1II	CATG	3 cut(s)	17, 688, 724
Hin6I	GCGC	2 cut(s)	296, 713
HinP1I	GCGC	2 cut(s)	296, 713
HincII	GTYRAC	1 cut(s)	387
HindII	GTYRAC	1 cut(s)	387
HindIII	AAGCTT	1 cut(s)	234
HinfI	GANTC	3 cut(s)	10, 289, 736
HpaII	CCGG	2 cut(s)	38, 402
HphI	GGTGA	1 cut(s)	297
Hpy166II	GTNNAC	4 cut(s)	72, 387, 470, 492
Hpy188I	TCNGA	2 cut(s)	183, 608
Hpy188III	TCNNGA	1 cut(s)	14
Hpy8I	GTNNAC	4 cut(s)	72, 387, 470, 492
HpyAV	CCTTC	3 cut(s)	195, 361, 515
HpyCH4III	ACNGT	4 cut(s)	76, 427, 467, 622
HpyCH4IV	ACGT	1 cut(s)	302
HpyCH4V	TGCA	6 cut(s)	7, 104, 320, 681, 720, 751
HpyF10VI	GCNNNNNNNGC	2 cut(s)	591, 600
HpyF3I	CTNAG	1 cut(s)	544
HpySE526I	ACGT	1 cut(s)	302
Hsp92I	GRCGYC	1 cut(s)	302
Hsp92II	CATG	3 cut(s)	17, 688, 724
HspAI	GCGC	2 cut(s)	296, 713
Kzo9I	GATC	1 cut(s)	689
LmnI	GCTCC	1 cut(s)	443
Lsp1109I	GCAGC	3 cut(s)	247, 332, 603
LweI	GCATC	3 cut(s)	603, 690, 738
MaeI	CTAG	3 cut(s)	98, 293, 528
MaeII	ACGT	1 cut(s)	302
MaeIII	GTNAC	3 cut(s)	55, 106, 303
MalI	GATC	1 cut(s)	691
MboI	GATC	1 cut(s)	689
MboII	GAAGA	3 cut(s)	208, 643, 757
MflI	RGATCY	1 cut(s)	689
MhlI	GDGCHC	1 cut(s)	668
MluCI	AATT	3 cut(s)	28, 252, 414
MlyI	GAGTC	1 cut(s)	298
MnlI	CCTC	6 cut(s)	10, 34, 186, 347, 434, 553
MroXI	GAANNNNTTC	1 cut(s)	128
MspA1I	CMGCKG	1 cut(s)	158
MspI	CCGG	2 cut(s)	38, 402
MspR9I	CCNGG	1 cut(s)	578
MvaI	CCWGG	1 cut(s)	578
MvnI	CGCG	1 cut(s)	266
MwoI	GCNNNNNNNGC	2 cut(s)	591, 600
NdeII	GATC	1 cut(s)	689
NlaIII	CATG	3 cut(s)	17, 688, 724
NlaIV	GGNNCC	3 cut(s)	171, 424, 691
NmuCI	GTSAC	1 cut(s)	303
PaeR7I	CTCGAG	1 cut(s)	661
PagI	TCATGA	1 cut(s)	13
PdmI	GAANNNNTTC	1 cut(s)	128
PfeI	GAWTC	2 cut(s)	10, 736
PkrI	GCNGC	6 cut(s)	160, 248, 262, 265, 322, 593
PleI	GAGTC	1 cut(s)	297
PpsI	GAGTC	1 cut(s)	297
Psp6I	CCWGG	1 cut(s)	576
PspEI	GGTNACC	1 cut(s)	55
PspFI	CCCAGC	1 cut(s)	340
PspGI	CCWGG	1 cut(s)	576
PspN4I	GGNNCC	3 cut(s)	171, 424, 691
PspPI	GGNCC	3 cut(s)	423, 470, 489
PspXI	VCTCGAGB	1 cut(s)	661
PsrI	GAACNNNNNNTAC	2 cut(s)	74, 106
PsuI	RGATCY	1 cut(s)	689
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
SatI	GCNGC	6 cut(s)	159, 247, 261, 264, 321, 592
Sau3AI	GATC	1 cut(s)	689
Sau96I	GGNCC	3 cut(s)	423, 470, 489
SchI	GAGTC	1 cut(s)	298
ScrFI	CCNGG	1 cut(s)	578
SduI	GDGCHC	1 cut(s)	668
SetI	ASST	6 cut(s)	238, 305, 353, 392, 475, 507
SfaNI	GCATC	3 cut(s)	603, 690, 738
Sfr274I	CTCGAG	1 cut(s)	661
SinI	GGWCC	3 cut(s)	423, 470, 489
SlaI	CTCGAG	1 cut(s)	661
SmlI	CTYRAG	2 cut(s)	188, 661
SmoI	CTYRAG	2 cut(s)	188, 661
SpeI	ACTAGT	2 cut(s)	97, 527
Sse9I	AATT	3 cut(s)	28, 252, 414
SsiI	CCGC	3 cut(s)	158, 246, 264
SspMI	CTAG	3 cut(s)	98, 293, 528
StyD4I	CCNGG	1 cut(s)	576
StyI	CCWWGG	1 cut(s)	390
TaaI	ACNGT	4 cut(s)	76, 427, 467, 622
TaiI	ACGT	1 cut(s)	305
TaqI	TCGA	1 cut(s)	662
TasI	AATT	3 cut(s)	28, 252, 414
TatI	WGTACW	1 cut(s)	90
TauI	GCSGC	3 cut(s)	161, 249, 266
TfiI	GAWTC	2 cut(s)	10, 736
TscAI	CASTG	1 cut(s)	180
TseFI	GTSAC	1 cut(s)	303
TseI	GCWGC	3 cut(s)	260, 320, 591
Tsp45I	GTSAC	1 cut(s)	303
TspDTI	ATGAA	2 cut(s)	95, 131
TspGWI	ACGGA	1 cut(s)	691
TspRI	CASTG	1 cut(s)	180
VpaK11BI	GGWCC	3 cut(s)	423, 470, 489
XcmI	CCANNNNNNNNNTGG	2 cut(s)	213, 352
XhoI	CTCGAG	1 cut(s)	661
XmiI	GTMKAC	1 cut(s)	71
XmnI	GAANNNNTTC	1 cut(s)	128
XspI	CTAG	3 cut(s)	98, 293, 528
ZraI	GACGTC	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.