Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001133

Physical Location & Seq

Genomic Coordinates Reverse (-)

34934262 .. 34949694

Gene Structure 15433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG195200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGCTGATCATCATGGATGCATTGACCTTGGTGGCCTCTTCAAAGTGACTGCAGGTTATGAGAAACGTAGTATGTACTTTTACTTGACAGCATGCATTGATAAAATTGTGAATACCAGGAATATTGTCCGCAGATCAAAAGCTGATCATCATGGATGCATTGACCTTGGTGGCCTCTTCAAACTGACTGCAGGTTATGAGAAAAGTGTATCAATTTCTGTCTACTCCAACAATGATGTTTTACTGAATCTTCAGTCTCAAACTGAGAAAAGGGTGTTGATAATTTCATCAAAGGTGCCTGATGTTTGCGTGGCTGGTACTCAAATGGAAAATATGGTTTTTGAAATTGTCAGCTCTGATGGTGTTGTTGATGATACTATTCATCATGGCGAGAAAAGTGGCCAATTACATATAGCTACAATAATGGCCGGTTCATCATCCATGGAGGAATCCCTTCGATACACATTCAAGCATGGACGCTGTGTTTTATCTGTGTTCAAGGCTCTTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c_3

Protein Analysis

170

Amino Acids

18.72

Weight (kDa)

7.07

Isoelectric Point (pI)

36.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24275 AT5G24275 AT5G24275 AT5G24275 AT5G24280 AT5G24280 AT5G24280
fragaria_vesca	FvH4_7g31550 FvH4_7g31550 FvH4_7g32260
malus_domestica	MD07G1288100.v1.1
prunus_persica	Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1
pyrus_communis	pycom07g26090
rosa_chinensis	RchiOBHm_Chr1g0380531 RchiOBHm_Chr1g0381531
rosa_laevigata	RLG00000026287
rosa_multiflora	Rmu_co8450373.1_g000001 Rmu_sc0000701.1_g000020 Rmu_sc0002045.1_g000020 Rmu_sc0010633.1_g000011 Rmu_ssc0000015.1_g000008
rosa_roxburghii	Rroxscaffold_4G00279220
rosa_rugosa	Rorug01G0422200 Rorug01G0422300 Rorug06G0084200
rosa_samantha	Rh1AG446800 Rh1BG402100 Rh1CG416300 Rh1CG424300 Rh1DG432300 Rh2DG318300 Rh3BG122000 Rh5AG085500 Rh5AG170300 Rh5BG265400 Rh6AG200100 Rh6AG200300 Rh6AG200400 Rh6BG025800 Rh6BG203500 Rh6BG203600 Rh6BG203800 Rh6CG203700 Rh6CG203800 Rh6CG204000 Rh6DG195200
rosa_wichuraiana	Rw1G038870 Rw1G039500 Rw6G017380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	44, 182
AccB1I	GGYRCC	1 cut(s)	295
AccI	GTMKAC	1 cut(s)	222
AciI	CCGC	1 cut(s)	130
AcoI	YGGCCR	2 cut(s)	400, 426
AcuI	CTGAAG	1 cut(s)	236
AfaI	GTAC	2 cut(s)	77, 319
AgsI	TTSAA	5 cut(s)	43, 181, 344, 469, 499
AjnI	CCWGG	1 cut(s)	116
AluBI	AGCT	3 cut(s)	143, 354, 416
AluI	AGCT	3 cut(s)	143, 354, 416
Alw26I	GTCTC	1 cut(s)	261
AoxI	GGCC	4 cut(s)	34, 172, 400, 426
Asp700I	GAANNNNTTC	1 cut(s)	453
BalI	TGGCCA	1 cut(s)	402
BanI	GGYRCC	1 cut(s)	295
BccI	CCATC	1 cut(s)	353
BciT130I	CCWGG	1 cut(s)	118
BclI	TGATCA	2 cut(s)	7, 145
BcoDI	GTCTC	1 cut(s)	261
BfmI	CTRYAG	2 cut(s)	51, 189
BfuAI	ACCTGC	2 cut(s)	44, 182
Bme1390I	CCNGG	1 cut(s)	118
BmiI	GGNNCC	1 cut(s)	297
BmrFI	CCNGG	1 cut(s)	118
BmsI	GCATC	2 cut(s)	8, 146
BsaJI	CCNNGG	3 cut(s)	28, 166, 441
Bse118I	RCCGGY	1 cut(s)	428
BseBI	CCWGG	1 cut(s)	118
BseDI	CCNNGG	3 cut(s)	28, 166, 441
BseGI	GGATG	3 cut(s)	23, 161, 437
BseMII	CTCAG	1 cut(s)	255
BshFI	GGCC	4 cut(s)	36, 174, 402, 428
BshNI	GGYRCC	1 cut(s)	295
BsiSI	CCGG	1 cut(s)	429
BsmAI	GTCTC	1 cut(s)	261
BsnI	GGCC	4 cut(s)	36, 174, 402, 428
Bsp143I	GATC	3 cut(s)	7, 134, 145
Bsp19I	CCATGG	1 cut(s)	441
BspACI	CCGC	1 cut(s)	130
BspANI	GGCC	4 cut(s)	36, 174, 402, 428
BspCNI	CTCAG	1 cut(s)	256
BspLI	GGNNCC	1 cut(s)	297
BspMAI	CTGCAG	2 cut(s)	55, 193
BspMI	ACCTGC	2 cut(s)	44, 182
BspT107I	GGYRCC	1 cut(s)	295
BsrFI	RCCGGY	1 cut(s)	428
BssAI	RCCGGY	1 cut(s)	428
BssECI	CCNNGG	3 cut(s)	28, 166, 441
BssMI	GATC	3 cut(s)	7, 134, 145
BssT1I	CCWWGG	3 cut(s)	28, 166, 441
Bst2UI	CCWGG	1 cut(s)	118
Bst6I	CTCTTC	2 cut(s)	44, 182
BstC8I	GCNNGC	1 cut(s)	94
BstDEI	CTNAG	1 cut(s)	264
BstDSI	CCRYGG	1 cut(s)	441
BstF5I	GGATG	3 cut(s)	23, 161, 437
BstKTI	GATC	3 cut(s)	10, 137, 148
BstMAI	GTCTC	1 cut(s)	261
BstMBI	GATC	3 cut(s)	7, 134, 145
BstNI	CCWGG	1 cut(s)	118
BstNSI	RCATGY	1 cut(s)	96
BstSCI	CCNGG	1 cut(s)	116
BstSFI	CTRYAG	2 cut(s)	51, 189
BsuRI	GGCC	4 cut(s)	36, 174, 402, 428
BtgI	CCRYGG	1 cut(s)	441
BtsCI	GGATG	3 cut(s)	23, 161, 437
BveI	ACCTGC	2 cut(s)	44, 182
Cac8I	GCNNGC	1 cut(s)	94
Cfr10I	RCCGGY	1 cut(s)	428
CseI	GACGC	1 cut(s)	486
Csp6I	GTAC	2 cut(s)	76, 318
CviAII	CATG	6 cut(s)	14, 93, 152, 386, 442, 473
CviQI	GTAC	2 cut(s)	76, 318
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	3 cut(s)	9, 136, 147
DpnII	GATC	3 cut(s)	7, 134, 145
EaeI	YGGCCR	2 cut(s)	400, 426
Eam1104I	CTCTTC	2 cut(s)	44, 182
EarI	CTCTTC	2 cut(s)	44, 182
Eco130I	CCWWGG	3 cut(s)	28, 166, 441
Eco57I	CTGAAG	1 cut(s)	236
EcoRII	CCWGG	1 cut(s)	116
EcoT14I	CCWWGG	3 cut(s)	28, 166, 441
EcoT22I	ATGCAT	3 cut(s)	23, 98, 161
ErhI	CCWWGG	3 cut(s)	28, 166, 441
FaeI	CATG	6 cut(s)	17, 96, 155, 389, 445, 476
FatI	CATG	6 cut(s)	13, 92, 151, 385, 441, 472
FbaI	TGATCA	2 cut(s)	7, 145
FblI	GTMKAC	1 cut(s)	222
FokI	GGATG	3 cut(s)	30, 168, 424
HaeIII	GGCC	4 cut(s)	36, 174, 402, 428
HapII	CCGG	1 cut(s)	429
HgaI	GACGC	1 cut(s)	486
Hin1II	CATG	6 cut(s)	17, 96, 155, 389, 445, 476
HinfI	GANTC	2 cut(s)	247, 449
HpaII	CCGG	1 cut(s)	429
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	1 cut(s)	358
Hpy8I	GTNNAC	1 cut(s)	223
HpyAV	CCTTC	1 cut(s)	464
HpyCH4IV	ACGT	1 cut(s)	67
HpyCH4V	TGCA	5 cut(s)	21, 53, 96, 159, 191
HpyF3I	CTNAG	1 cut(s)	264
HpySE526I	ACGT	1 cut(s)	67
Hsp92II	CATG	6 cut(s)	17, 96, 155, 389, 445, 476
Ksp22I	TGATCA	2 cut(s)	7, 145
Kzo9I	GATC	3 cut(s)	7, 134, 145
LpnPI	CCDG	7 cut(s)	39, 103, 130, 177, 300, 312, 442
LweI	GCATC	2 cut(s)	8, 146
MaeII	ACGT	1 cut(s)	67
MaeIII	GTNAC	1 cut(s)	46
MalI	GATC	3 cut(s)	9, 136, 147
MboI	GATC	3 cut(s)	7, 134, 145
MboII	GAAGA	3 cut(s)	31, 169, 242
MlsI	TGGCCA	1 cut(s)	402
MluCI	AATT	5 cut(s)	105, 213, 282, 345, 404
MluNI	TGGCCA	1 cut(s)	402
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	3 cut(s)	47, 185, 439
Mox20I	TGGCCA	1 cut(s)	402
Mph1103I	ATGCAT	3 cut(s)	23, 98, 161
MroXI	GAANNNNTTC	1 cut(s)	453
MscI	TGGCCA	1 cut(s)	402
MseI	TTAA	1 cut(s)	511
Msp20I	TGGCCA	1 cut(s)	402
MspI	CCGG	1 cut(s)	429
MspR9I	CCNGG	1 cut(s)	118
MvaI	CCWGG	1 cut(s)	118
NcoI	CCATGG	1 cut(s)	441
NdeII	GATC	3 cut(s)	7, 134, 145
NlaIII	CATG	6 cut(s)	17, 96, 155, 389, 445, 476
NlaIV	GGNNCC	1 cut(s)	297
NmuCI	GTSAC	1 cut(s)	46
NsiI	ATGCAT	3 cut(s)	23, 98, 161
NspI	RCATGY	1 cut(s)	96
PaeI	GCATGC	1 cut(s)	96
PdmI	GAANNNNTTC	1 cut(s)	453
PfeI	GAWTC	2 cut(s)	247, 449
Psp6I	CCWGG	1 cut(s)	116
PspGI	CCWGG	1 cut(s)	116
PspN4I	GGNNCC	1 cut(s)	297
PstI	CTGCAG	2 cut(s)	55, 193
RsaI	GTAC	2 cut(s)	77, 319
RsaNI	GTAC	2 cut(s)	76, 318
SaqAI	TTAA	1 cut(s)	511
Sau3AI	GATC	3 cut(s)	7, 134, 145
ScrFI	CCNGG	1 cut(s)	118
SetI	ASST	9 cut(s)	30, 58, 70, 145, 168, 196, 297, 356, 418
SfaNI	GCATC	2 cut(s)	8, 146
SfcI	CTRYAG	2 cut(s)	51, 189
SphI	GCATGC	1 cut(s)	96
Sse9I	AATT	5 cut(s)	105, 213, 282, 345, 404
SsiI	CCGC	1 cut(s)	130
SspI	AATATT	1 cut(s)	124
StyD4I	CCNGG	1 cut(s)	116
StyI	CCWWGG	3 cut(s)	28, 166, 441
TaiI	ACGT	1 cut(s)	70
TaqI	TCGA	1 cut(s)	457
TasI	AATT	5 cut(s)	105, 213, 282, 345, 404
TatI	WGTACW	1 cut(s)	75
TfiI	GAWTC	2 cut(s)	247, 449
Tru1I	TTAA	1 cut(s)	511
Tru9I	TTAA	1 cut(s)	511
TseFI	GTSAC	1 cut(s)	46
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	3 cut(s)	276, 371, 423
XceI	RCATGY	1 cut(s)	96
XmiI	GTMKAC	1 cut(s)	222
XmnI	GAANNNNTTC	1 cut(s)	453
Zsp2I	ATGCAT	3 cut(s)	23, 98, 161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.