Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001133

Physical Location & Seq

Genomic Coordinates Reverse (-)

34072178 .. 34079572

Gene Structure 7395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG203800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGCAAACATCTGGTGCTCTAATAATTTCTGATCTTCTTATATCTTACATTAGCCTAAGTGGTATGGTCAATCAGTTGTTTGTACATGATGATCCTTCAAATGCGCCAGTGGATGGTCCAACCCAATGGCCGTTGTGCCATTTGGAGGAACTACTGGTAGAGCTTATTGCAATTGCTGCTGATCATGGATGCATTGACCTTGGTGGCCTCTTCAAAGTGACTGCAGGTTATGAGAAACGTAGAAACATTGGTTTCTCAGTGATTACATGCTCTTCCAACGGAAGGGGGCCTGATTCAGTGAAGAACGAAGTGAAGAGTGTGGAACAGTTGGCTCAAGAGAAAAAGGCGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0005996 GO:0008150 GO:0008152 GO:0008676 GO:0009058 GO:0009059 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010306 GO:0010383 GO:0010393 GO:0010396 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016765 GO:0017144 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044283 GO:0044706 GO:0045229 GO:0045488 GO:0045489 GO:0046364 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052325 GO:0052546 GO:0060560 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

DAHP_synth_1

Protein Analysis

117

Amino Acids

12.57

Weight (kDa)

5.0

Isoelectric Point (pI)

27.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24275 AT5G24275 AT5G24275 AT5G24275 AT5G24280 AT5G24280 AT5G24280
fragaria_vesca	FvH4_7g31550 FvH4_7g31550 FvH4_7g32260
malus_domestica	MD07G1288100.v1.1
prunus_persica	Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1
pyrus_communis	pycom07g26090
rosa_chinensis	RchiOBHm_Chr1g0380531 RchiOBHm_Chr1g0381531
rosa_laevigata	RLG00000026287
rosa_multiflora	Rmu_co8450373.1_g000001 Rmu_sc0000701.1_g000020 Rmu_sc0002045.1_g000020 Rmu_sc0010633.1_g000011 Rmu_ssc0000015.1_g000008
rosa_roxburghii	Rroxscaffold_4G00279220
rosa_rugosa	Rorug01G0422200 Rorug01G0422300 Rorug06G0084200
rosa_samantha	Rh1AG446800 Rh1BG402100 Rh1CG416300 Rh1CG424300 Rh1DG432300 Rh2DG318300 Rh3BG122000 Rh5AG085500 Rh5AG170300 Rh5BG265400 Rh6AG200100 Rh6AG200300 Rh6AG200400 Rh6BG025800 Rh6BG203500 Rh6BG203600 Rh6BG203800 Rh6CG203700 Rh6CG203800 Rh6CG204000 Rh6DG195200
rosa_wichuraiana	Rw1G038870 Rw1G039500 Rw6G017380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	215
AccB7I	CCANNNNNTGG	1 cut(s)	113
AclWI	GGATC	1 cut(s)	86
AcoI	YGGCCR	1 cut(s)	128
AfaI	GTAC	1 cut(s)	84
AfiI	CCNNNNNNNGG	3 cut(s)	113, 145, 282
AgsI	TTSAA	2 cut(s)	99, 214
AluBI	AGCT	2 cut(s)	163, 351
AluI	AGCT	2 cut(s)	163, 351
Alw21I	GWGCWC	1 cut(s)	19
AlwI	GGATC	1 cut(s)	86
AoxI	GGCC	3 cut(s)	128, 205, 287
ApeKI	GCWGC	1 cut(s)	176
AspLEI	GCGC	1 cut(s)	106
AspS9I	GGNCC	2 cut(s)	116, 287
AvaII	GGWCC	1 cut(s)	116
Bbv12I	GWGCWC	1 cut(s)	19
BbvI	GCAGC	1 cut(s)	163
BccI	CCATC	1 cut(s)	107
BceAI	ACGGC	1 cut(s)	115
BclI	TGATCA	1 cut(s)	181
BfmI	CTRYAG	1 cut(s)	222
BfuAI	ACCTGC	1 cut(s)	215
BisI	GCNGC	1 cut(s)	177
BlsI	GCNGC	1 cut(s)	178
Bme18I	GGWCC	1 cut(s)	116
BmgT120I	GGNCC	2 cut(s)	116, 287
BmiI	GGNNCC	1 cut(s)	288
BmsI	GCATC	1 cut(s)	179
BpuEI	CTTGAG	1 cut(s)	318
BsaJI	CCNNGG	1 cut(s)	199
Bsc4I	CCNNNNNNNGG	3 cut(s)	113, 145, 282
Bse1I	ACTGG	2 cut(s)	107, 159
BseDI	CCNNGG	1 cut(s)	199
BseGI	GGATG	2 cut(s)	118, 194
BseLI	CCNNNNNNNGG	3 cut(s)	113, 145, 282
BseMII	CTCAG	1 cut(s)	270
BseNI	ACTGG	2 cut(s)	107, 159
BseXI	GCAGC	1 cut(s)	163
BshFI	GGCC	3 cut(s)	130, 207, 289
BsiHKAI	GWGCWC	1 cut(s)	19
BslI	CCNNNNNNNGG	3 cut(s)	113, 145, 282
BsnI	GGCC	3 cut(s)	130, 207, 289
Bsp1286I	GDGCHC	1 cut(s)	19
Bsp1407I	TGTACA	1 cut(s)	82
Bsp143I	GATC	3 cut(s)	31, 91, 181
BspANI	GGCC	3 cut(s)	130, 207, 289
BspCNI	CTCAG	1 cut(s)	269
BspLI	GGNNCC	1 cut(s)	288
BspMAI	CTGCAG	1 cut(s)	226
BspMI	ACCTGC	1 cut(s)	215
BspPI	GGATC	1 cut(s)	86
BspQI	GCTCTTC	1 cut(s)	277
BsrGI	TGTACA	1 cut(s)	82
BsrI	ACTGG	2 cut(s)	107, 159
BssECI	CCNNGG	1 cut(s)	199
BssMI	GATC	3 cut(s)	31, 91, 181
BssT1I	CCWWGG	1 cut(s)	199
Bst4CI	ACNGT	1 cut(s)	327
Bst6I	CTCTTC	3 cut(s)	215, 277, 308
BstAPI	GCANNNNNTGC	1 cut(s)	176
BstAUI	TGTACA	1 cut(s)	82
BstC8I	GCNNGC	1 cut(s)	349
BstDEI	CTNAG	2 cut(s)	56, 256
BstF5I	GGATG	2 cut(s)	118, 194
BstHHI	GCGC	1 cut(s)	106
BstKTI	GATC	3 cut(s)	34, 94, 184
BstMBI	GATC	3 cut(s)	31, 91, 181
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstNSI	RCATGY	1 cut(s)	270
BstSFI	CTRYAG	1 cut(s)	222
BstV1I	GCAGC	1 cut(s)	163
BstXI	CCANNNNNNTGG	1 cut(s)	126
BsuRI	GGCC	3 cut(s)	130, 207, 289
BtsCI	GGATG	2 cut(s)	118, 194
BtsIMutI	CAGTG	3 cut(s)	114, 264, 303
BveI	ACCTGC	1 cut(s)	215
Cac8I	GCNNGC	1 cut(s)	349
CfoI	GCGC	1 cut(s)	106
Cfr13I	GGNCC	2 cut(s)	116, 287
Csp6I	GTAC	1 cut(s)	83
CviAII	CATG	3 cut(s)	86, 185, 267
CviJI	RGCY	7 cut(s)	54, 130, 163, 207, 289, 332, 351
CviKI_1	RGCY	7 cut(s)	54, 130, 163, 207, 289, 332, 351
CviQI	GTAC	1 cut(s)	83
DdeI	CTNAG	2 cut(s)	56, 256
DpnI	GATC	3 cut(s)	33, 93, 183
DpnII	GATC	3 cut(s)	31, 91, 181
EaeI	YGGCCR	1 cut(s)	128
Eam1104I	CTCTTC	3 cut(s)	215, 277, 308
EarI	CTCTTC	3 cut(s)	215, 277, 308
Eco130I	CCWWGG	1 cut(s)	199
Eco47I	GGWCC	1 cut(s)	116
EcoO109I	RGGNCCY	1 cut(s)	287
EcoT14I	CCWWGG	1 cut(s)	199
EcoT22I	ATGCAT	1 cut(s)	194
ErhI	CCWWGG	1 cut(s)	199
FaeI	CATG	3 cut(s)	89, 188, 270
FaiI	YATR	6 cut(s)	41, 65, 87, 186, 231, 268
FatI	CATG	3 cut(s)	85, 184, 266
FbaI	TGATCA	1 cut(s)	181
Fnu4HI	GCNGC	1 cut(s)	177
FokI	GGATG	2 cut(s)	125, 201
Fsp4HI	GCNGC	1 cut(s)	177
GlaI	GCGC	1 cut(s)	105
GluI	GCNGC	1 cut(s)	177
HaeIII	GGCC	3 cut(s)	130, 207, 289
HhaI	GCGC	1 cut(s)	106
Hin1II	CATG	3 cut(s)	89, 188, 270
Hin6I	GCGC	1 cut(s)	104
HinP1I	GCGC	1 cut(s)	104
HinfI	GANTC	1 cut(s)	293
Hpy188I	TCNGA	1 cut(s)	31
Hpy188III	TCNNGA	1 cut(s)	335
HpyAV	CCTTC	2 cut(s)	105, 276
HpyCH4III	ACNGT	1 cut(s)	327
HpyCH4IV	ACGT	1 cut(s)	238
HpyCH4V	TGCA	4 cut(s)	4, 170, 192, 224
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
HpyF3I	CTNAG	2 cut(s)	56, 256
HpySE526I	ACGT	1 cut(s)	238
Hsp92II	CATG	3 cut(s)	89, 188, 270
HspAI	GCGC	1 cut(s)	104
Ksp22I	TGATCA	1 cut(s)	181
Kzo9I	GATC	3 cut(s)	31, 91, 181
LguI	GCTCTTC	1 cut(s)	277
LpnPI	CCDG	4 cut(s)	120, 140, 210, 303
Lsp1109I	GCAGC	1 cut(s)	163
LweI	GCATC	1 cut(s)	179
MaeII	ACGT	1 cut(s)	238
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	3 cut(s)	33, 93, 183
MboI	GATC	3 cut(s)	31, 91, 181
MboII	GAAGA	5 cut(s)	26, 202, 264, 313, 325
MfeI	CAATTG	1 cut(s)	171
MhlI	GDGCHC	1 cut(s)	19
MluCI	AATT	2 cut(s)	24, 171
MmeI	TCCRAC	2 cut(s)	143, 300
MnlI	CCTC	2 cut(s)	139, 218
Mph1103I	ATGCAT	1 cut(s)	194
MunI	CAATTG	1 cut(s)	171
MwoI	GCNNNNNNNGC	1 cut(s)	176
NdeII	GATC	3 cut(s)	31, 91, 181
NlaIII	CATG	3 cut(s)	89, 188, 270
NlaIV	GGNNCC	1 cut(s)	288
NmuCI	GTSAC	1 cut(s)	217
NsiI	ATGCAT	1 cut(s)	194
NspI	RCATGY	1 cut(s)	270
PciSI	GCTCTTC	1 cut(s)	277
PfeI	GAWTC	1 cut(s)	293
PflMI	CCANNNNNTGG	1 cut(s)	113
PkrI	GCNGC	1 cut(s)	178
PspN4I	GGNNCC	1 cut(s)	288
PspPI	GGNCC	2 cut(s)	116, 287
PstI	CTGCAG	1 cut(s)	226
RsaI	GTAC	1 cut(s)	84
RsaNI	GTAC	1 cut(s)	83
SapI	GCTCTTC	1 cut(s)	277
SatI	GCNGC	1 cut(s)	177
Sau3AI	GATC	3 cut(s)	31, 91, 181
Sau96I	GGNCC	2 cut(s)	116, 287
SduI	GDGCHC	1 cut(s)	19
SetI	ASST	5 cut(s)	165, 201, 229, 241, 353
SfaNI	GCATC	1 cut(s)	179
SfcI	CTRYAG	1 cut(s)	222
SinI	GGWCC	1 cut(s)	116
SmlI	CTYRAG	1 cut(s)	333
SmoI	CTYRAG	1 cut(s)	333
Sse9I	AATT	2 cut(s)	24, 171
StyI	CCWWGG	1 cut(s)	199
TaaI	ACNGT	1 cut(s)	327
TaiI	ACGT	1 cut(s)	241
TasI	AATT	2 cut(s)	24, 171
TatI	WGTACW	1 cut(s)	82
TfiI	GAWTC	1 cut(s)	293
TscAI	CASTG	3 cut(s)	114, 264, 303
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	1 cut(s)	176
Tsp45I	GTSAC	1 cut(s)	217
TspGWI	ACGGA	1 cut(s)	294
TspRI	CASTG	3 cut(s)	114, 264, 303
Van91I	CCANNNNNTGG	1 cut(s)	113
VpaK11BI	GGWCC	1 cut(s)	116
XceI	RCATGY	1 cut(s)	270
Zsp2I	ATGCAT	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.