Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000701.1

Orthogroup ID

OG0001133

Physical Location & Seq

Genomic Coordinates Reverse (-)

106538 .. 111986

Gene Structure 5449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000701.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

atgattcaatcaaattgttgtccccttaagcaagttgagggacttgaggcagaggtctcaagttcgagccttgtgtatggaaaagactatgcggggaggccaagcccacctatttggtgtactcgatgcccggagatgttttgggttcaacactttcggatcattttgtatacatttcatgctgatcatcatggatgcattgaccttggtggcctcttcaaagtgactgcaggttatgagaaacgtagaaacattggtttctcagtgattacatgctcttccaacggaagggggcctgattcagtgaagaacgaagtgaagagtgtggaacagttggctcaagagaaaaggcgagctgacctgtctggtcggactgcctcagaagagttcactgtgaataaatctgggattgcagcttgcaaaagccttggagcttttctgatcactactgaccttcagtcaagtagtttaaagtcagtgcaagagatgggttttgcagcagaatctcagccaaaacagggaatgccctttcggaatgcaactatttcaagagagagatatgaactgtctgactcattgtatagatggaaagtttttcatgtgttctactgtatgacaagcttcgctttcgaaaggcacaaggctgatcatcatggatgcattgaccttggtggcctcttcaaactgactccagtatcaatttctgtctactccaacaatgatgttttactgaatcttcagtctcaaactgagagcagggtgttgataatttcatcaaaggtgcctgacgtttgcttggctggtactcaaatggaaaatatggtttttgaaattgtcagccctgatgttgttgatgatactattgagcatgatgagaaaagtggccaattacatatagctacaataatggccggttcatcatccatggaggaatccgttcgatacacattcaagcatggacgctgtacaataccaagacccccacaccctaccttgaagagtagggacttattatattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c_3

Protein Analysis

339

Amino Acids

37.88

Weight (kDa)

6.86

Isoelectric Point (pI)

53.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24275 AT5G24275 AT5G24275 AT5G24275 AT5G24280 AT5G24280 AT5G24280
fragaria_vesca	FvH4_7g31550 FvH4_7g31550 FvH4_7g32260
malus_domestica	MD07G1288100.v1.1
prunus_persica	Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1 Prupe.2G309600_v2.0.a1
pyrus_communis	pycom07g26090
rosa_chinensis	RchiOBHm_Chr1g0380531 RchiOBHm_Chr1g0381531
rosa_laevigata	RLG00000026287
rosa_multiflora	Rmu_co8450373.1_g000001 Rmu_sc0000701.1_g000020 Rmu_sc0002045.1_g000020 Rmu_sc0010633.1_g000011 Rmu_ssc0000015.1_g000008
rosa_roxburghii	Rroxscaffold_4G00279220
rosa_rugosa	Rorug01G0422200 Rorug01G0422300 Rorug06G0084200
rosa_samantha	Rh1AG446800 Rh1BG402100 Rh1CG416300 Rh1CG424300 Rh1DG432300 Rh2DG318300 Rh3BG122000 Rh5AG085500 Rh5AG170300 Rh5BG265400 Rh6AG200100 Rh6AG200300 Rh6AG200400 Rh6BG025800 Rh6BG203500 Rh6BG203600 Rh6BG203800 Rh6CG203700 Rh6CG203800 Rh6CG204000 Rh6DG195200
rosa_wichuraiana	Rw1G038870 Rw1G039500 Rw6G017380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	221
AccB1I	GGYRCC	1 cut(s)	781
AccI	GTMKAC	2 cut(s)	170, 708
AciI	CCGC	1 cut(s)	92
AclWI	GGATC	1 cut(s)	167
AcoI	YGGCCR	2 cut(s)	883, 909
AcuI	CTGAAG	2 cut(s)	440, 722
AfaI	GTAC	3 cut(s)	121, 805, 967
AfiI	CCNNNNNNNGG	2 cut(s)	288, 518
AflII	CTTAAG	1 cut(s)	26
AgsI	TTSAA	8 cut(s)	8, 149, 220, 549, 682, 830, 952, 997
AhdI	GACNNNNNGTC	1 cut(s)	457
AluBI	AGCT	5 cut(s)	356, 416, 434, 621, 899
AluI	AGCT	5 cut(s)	356, 416, 434, 621, 899
Alw26I	GTCTC	2 cut(s)	61, 747
AlwI	GGATC	1 cut(s)	167
AoxI	GGCC	6 cut(s)	98, 211, 293, 673, 883, 909
ApeKI	GCWGC	2 cut(s)	413, 497
Asp700I	GAANNNNTTC	1 cut(s)	936
AspS9I	GGNCC	1 cut(s)	293
AsuC2I	CCSGG	1 cut(s)	131
AsuII	TTCGAA	1 cut(s)	630
BaeI	ACNNNNGTAYC	2 cut(s)	678, 711
BalI	TGGCCA	1 cut(s)	885
BanI	GGYRCC	1 cut(s)	781
BbvI	GCAGC	2 cut(s)	425, 509
BccI	CCATC	2 cut(s)	481, 579
BclI	TGATCA	3 cut(s)	184, 441, 646
BcnI	CCSGG	1 cut(s)	131
BcoDI	GTCTC	2 cut(s)	61, 747
BfmI	CTRYAG	1 cut(s)	228
BfrI	CTTAAG	1 cut(s)	26
BfuAI	ACCTGC	1 cut(s)	221
BisI	GCNGC	2 cut(s)	414, 498
BlsI	GCNGC	2 cut(s)	415, 499
Bme1390I	CCNGG	1 cut(s)	131
BmeRI	GACNNNNNGTC	1 cut(s)	457
BmgT120I	GGNCC	1 cut(s)	293
BmiI	GGNNCC	2 cut(s)	294, 783
BmrFI	CCNGG	1 cut(s)	131
BmsI	GCATC	3 cut(s)	116, 185, 647
BpmI	CTGGAG	1 cut(s)	675
Bpu14I	TTCGAA	1 cut(s)	630
BpuEI	CTTGAG	3 cut(s)	43, 65, 324
BpuMI	CCSGG	1 cut(s)	131
BsaI	GGTCTC	1 cut(s)	61
BsaJI	CCNNGG	4 cut(s)	205, 427, 667, 924
Bsc4I	CCNNNNNNNGG	2 cut(s)	288, 518
Bse118I	RCCGGY	1 cut(s)	911
Bse1I	ACTGG	1 cut(s)	692
BseDI	CCNNGG	4 cut(s)	205, 427, 667, 924
BseGI	GGATG	3 cut(s)	200, 662, 920
BseLI	CCNNNNNNNGG	2 cut(s)	288, 518
BseMII	CTCAG	4 cut(s)	276, 393, 521, 741
BseNI	ACTGG	1 cut(s)	692
BseXI	GCAGC	2 cut(s)	425, 509
BshFI	GGCC	6 cut(s)	100, 213, 295, 675, 885, 911
BshNI	GGYRCC	1 cut(s)	781
BsiSI	CCGG	2 cut(s)	131, 912
BslFI	GGGAC	2 cut(s)	6, 54
BslI	CCNNNNNNNGG	2 cut(s)	288, 518
BsmAI	GTCTC	2 cut(s)	61, 747
BsmFI	GGGAC	2 cut(s)	6, 54
BsmI	GAATGC	2 cut(s)	528, 541
BsnI	GGCC	6 cut(s)	100, 213, 295, 675, 885, 911
Bso31I	GGTCTC	1 cut(s)	61
Bsp119I	TTCGAA	1 cut(s)	630
Bsp1407I	TGTACA	1 cut(s)	965
Bsp143I	GATC	4 cut(s)	159, 184, 441, 646
Bsp19I	CCATGG	1 cut(s)	924
BspACI	CCGC	1 cut(s)	92
BspANI	GGCC	6 cut(s)	100, 213, 295, 675, 885, 911
BspCNI	CTCAG	4 cut(s)	275, 392, 520, 742
BspLI	GGNNCC	2 cut(s)	294, 783
BspMAI	CTGCAG	1 cut(s)	232
BspMI	ACCTGC	1 cut(s)	221
BspPI	GGATC	1 cut(s)	167
BspQI	GCTCTTC	1 cut(s)	283
BspT104I	TTCGAA	1 cut(s)	630
BspT107I	GGYRCC	1 cut(s)	781
BspTI	CTTAAG	1 cut(s)	26
BspTNI	GGTCTC	1 cut(s)	61
BsrFI	RCCGGY	1 cut(s)	911
BsrGI	TGTACA	1 cut(s)	965
BsrI	ACTGG	1 cut(s)	692
BssAI	RCCGGY	1 cut(s)	911
BssECI	CCNNGG	4 cut(s)	205, 427, 667, 924
BssMI	GATC	4 cut(s)	159, 184, 441, 646
BssNAI	GTATAC	1 cut(s)	171
BssT1I	CCWWGG	4 cut(s)	205, 427, 667, 924
Bst1107I	GTATAC	1 cut(s)	171
Bst4CI	ACNGT	4 cut(s)	333, 394, 567, 611
Bst6I	CTCTTC	6 cut(s)	221, 283, 314, 378, 683, 992
BstAFI	CTTAAG	1 cut(s)	26
BstAUI	TGTACA	1 cut(s)	965
BstBI	TTCGAA	1 cut(s)	630
BstC8I	GCNNGC	2 cut(s)	354, 418
BstDEI	CTNAG	4 cut(s)	262, 379, 507, 750
BstDSI	CCRYGG	1 cut(s)	924
BstF5I	GGATG	3 cut(s)	200, 662, 920
BstKTI	GATC	4 cut(s)	162, 187, 444, 649
BstMAI	GTCTC	2 cut(s)	61, 747
BstMBI	GATC	4 cut(s)	159, 184, 441, 646
BstNSI	RCATGY	1 cut(s)	276
BstSCI	CCNGG	1 cut(s)	129
BstSFI	CTRYAG	1 cut(s)	228
BstV1I	GCAGC	2 cut(s)	425, 509
BstXI	CCANNNNNNTGG	1 cut(s)	114
BstZ17I	GTATAC	1 cut(s)	171
BsuRI	GGCC	6 cut(s)	100, 213, 295, 675, 885, 911
BtgI	CCRYGG	1 cut(s)	924
BtsCI	GGATG	3 cut(s)	200, 662, 920
BtsIMutI	CAGTG	4 cut(s)	270, 309, 390, 483
BveI	ACCTGC	1 cut(s)	221
Cac8I	GCNNGC	2 cut(s)	354, 418
Cfr10I	RCCGGY	1 cut(s)	911
Cfr13I	GGNCC	1 cut(s)	293
CseI	GACGC	1 cut(s)	969
Csp6I	GTAC	3 cut(s)	120, 804, 966
CviAII	CATG	8 cut(s)	179, 191, 273, 599, 653, 869, 925, 956
CviQI	GTAC	3 cut(s)	120, 804, 966
DdeI	CTNAG	4 cut(s)	262, 379, 507, 750
DpnI	GATC	4 cut(s)	161, 186, 443, 648
DpnII	GATC	4 cut(s)	159, 184, 441, 646
DraI	TTTAAA	1 cut(s)	471
DriI	GACNNNNNGTC	1 cut(s)	457
EaeI	YGGCCR	2 cut(s)	883, 909
Eam1104I	CTCTTC	6 cut(s)	221, 283, 314, 378, 683, 992
Eam1105I	GACNNNNNGTC	1 cut(s)	457
EarI	CTCTTC	6 cut(s)	221, 283, 314, 378, 683, 992
Eco130I	CCWWGG	4 cut(s)	205, 427, 667, 924
Eco31I	GGTCTC	1 cut(s)	61
Eco57I	CTGAAG	2 cut(s)	440, 722
EcoO109I	RGGNCCY	1 cut(s)	293
EcoT14I	CCWWGG	4 cut(s)	205, 427, 667, 924
EcoT22I	ATGCAT	2 cut(s)	200, 662
ErhI	CCWWGG	4 cut(s)	205, 427, 667, 924
FaeI	CATG	8 cut(s)	182, 194, 276, 602, 656, 872, 928, 959
FalI	AAGNNNNNCTT	2 cut(s)	610, 642
FaqI	GGGAC	2 cut(s)	6, 54
FatI	CATG	8 cut(s)	178, 190, 272, 598, 652, 868, 924, 955
FauI	CCCGC	1 cut(s)	85
FbaI	TGATCA	3 cut(s)	184, 441, 646
FblI	GTMKAC	2 cut(s)	170, 708
Fnu4HI	GCNGC	2 cut(s)	414, 498
FokI	GGATG	3 cut(s)	207, 669, 907
Fsp4HI	GCNGC	2 cut(s)	414, 498
GluI	GCNGC	2 cut(s)	414, 498
GsuI	CTGGAG	1 cut(s)	675
HaeIII	GGCC	6 cut(s)	100, 213, 295, 675, 885, 911
HapII	CCGG	2 cut(s)	131, 912
HgaI	GACGC	1 cut(s)	969
Hin1II	CATG	8 cut(s)	182, 194, 276, 602, 656, 872, 928, 959
HindIII	AAGCTT	1 cut(s)	619
HinfI	GANTC	7 cut(s)	4, 299, 503, 572, 688, 733, 932
HpaII	CCGG	2 cut(s)	131, 912
Hpy166II	GTNNAC	4 cut(s)	120, 171, 390, 709
Hpy188I	TCNGA	6 cut(s)	159, 372, 382, 441, 534, 571
Hpy188III	TCNNGA	2 cut(s)	341, 549
Hpy8I	GTNNAC	4 cut(s)	120, 171, 390, 709
HpyAV	CCTTC	2 cut(s)	282, 464
HpyCH4III	ACNGT	4 cut(s)	333, 394, 567, 611
HpyCH4IV	ACGT	2 cut(s)	244, 789
HpyCH4V	TGCA	8 cut(s)	198, 230, 413, 420, 481, 497, 539, 660
HpyF3I	CTNAG	4 cut(s)	262, 379, 507, 750
HpySE526I	ACGT	2 cut(s)	244, 789
Hsp92II	CATG	8 cut(s)	182, 194, 276, 602, 656, 872, 928, 959
Ksp22I	TGATCA	3 cut(s)	184, 441, 646
Kzo9I	GATC	4 cut(s)	159, 184, 441, 646
LguI	GCTCTTC	1 cut(s)	283
LmnI	GCTCC	1 cut(s)	431
Lsp1109I	GCAGC	2 cut(s)	425, 509
LweI	GCATC	3 cut(s)	116, 185, 647
MaeII	ACGT	2 cut(s)	244, 789
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	4 cut(s)	161, 186, 443, 648
MboI	GATC	4 cut(s)	159, 184, 441, 646
MboII	GAAGA	8 cut(s)	208, 270, 319, 331, 395, 670, 728, 1009
MlsI	TGGCCA	1 cut(s)	885
MluCI	AATT	5 cut(s)	13, 699, 768, 831, 887
MluNI	TGGCCA	1 cut(s)	885
MlyI	GAGTC	2 cut(s)	566, 682
MmeI	TCCRAC	3 cut(s)	306, 350, 738
MnlI	CCTC	8 cut(s)	31, 40, 46, 90, 224, 388, 686, 922
Mox20I	TGGCCA	1 cut(s)	885
Mph1103I	ATGCAT	2 cut(s)	200, 662
MroXI	GAANNNNTTC	1 cut(s)	936
MscI	TGGCCA	1 cut(s)	885
MseI	TTAA	3 cut(s)	27, 470, 1018
Msp20I	TGGCCA	1 cut(s)	885
MspCI	CTTAAG	1 cut(s)	26
MspI	CCGG	2 cut(s)	131, 912
MspR9I	CCNGG	1 cut(s)	131
Mva1269I	GAATGC	2 cut(s)	528, 541
NciI	CCSGG	1 cut(s)	131
NcoI	CCATGG	1 cut(s)	924
NdeII	GATC	4 cut(s)	159, 184, 441, 646
NlaIII	CATG	8 cut(s)	182, 194, 276, 602, 656, 872, 928, 959
NlaIV	GGNNCC	2 cut(s)	294, 783
NmuCI	GTSAC	1 cut(s)	223
NsiI	ATGCAT	2 cut(s)	200, 662
NspI	RCATGY	1 cut(s)	276
NspV	TTCGAA	1 cut(s)	630
PciSI	GCTCTTC	1 cut(s)	283
PctI	GAATGC	2 cut(s)	528, 541
PdmI	GAANNNNTTC	1 cut(s)	936
PfeI	GAWTC	5 cut(s)	4, 299, 503, 733, 932
PkrI	GCNGC	2 cut(s)	415, 499
PleI	GAGTC	2 cut(s)	566, 682
PpsI	GAGTC	2 cut(s)	566, 682
PspN4I	GGNNCC	2 cut(s)	294, 783
PspPI	GGNCC	1 cut(s)	293
PstI	CTGCAG	1 cut(s)	232
RsaI	GTAC	3 cut(s)	121, 805, 967
RsaNI	GTAC	3 cut(s)	120, 804, 966
SapI	GCTCTTC	1 cut(s)	283
SaqAI	TTAA	3 cut(s)	27, 470, 1018
SatI	GCNGC	2 cut(s)	414, 498
Sau3AI	GATC	4 cut(s)	159, 184, 441, 646
Sau96I	GGNCC	1 cut(s)	293
SchI	GAGTC	2 cut(s)	566, 682
ScrFI	CCNGG	1 cut(s)	131
SfaNI	GCATC	3 cut(s)	116, 185, 647
SfcI	CTRYAG	1 cut(s)	228
SfuI	TTCGAA	1 cut(s)	630
SmlI	CTYRAG	4 cut(s)	26, 44, 58, 339
SmoI	CTYRAG	4 cut(s)	26, 44, 58, 339
Sse9I	AATT	5 cut(s)	13, 699, 768, 831, 887
SsiI	CCGC	1 cut(s)	92
StyD4I	CCNGG	1 cut(s)	129
StyI	CCWWGG	4 cut(s)	205, 427, 667, 924
TaaI	ACNGT	4 cut(s)	333, 394, 567, 611
TaiI	ACGT	2 cut(s)	247, 792
TaqI	TCGA	4 cut(s)	65, 124, 630, 940
TasI	AATT	5 cut(s)	13, 699, 768, 831, 887
TatI	WGTACW	2 cut(s)	119, 965
TfiI	GAWTC	5 cut(s)	4, 299, 503, 733, 932
Tru1I	TTAA	3 cut(s)	27, 470, 1018
Tru9I	TTAA	3 cut(s)	27, 470, 1018
TscAI	CASTG	4 cut(s)	270, 309, 397, 483
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	2 cut(s)	413, 497
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	5 cut(s)	167, 576, 587, 762, 906
TspGWI	ACGGA	2 cut(s)	300, 925
TspRI	CASTG	4 cut(s)	270, 309, 397, 483
Vha464I	CTTAAG	1 cut(s)	26
XceI	RCATGY	1 cut(s)	276
XmiI	GTMKAC	2 cut(s)	170, 708
XmnI	GAANNNNTTC	1 cut(s)	936
Zsp2I	ATGCAT	2 cut(s)	200, 662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.