Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002045.1

Orthogroup ID

OG0001133

Physical Location & Seq

Genomic Coordinates Reverse (-)

103973 .. 107046

Gene Structure 3074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002045.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

atgatggcctctgagaaagtagatttggccttcctcccgttctattttgcaagctgcaatcatggattcgtcaaggtctttgacgaccaggctctttctctccctctccaagaagaggaacagaagctccaacgaaggaggagaagaagagaagagaggagaagagaagcacgtactggaagagaagagaagcggctgctgcagatagtttggatacgacgtatccagaccgtatctaaatcaggatccgcgtatccccgcgtatccgatcgtattgtacccgtatcccggatcgatacgggaaacattggtttctcagtgattacatgcattttgttgggttttgcaggaaacattggttcctcagtgattacatgctcttccaacggaagggggcatgatttagtgaagaacgaagtgaagagtgtggaacagtttgctcaagagaaaaggcgagctgacctgtctgcttggactacctcagaagagttaactgtgaataaatctggtcagtggaagagatgggttttgcagcagaatctcagccaaaacagggaatgccctgaggaatgtaaggaagctattgcaccactgatgcttgctgcagctagattttcaggtttaccaaagtacattctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010291 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0016491 GO:0031967 GO:0031975 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0055114 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

213

Amino Acids

24.36

Weight (kDa)

9.67

Isoelectric Point (pI)

81.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24275 AT5G24275 AT5G24275 AT5G24275 AT5G24280 AT5G24280 AT5G24280
fragaria_vesca	FvH4_7g31550 FvH4_7g31550 FvH4_7g32260
malus_domestica	MD07G1288100.v1.1
prunus_persica	Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1
pyrus_communis	pycom07g26090
rosa_chinensis	RchiOBHm_Chr1g0380531 RchiOBHm_Chr1g0381531
rosa_laevigata	RLG00000026287
rosa_multiflora	Rmu_co8450373.1_g000001 Rmu_sc0000701.1_g000020 Rmu_sc0002045.1_g000020 Rmu_sc0010633.1_g000011 Rmu_ssc0000015.1_g000008
rosa_roxburghii	Rroxscaffold_4G00279220
rosa_rugosa	Rorug01G0422200 Rorug01G0422300 Rorug06G0084200
rosa_samantha	Rh1AG446800 Rh1BG402100 Rh1CG416300 Rh1CG424300 Rh1DG432300 Rh2DG318300 Rh3BG122000 Rh5AG085500 Rh5AG170300 Rh5BG265400 Rh6AG200100 Rh6AG200300 Rh6AG200400 Rh6BG025800 Rh6BG203500 Rh6BG203600 Rh6BG203800 Rh6CG203700 Rh6CG203800 Rh6CG204000 Rh6DG195200
rosa_wichuraiana	Rw1G038870 Rw1G039500 Rw6G017380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	251, 261
AciI	CCGC	3 cut(s)	193, 249, 259
AclWI	GGATC	3 cut(s)	240, 253, 299
AfaI	GTAC	3 cut(s)	175, 279, 632
AfiI	CCNNNNNNNGG	4 cut(s)	115, 288, 390, 553
AjnI	CCWGG	1 cut(s)	87
AjuI	GAANNNNNNNTTGG	2 cut(s)	8, 40
AloI	GAACNNNNNNTCC	2 cut(s)	111, 143
AluBI	AGCT	5 cut(s)	54, 127, 458, 581, 608
AluI	AGCT	5 cut(s)	54, 127, 458, 581, 608
AlwI	GGATC	3 cut(s)	240, 253, 299
AoxI	GGCC	2 cut(s)	6, 27
ApeKI	GCWGC	6 cut(s)	54, 196, 199, 532, 602, 605
AsuC2I	CCSGG	1 cut(s)	289
AxyI	CCTNAGG	1 cut(s)	564
BamHI	GGATCC	1 cut(s)	245
BbvI	GCAGC	6 cut(s)	41, 183, 186, 544, 589, 617
BccI	CCATC	1 cut(s)	516
BciT130I	CCWGG	1 cut(s)	89
BciVI	GTATCC	5 cut(s)	207, 233, 264, 274, 295
BcnI	CCSGG	1 cut(s)	289
BfaI	CTAG	1 cut(s)	609
BfmI	CTRYAG	2 cut(s)	200, 603
BfuI	GTATCC	5 cut(s)	207, 233, 264, 274, 295
BisI	GCNGC	7 cut(s)	55, 194, 197, 200, 533, 603, 606
BlsI	GCNGC	7 cut(s)	56, 195, 198, 201, 534, 604, 607
Bme1390I	CCNGG	2 cut(s)	89, 289
BmiI	GGNNCC	2 cut(s)	247, 361
BmrFI	CCNGG	2 cut(s)	89, 289
BmsI	GCATC	1 cut(s)	585
BpuEI	CTTGAG	1 cut(s)	426
BpuMI	CCSGG	1 cut(s)	289
Bsa29I	ATCGAT	1 cut(s)	294
BsaAI	YACGTR	1 cut(s)	173
BsaXI	ACNNNNNCTCC	2 cut(s)	111, 141
Bsc4I	CCNNNNNNNGG	4 cut(s)	115, 288, 390, 553
Bse1I	ACTGG	1 cut(s)	181
Bse21I	CCTNAGG	1 cut(s)	564
BseBI	CCWGG	1 cut(s)	89
BseCI	ATCGAT	1 cut(s)	294
BseLI	CCNNNNNNNGG	4 cut(s)	115, 288, 390, 553
BseMII	CTCAG	5 cut(s)	330, 378, 495, 555, 556
BseNI	ACTGG	1 cut(s)	181
BseRI	GAGGAG	2 cut(s)	154, 172
BseXI	GCAGC	6 cut(s)	41, 183, 186, 544, 589, 617
Bsh1236I	CGCG	2 cut(s)	251, 261
Bsh1285I	CGRYCG	1 cut(s)	271
BshFI	GGCC	2 cut(s)	8, 29
BshVI	ATCGAT	1 cut(s)	294
BsiEI	CGRYCG	1 cut(s)	271
BsiSI	CCGG	1 cut(s)	289
BslI	CCNNNNNNNGG	4 cut(s)	115, 288, 390, 553
BsmI	GAATGC	1 cut(s)	563
BsnI	GGCC	2 cut(s)	8, 29
Bsp143I	GATC	3 cut(s)	245, 268, 291
BspACI	CCGC	3 cut(s)	193, 249, 259
BspANI	GGCC	2 cut(s)	8, 29
BspCNI	CTCAG	6 cut(s)	4, 329, 377, 494, 555, 556
BspDI	ATCGAT	1 cut(s)	294
BspFNI	CGCG	2 cut(s)	251, 261
BspLI	GGNNCC	2 cut(s)	247, 361
BspMAI	CTGCAG	2 cut(s)	204, 607
BspPI	GGATC	3 cut(s)	240, 253, 299
BspQI	GCTCTTC	1 cut(s)	385
BsrI	ACTGG	1 cut(s)	181
BssMI	GATC	3 cut(s)	245, 268, 291
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	3 cut(s)	232, 435, 496
BstBAI	YACGTR	1 cut(s)	173
BstC8I	GCNNGC	3 cut(s)	52, 456, 600
BstDEI	CTNAG	6 cut(s)	12, 316, 364, 481, 542, 564
BstFNI	CGCG	2 cut(s)	251, 261
BstKTI	GATC	3 cut(s)	248, 271, 294
BstMBI	GATC	3 cut(s)	245, 268, 291
BstMCI	CGRYCG	1 cut(s)	271
BstMWI	GCNNNNNNNGC	1 cut(s)	199
BstNI	CCWGG	1 cut(s)	89
BstNSI	RCATGY	2 cut(s)	330, 378
BstSCI	CCNGG	2 cut(s)	87, 287
BstSFI	CTRYAG	2 cut(s)	200, 603
BstUI	CGCG	2 cut(s)	251, 261
BstV1I	GCAGC	6 cut(s)	41, 183, 186, 544, 589, 617
BstX2I	RGATCY	1 cut(s)	245
BstYI	RGATCY	1 cut(s)	245
Bsu15I	ATCGAT	1 cut(s)	294
Bsu36I	CCTNAGG	1 cut(s)	564
BsuI	GTATCC	5 cut(s)	207, 233, 264, 274, 295
BsuRI	GGCC	2 cut(s)	8, 29
BsuTUI	ATCGAT	1 cut(s)	294
BtsIMutI	CAGTG	4 cut(s)	324, 372, 518, 590
Cac8I	GCNNGC	3 cut(s)	52, 456, 600
ClaI	ATCGAT	1 cut(s)	294
Csp6I	GTAC	3 cut(s)	174, 278, 631
CviAII	CATG	4 cut(s)	62, 327, 375, 398
CviQI	GTAC	3 cut(s)	174, 278, 631
DdeI	CTNAG	6 cut(s)	12, 316, 364, 481, 542, 564
DpnI	GATC	3 cut(s)	247, 270, 293
DpnII	GATC	3 cut(s)	245, 268, 291
Eco81I	CCTNAGG	1 cut(s)	564
EcoRII	CCWGG	1 cut(s)	87
EcoT22I	ATGCAT	1 cut(s)	332
FaeI	CATG	4 cut(s)	65, 330, 378, 401
FaiI	YATR	4 cut(s)	63, 328, 376, 399
FatI	CATG	4 cut(s)	61, 326, 374, 397
FauI	CCCGC	1 cut(s)	266
Fnu4HI	GCNGC	7 cut(s)	55, 194, 197, 200, 533, 603, 606
Fsp4HI	GCNGC	7 cut(s)	55, 194, 197, 200, 533, 603, 606
FspBI	CTAG	1 cut(s)	609
GluI	GCNGC	7 cut(s)	55, 194, 197, 200, 533, 603, 606
HaeIII	GGCC	2 cut(s)	8, 29
HapII	CCGG	1 cut(s)	289
Hin1II	CATG	4 cut(s)	65, 330, 378, 401
HincII	GTYRAC	1 cut(s)	492
HindII	GTYRAC	1 cut(s)	492
HinfI	GANTC	2 cut(s)	66, 538
HpaI	GTTAAC	1 cut(s)	492
HpaII	CCGG	1 cut(s)	289
Hpy166II	GTNNAC	2 cut(s)	492, 623
Hpy188I	TCNGA	4 cut(s)	13, 268, 484, 641
Hpy188III	TCNNGA	3 cut(s)	226, 243, 443
Hpy8I	GTNNAC	2 cut(s)	492, 623
Hpy99I	CGWCG	1 cut(s)	222
HpyAV	CCTTC	3 cut(s)	40, 129, 384
HpyCH4III	ACNGT	3 cut(s)	232, 435, 496
HpyCH4IV	ACGT	2 cut(s)	172, 220
HpyCH4V	TGCA	8 cut(s)	50, 57, 202, 330, 347, 532, 587, 605
HpyF10VI	GCNNNNNNNGC	1 cut(s)	199
HpyF3I	CTNAG	6 cut(s)	12, 316, 364, 481, 542, 564
HpySE526I	ACGT	2 cut(s)	172, 220
Hsp92II	CATG	4 cut(s)	65, 330, 378, 401
KspAI	GTTAAC	1 cut(s)	492
Kzo9I	GATC	3 cut(s)	245, 268, 291
LguI	GCTCTTC	1 cut(s)	385
LmnI	GCTCC	1 cut(s)	132
Lsp1109I	GCAGC	6 cut(s)	41, 183, 186, 544, 589, 617
LweI	GCATC	1 cut(s)	585
MaeI	CTAG	1 cut(s)	609
MaeII	ACGT	2 cut(s)	172, 220
MalI	GATC	3 cut(s)	247, 270, 293
MboI	GATC	3 cut(s)	245, 268, 291
MflI	RGATCY	1 cut(s)	245
MmeI	TCCRAC	2 cut(s)	154, 408
MnlI	CCTC	9 cut(s)	19, 44, 109, 114, 132, 150, 373, 490, 559
Mph1103I	ATGCAT	1 cut(s)	332
MseI	TTAA	1 cut(s)	491
MspI	CCGG	1 cut(s)	289
MspR9I	CCNGG	2 cut(s)	89, 289
Mva1269I	GAATGC	1 cut(s)	563
MvaI	CCWGG	1 cut(s)	89
MvnI	CGCG	2 cut(s)	251, 261
MwoI	GCNNNNNNNGC	1 cut(s)	199
NciI	CCSGG	1 cut(s)	289
NdeII	GATC	3 cut(s)	245, 268, 291
NlaIII	CATG	4 cut(s)	65, 330, 378, 401
NlaIV	GGNNCC	2 cut(s)	247, 361
NsiI	ATGCAT	1 cut(s)	332
NspI	RCATGY	2 cut(s)	330, 378
PciSI	GCTCTTC	1 cut(s)	385
PctI	GAATGC	1 cut(s)	563
PfeI	GAWTC	2 cut(s)	66, 538
PfoI	TCCNGGA	1 cut(s)	287
PkrI	GCNGC	7 cut(s)	56, 195, 198, 201, 534, 604, 607
Ple19I	CGATCG	1 cut(s)	271
Ppu21I	YACGTR	1 cut(s)	173
Psp6I	CCWGG	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	87
PspN4I	GGNNCC	2 cut(s)	247, 361
PstI	CTGCAG	2 cut(s)	204, 607
PsuI	RGATCY	1 cut(s)	245
PvuI	CGATCG	1 cut(s)	271
RsaI	GTAC	3 cut(s)	175, 279, 632
RsaNI	GTAC	3 cut(s)	174, 278, 631
SapI	GCTCTTC	1 cut(s)	385
SaqAI	TTAA	1 cut(s)	491
SatI	GCNGC	7 cut(s)	55, 194, 197, 200, 533, 603, 606
Sau3AI	GATC	3 cut(s)	245, 268, 291
ScrFI	CCNGG	2 cut(s)	89, 289
SfaNI	GCATC	1 cut(s)	585
SfcI	CTRYAG	2 cut(s)	200, 603
SmlI	CTYRAG	1 cut(s)	441
SmoI	CTYRAG	1 cut(s)	441
SsiI	CCGC	3 cut(s)	193, 249, 259
SspMI	CTAG	1 cut(s)	609
StyD4I	CCNGG	2 cut(s)	87, 287
TaaI	ACNGT	3 cut(s)	232, 435, 496
TaiI	ACGT	2 cut(s)	175, 223
TaqI	TCGA	1 cut(s)	294
TatI	WGTACW	1 cut(s)	630
TauI	GCSGC	1 cut(s)	196
TfiI	GAWTC	2 cut(s)	66, 538
Tru1I	TTAA	1 cut(s)	491
Tru9I	TTAA	1 cut(s)	491
TscAI	CASTG	4 cut(s)	324, 372, 518, 597
TseI	GCWGC	6 cut(s)	54, 196, 199, 532, 602, 605
TspGWI	ACGGA	1 cut(s)	402
TspRI	CASTG	4 cut(s)	324, 372, 518, 597
XceI	RCATGY	2 cut(s)	330, 378
XspI	CTAG	1 cut(s)	609
Zsp2I	ATGCAT	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.