Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8450373.1

Orthogroup ID

OG0001133

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 944

Gene Structure 944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8450373.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 248 bp

tatcaatttatgtctactccaacaatgatgttttactgaatcttcagtctcaaactgagaaaagggtgttgatgatttcatcaaaggtgcctgacgtttgcgtggctggtactcaaatggaaaatatggtttttgaaattgtcagccttgatgttgttgatgatactattcagcatgttgataaaagtggccaattacatatagctacaataatgggcggttcatcatccatggaggaatccctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c_3

Protein Analysis

81

Amino Acids

8.89

Weight (kDa)

4.33

Isoelectric Point (pI)

39.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24275 AT5G24275 AT5G24275 AT5G24275 AT5G24280 AT5G24280 AT5G24280
fragaria_vesca	FvH4_7g31550 FvH4_7g31550 FvH4_7g32260
malus_domestica	MD07G1288100.v1.1
prunus_persica	Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1
pyrus_communis	pycom07g26090
rosa_chinensis	RchiOBHm_Chr1g0380531 RchiOBHm_Chr1g0381531
rosa_laevigata	RLG00000026287
rosa_multiflora	Rmu_co8450373.1_g000001 Rmu_sc0000701.1_g000020 Rmu_sc0002045.1_g000020 Rmu_sc0010633.1_g000011 Rmu_ssc0000015.1_g000008
rosa_roxburghii	Rroxscaffold_4G00279220
rosa_rugosa	Rorug01G0422200 Rorug01G0422300 Rorug06G0084200
rosa_samantha	Rh1AG446800 Rh1BG402100 Rh1CG416300 Rh1CG424300 Rh1DG432300 Rh2DG318300 Rh3BG122000 Rh5AG085500 Rh5AG170300 Rh5BG265400 Rh6AG200100 Rh6AG200300 Rh6AG200400 Rh6BG025800 Rh6BG203500 Rh6BG203600 Rh6BG203800 Rh6CG203700 Rh6CG203800 Rh6CG204000 Rh6DG195200
rosa_wichuraiana	Rw1G038870 Rw1G039500 Rw6G017380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	87
AccI	GTMKAC	1 cut(s)	14
AciI	CCGC	1 cut(s)	218
AcoI	YGGCCR	1 cut(s)	189
AcuI	CTGAAG	1 cut(s)	28
AfaI	GTAC	1 cut(s)	111
AgsI	TTSAA	1 cut(s)	136
AluBI	AGCT	1 cut(s)	205
AluI	AGCT	1 cut(s)	205
Alw26I	GTCTC	1 cut(s)	53
AoxI	GGCC	1 cut(s)	189
BalI	TGGCCA	1 cut(s)	191
BanI	GGYRCC	1 cut(s)	87
BcoDI	GTCTC	1 cut(s)	53
BmiI	GGNNCC	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	230
BseDI	CCNNGG	1 cut(s)	230
BseGI	GGATG	1 cut(s)	226
BseMII	CTCAG	1 cut(s)	47
BshFI	GGCC	1 cut(s)	191
BshNI	GGYRCC	1 cut(s)	87
BsmAI	GTCTC	1 cut(s)	53
BsnI	GGCC	1 cut(s)	191
Bsp19I	CCATGG	1 cut(s)	230
BspACI	CCGC	1 cut(s)	218
BspANI	GGCC	1 cut(s)	191
BspCNI	CTCAG	1 cut(s)	48
BspLI	GGNNCC	1 cut(s)	89
BspT107I	GGYRCC	1 cut(s)	87
BssECI	CCNNGG	1 cut(s)	230
BssT1I	CCWWGG	1 cut(s)	230
BstDEI	CTNAG	1 cut(s)	56
BstDSI	CCRYGG	1 cut(s)	230
BstF5I	GGATG	1 cut(s)	226
BstMAI	GTCTC	1 cut(s)	53
BstNSI	RCATGY	1 cut(s)	178
BsuRI	GGCC	1 cut(s)	191
BtgI	CCRYGG	1 cut(s)	230
BtsCI	GGATG	1 cut(s)	226
Csp6I	GTAC	1 cut(s)	110
CviAII	CATG	2 cut(s)	175, 231
CviJI	RGCY	4 cut(s)	106, 146, 191, 205
CviKI_1	RGCY	4 cut(s)	106, 146, 191, 205
CviQI	GTAC	1 cut(s)	110
DdeI	CTNAG	1 cut(s)	56
EaeI	YGGCCR	1 cut(s)	189
Eco130I	CCWWGG	1 cut(s)	230
Eco57I	CTGAAG	1 cut(s)	28
EcoT14I	CCWWGG	1 cut(s)	230
ErhI	CCWWGG	1 cut(s)	230
FaeI	CATG	2 cut(s)	178, 234
FaiI	YATR	6 cut(s)	11, 127, 176, 200, 202, 232
FatI	CATG	2 cut(s)	174, 230
FblI	GTMKAC	1 cut(s)	14
FokI	GGATG	1 cut(s)	213
HaeIII	GGCC	1 cut(s)	191
Hin1II	CATG	2 cut(s)	178, 234
HinfI	GANTC	2 cut(s)	39, 238
Hpy166II	GTNNAC	1 cut(s)	15
Hpy8I	GTNNAC	1 cut(s)	15
HpyCH4IV	ACGT	1 cut(s)	95
HpyF3I	CTNAG	1 cut(s)	56
HpySE526I	ACGT	1 cut(s)	95
Hsp92II	CATG	2 cut(s)	178, 234
LpnPI	CCDG	2 cut(s)	92, 104
MaeII	ACGT	1 cut(s)	95
MboII	GAAGA	1 cut(s)	34
MlsI	TGGCCA	1 cut(s)	191
MluCI	AATT	3 cut(s)	5, 137, 193
MluNI	TGGCCA	1 cut(s)	191
MmeI	TCCRAC	1 cut(s)	44
MnlI	CCTC	1 cut(s)	228
Mox20I	TGGCCA	1 cut(s)	191
MscI	TGGCCA	1 cut(s)	191
Msp20I	TGGCCA	1 cut(s)	191
NcoI	CCATGG	1 cut(s)	230
NlaIII	CATG	2 cut(s)	178, 234
NlaIV	GGNNCC	1 cut(s)	89
NspI	RCATGY	1 cut(s)	178
PfeI	GAWTC	2 cut(s)	39, 238
PspN4I	GGNNCC	1 cut(s)	89
RsaI	GTAC	1 cut(s)	111
RsaNI	GTAC	1 cut(s)	110
SetI	ASST	3 cut(s)	89, 98, 207
SgeI	CNNG	6 cut(s)	103, 114, 119, 160, 187, 243
Sse9I	AATT	3 cut(s)	5, 137, 193
SsiI	CCGC	1 cut(s)	218
StyI	CCWWGG	1 cut(s)	230
TaiI	ACGT	1 cut(s)	98
TasI	AATT	3 cut(s)	5, 137, 193
TfiI	GAWTC	2 cut(s)	39, 238
TspDTI	ATGAA	2 cut(s)	68, 212
XceI	RCATGY	1 cut(s)	178
XmiI	GTMKAC	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.