Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001133

Physical Location & Seq

Genomic Coordinates Reverse (-)

38359868 .. 38365858

Gene Structure 5991 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG203600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGAAAGTGTTCCTACCGCTCTTTGTTTTGACACCATGCATTGCCATAGCTGCTTGTGTGGGTAGATTTTTAATGGAGGCAGGAATTCCAAATGTTATGGTACATGATGATCCTTCAAATGCGCCAGTGGATGGTCCAACCCAATGGCCGTTGTGCCATTTGGAGGAACTACTGGTAGAGCTTATTGCAATTGCTACCAATGACGGACAAAAGTTTTTGAAACCACATTTGGAGCCAGATCATATTTCAGTTTGGGTGAAGGAATACAAGGATGGGAAAGTATCACCATACAAGAAGTCTGAACCCATCCCTGAGAAGAACGATGACCCTGTTAAAGTTGTAGTCGTTGAGAGCCTCCAGGACATTGTTTTCAAGTCTGGGAAAAATGTGCTGCTCGAGTTTTATGCTCCATGGTGTGGACACTGCAAGAAGGGTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000322 GO:0000323 GO:0000325 GO:0000326 GO:0000327 GO:0003006 GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0005794 GO:0005886 GO:0006457 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009505 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009960 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010109 GO:0010154 GO:0010205 GO:0010941 GO:0012505 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0019222 GO:0022414 GO:0030312 GO:0031090 GO:0031323 GO:0031324 GO:0031974 GO:0032501 GO:0032502 GO:0033554 GO:0034975 GO:0034976 GO:0042221 GO:0042548 GO:0043067 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043467 GO:0044422 GO:0044424 GO:0044432 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048316 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0070013 GO:0071944 GO:0098588 GO:0098805 GO:0140096 GO:1905156

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Thioredoxin Thioredoxin_6

Protein Analysis

146

Amino Acids

16.25

Weight (kDa)

5.69

Isoelectric Point (pI)

32.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	111 - 144	5.6e-08	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24275 AT5G24275 AT5G24275 AT5G24275 AT5G24280 AT5G24280 AT5G24280
fragaria_vesca	FvH4_7g31550 FvH4_7g31550 FvH4_7g32260
malus_domestica	MD07G1288100.v1.1
prunus_persica	Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1
pyrus_communis	pycom07g26090
rosa_chinensis	RchiOBHm_Chr1g0380531 RchiOBHm_Chr1g0381531
rosa_laevigata	RLG00000026287
rosa_multiflora	Rmu_co8450373.1_g000001 Rmu_sc0000701.1_g000020 Rmu_sc0002045.1_g000020 Rmu_sc0010633.1_g000011 Rmu_ssc0000015.1_g000008
rosa_roxburghii	Rroxscaffold_4G00279220
rosa_rugosa	Rorug01G0422200 Rorug01G0422300 Rorug06G0084200
rosa_samantha	Rh1AG446800 Rh1BG402100 Rh1CG416300 Rh1CG424300 Rh1DG432300 Rh2DG318300 Rh3BG122000 Rh5AG085500 Rh5AG170300 Rh5BG265400 Rh6AG200100 Rh6AG200300 Rh6AG200400 Rh6BG025800 Rh6BG203500 Rh6BG203600 Rh6BG203800 Rh6CG203700 Rh6CG203800 Rh6CG204000 Rh6DG195200
rosa_wichuraiana	Rw1G038870 Rw1G039500 Rw6G017380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	131, 416
AccBSI	CCGCTC	1 cut(s)	19
AciI	CCGC	1 cut(s)	17
AclWI	GGATC	1 cut(s)	104
AcoI	YGGCCR	1 cut(s)	146
AcsI	RAATTY	1 cut(s)	84
AfaI	GTAC	1 cut(s)	102
AfiI	CCNNNNNNNGG	3 cut(s)	131, 163, 416
AgsI	TTSAA	3 cut(s)	117, 220, 373
AjnI	CCWGG	1 cut(s)	357
AjuI	GAANNNNNNNTTGG	2 cut(s)	212, 244
AluBI	AGCT	2 cut(s)	50, 181
AluI	AGCT	2 cut(s)	50, 181
AlwI	GGATC	1 cut(s)	104
Ama87I	CYCGRG	1 cut(s)	395
AoxI	GGCC	1 cut(s)	146
ApeKI	GCWGC	2 cut(s)	50, 391
ApoI	RAATTY	1 cut(s)	84
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	124
AspS9I	GGNCC	1 cut(s)	134
AsuHPI	GGTGA	2 cut(s)	268, 276
AvaI	CYCGRG	1 cut(s)	395
AvaII	GGWCC	1 cut(s)	134
BbvI	GCAGC	2 cut(s)	37, 378
BccI	CCATC	3 cut(s)	125, 266, 314
BceAI	ACGGC	1 cut(s)	133
BcgI	CGANNNNNNTGC	2 cut(s)	386, 420
BciT130I	CCWGG	1 cut(s)	359
BisI	GCNGC	2 cut(s)	51, 392
BlsI	GCNGC	2 cut(s)	52, 393
Bme1390I	CCNGG	1 cut(s)	359
Bme18I	GGWCC	1 cut(s)	134
BmeT110I	CYCGRG	1 cut(s)	395
BmgT120I	GGNCC	1 cut(s)	134
BmiI	GGNNCC	2 cut(s)	234, 436
BmrFI	CCNGG	1 cut(s)	359
BpmI	CTGGAG	1 cut(s)	341
BsaJI	CCNNGG	1 cut(s)	410
Bsc4I	CCNNNNNNNGG	3 cut(s)	131, 163, 416
Bse1I	ACTGG	2 cut(s)	125, 177
Bse3DI	GCAATG	1 cut(s)	39
BseBI	CCWGG	1 cut(s)	359
BseDI	CCNNGG	1 cut(s)	410
BseGI	GGATG	3 cut(s)	136, 277, 306
BseLI	CCNNNNNNNGG	3 cut(s)	131, 163, 416
BseMI	GCAATG	1 cut(s)	39
BseMII	CTCAG	1 cut(s)	303
BseNI	ACTGG	2 cut(s)	125, 177
BseXI	GCAGC	2 cut(s)	37, 378
BshFI	GGCC	1 cut(s)	148
BsiHKCI	CYCGRG	1 cut(s)	395
BslI	CCNNNNNNNGG	3 cut(s)	131, 163, 416
BsnI	GGCC	1 cut(s)	148
BsoBI	CYCGRG	1 cut(s)	395
Bsp143I	GATC	2 cut(s)	109, 238
Bsp19I	CCATGG	1 cut(s)	410
BspACI	CCGC	1 cut(s)	17
BspANI	GGCC	1 cut(s)	148
BspCNI	CTCAG	1 cut(s)	304
BspLI	GGNNCC	2 cut(s)	234, 436
BspPI	GGATC	1 cut(s)	104
BsrBI	CCGCTC	1 cut(s)	19
BsrDI	GCAATG	1 cut(s)	39
BsrI	ACTGG	2 cut(s)	125, 177
BssECI	CCNNGG	1 cut(s)	410
BssMI	GATC	2 cut(s)	109, 238
BssT1I	CCWWGG	1 cut(s)	410
Bst2UI	CCWGG	1 cut(s)	359
BstDEI	CTNAG	1 cut(s)	312
BstDSI	CCRYGG	1 cut(s)	410
BstF5I	GGATG	3 cut(s)	136, 277, 306
BstHHI	GCGC	1 cut(s)	124
BstKTI	GATC	2 cut(s)	112, 241
BstMBI	GATC	2 cut(s)	109, 238
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstNI	CCWGG	1 cut(s)	359
BstSCI	CCNGG	1 cut(s)	357
BstV1I	GCAGC	2 cut(s)	37, 378
BstXI	CCANNNNNNTGG	1 cut(s)	144
BsuRI	GGCC	1 cut(s)	148
BtgI	CCRYGG	1 cut(s)	410
BtsCI	GGATG	3 cut(s)	136, 277, 306
BtsI	GCAGTG	1 cut(s)	421
BtsIMutI	CAGTG	2 cut(s)	132, 421
CfoI	GCGC	1 cut(s)	124
Cfr13I	GGNCC	1 cut(s)	134
Csp6I	GTAC	1 cut(s)	101
CviAII	CATG	3 cut(s)	36, 104, 411
CviJI	RGCY	5 cut(s)	50, 148, 181, 235, 354
CviKI_1	RGCY	5 cut(s)	50, 148, 181, 235, 354
CviQI	GTAC	1 cut(s)	101
DdeI	CTNAG	1 cut(s)	312
DpnI	GATC	2 cut(s)	111, 240
DpnII	GATC	2 cut(s)	109, 238
EaeI	YGGCCR	1 cut(s)	146
Eco130I	CCWWGG	1 cut(s)	410
Eco47I	GGWCC	1 cut(s)	134
Eco88I	CYCGRG	1 cut(s)	395
EcoRI	GAATTC	1 cut(s)	84
EcoRII	CCWGG	1 cut(s)	357
EcoT14I	CCWWGG	1 cut(s)	410
EcoT22I	ATGCAT	1 cut(s)	41
ErhI	CCWWGG	1 cut(s)	410
FaeI	CATG	3 cut(s)	39, 107, 414
FaiI	YATR	8 cut(s)	37, 47, 98, 105, 243, 289, 405, 412
FatI	CATG	3 cut(s)	35, 103, 410
Fnu4HI	GCNGC	2 cut(s)	51, 392
FokI	GGATG	3 cut(s)	143, 284, 293
Fsp4HI	GCNGC	2 cut(s)	51, 392
GlaI	GCGC	1 cut(s)	123
GluI	GCNGC	2 cut(s)	51, 392
GsuI	CTGGAG	1 cut(s)	341
HaeIII	GGCC	1 cut(s)	148
HhaI	GCGC	1 cut(s)	124
Hin1II	CATG	3 cut(s)	39, 107, 414
Hin6I	GCGC	1 cut(s)	122
HinP1I	GCGC	1 cut(s)	122
HphI	GGTGA	2 cut(s)	268, 276
Hpy166II	GTNNAC	1 cut(s)	419
Hpy188I	TCNGA	1 cut(s)	301
Hpy8I	GTNNAC	1 cut(s)	419
HpyAV	CCTTC	3 cut(s)	123, 253, 424
HpyCH4V	TGCA	3 cut(s)	39, 188, 426
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpyF3I	CTNAG	1 cut(s)	312
Hsp92II	CATG	3 cut(s)	39, 107, 414
HspAI	GCGC	1 cut(s)	122
Kzo9I	GATC	2 cut(s)	109, 238
LmnI	GCTCC	2 cut(s)	232, 412
LpnPI	CCDG	9 cut(s)	66, 138, 158, 249, 324, 342, 344, 363, 371
Lsp1109I	GCAGC	2 cut(s)	37, 378
MalI	GATC	2 cut(s)	111, 240
MbiI	CCGCTC	1 cut(s)	19
MboI	GATC	2 cut(s)	109, 238
MboII	GAAGA	1 cut(s)	328
MfeI	CAATTG	1 cut(s)	189
MluCI	AATT	2 cut(s)	84, 189
MmeI	TCCRAC	1 cut(s)	161
MnlI	CCTC	3 cut(s)	70, 157, 365
Mph1103I	ATGCAT	1 cut(s)	41
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	2 cut(s)	71, 333
MspR9I	CCNGG	1 cut(s)	359
MunI	CAATTG	1 cut(s)	189
MvaI	CCWGG	1 cut(s)	359
MwoI	GCNNNNNNNGC	1 cut(s)	50
NcoI	CCATGG	1 cut(s)	410
NdeII	GATC	2 cut(s)	109, 238
NlaIII	CATG	3 cut(s)	39, 107, 414
NlaIV	GGNNCC	2 cut(s)	234, 436
NsiI	ATGCAT	1 cut(s)	41
PaeR7I	CTCGAG	1 cut(s)	395
PdmI	GAANNNNTTC	1 cut(s)	8
PflMI	CCANNNNNTGG	2 cut(s)	131, 416
PfoI	TCCNGGA	1 cut(s)	357
PkrI	GCNGC	2 cut(s)	52, 393
Psp6I	CCWGG	1 cut(s)	357
PspGI	CCWGG	1 cut(s)	357
PspN4I	GGNNCC	2 cut(s)	234, 436
PspPI	GGNCC	1 cut(s)	134
PspXI	VCTCGAGB	1 cut(s)	395
RsaI	GTAC	1 cut(s)	102
RsaNI	GTAC	1 cut(s)	101
SaqAI	TTAA	2 cut(s)	71, 333
SatI	GCNGC	2 cut(s)	51, 392
Sau3AI	GATC	2 cut(s)	109, 238
Sau96I	GGNCC	1 cut(s)	134
ScrFI	CCNGG	1 cut(s)	359
SetI	ASST	2 cut(s)	52, 183
Sfr274I	CTCGAG	1 cut(s)	395
SinI	GGWCC	1 cut(s)	134
SlaI	CTCGAG	1 cut(s)	395
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
Sse9I	AATT	2 cut(s)	84, 189
SsiI	CCGC	1 cut(s)	17
StyD4I	CCNGG	1 cut(s)	357
StyI	CCWWGG	1 cut(s)	410
TaqI	TCGA	1 cut(s)	396
TasI	AATT	2 cut(s)	84, 189
Tru1I	TTAA	2 cut(s)	71, 333
Tru9I	TTAA	2 cut(s)	71, 333
TscAI	CASTG	2 cut(s)	132, 428
TseI	GCWGC	2 cut(s)	50, 391
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	219
TspRI	CASTG	2 cut(s)	132, 428
Van91I	CCANNNNNTGG	2 cut(s)	131, 416
VpaK11BI	GGWCC	1 cut(s)	134
XapI	RAATTY	1 cut(s)	84
XhoI	CTCGAG	1 cut(s)	395
XmnI	GAANNNNTTC	1 cut(s)	8
Zsp2I	ATGCAT	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.