Rh6AG200100

gamma-irradiation and mitomycin c induced

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001133
Physical Location & Seq
Reverse (-)
35961838 .. 35973583
11746 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG200100.1

Sequence Viewer

Length: 486 bp
ATGACGGAGGTACATGATGATCCTTCAAATGCGCCAGTGGATGGTCCAACCCAATGGCCGTTGTGCCATTTGGAGGAACTACTGGTAGAGCTTATTGCAATTGCTGCTGATCATCATGGATGCATTGACCTTGGTGGCCTCTTCAAAGTGACTGCAGGTTATGAGAAACGTAGTATGTACTTTTACTTGACAGCATGCATTGATAAAAATGTGAATACCAGGAATATTGTCCGCAGATCAAAAGTGCCTGACGTTTGCATGGCTGGTACTCAAATGGAAAATATGGTTTTTGAAATTGTCAGCTCTGATGGTGTTGTTGATGATACTATTCATCATGACGAGAAAAGTGGCCAATTACATATAGCTACAATAATGGACGGTTCATCATCCATGGAGGAATCCCTTCGATACACATTCAAGCATGGACGCTGTACAATACCAAGACCCCCACACCCTACCTCAAAGAGTAGGGACTTATTATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HATPase_c_3

Protein Analysis

161

Amino Acids

18.02

Weight (kDa)

5.5

Isoelectric Point (pI)

48.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 146
AccB7I CCANNNNNTGG 1 cut(s) 41
AciI CCGC 1 cut(s) 232
AclWI GGATC 1 cut(s) 14
AcoI YGGCCR 2 cut(s) 56, 349
AfaI GTAC 4 cut(s) 12, 179, 268, 433
AfiI CCNNNNNNNGG 2 cut(s) 41, 73
AgsI TTSAA 4 cut(s) 27, 145, 293, 418
AjnI CCWGG 1 cut(s) 218
AluBI AGCT 3 cut(s) 91, 303, 365
AluI AGCT 3 cut(s) 91, 303, 365
AlwI GGATC 1 cut(s) 14
AoxI GGCC 3 cut(s) 56, 136, 349
ApeKI GCWGC 1 cut(s) 104
Asp700I GAANNNNTTC 1 cut(s) 402
AspLEI GCGC 1 cut(s) 34
AspS9I GGNCC 1 cut(s) 44
AvaII GGWCC 1 cut(s) 44
BalI TGGCCA 1 cut(s) 351
BbvI GCAGC 1 cut(s) 91
BccI CCATC 2 cut(s) 35, 302
BceAI ACGGC 1 cut(s) 43
BciT130I CCWGG 1 cut(s) 220
BclI TGATCA 1 cut(s) 109
BfmI CTRYAG 1 cut(s) 153
BfuAI ACCTGC 1 cut(s) 146
BisI GCNGC 1 cut(s) 105
BlsI GCNGC 1 cut(s) 106
Bme1390I CCNGG 1 cut(s) 220
Bme18I GGWCC 1 cut(s) 44
BmgT120I GGNCC 1 cut(s) 44
BmrFI CCNGG 1 cut(s) 220
BmsI GCATC 1 cut(s) 110
BsaJI CCNNGG 2 cut(s) 130, 390
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 73
Bse1I ACTGG 2 cut(s) 35, 87
BseBI CCWGG 1 cut(s) 220
BseDI CCNNGG 2 cut(s) 130, 390
BseGI GGATG 3 cut(s) 46, 125, 386
BseLI CCNNNNNNNGG 2 cut(s) 41, 73
BseNI ACTGG 2 cut(s) 35, 87
BseXI GCAGC 1 cut(s) 91
BshFI GGCC 3 cut(s) 58, 138, 351
BslI CCNNNNNNNGG 2 cut(s) 41, 73
BsnI GGCC 3 cut(s) 58, 138, 351
Bsp1407I TGTACA 1 cut(s) 431
Bsp143I GATC 3 cut(s) 19, 109, 236
Bsp19I CCATGG 1 cut(s) 390
BspACI CCGC 1 cut(s) 232
BspANI GGCC 3 cut(s) 58, 138, 351
BspHI TCATGA 1 cut(s) 334
BspMAI CTGCAG 1 cut(s) 157
BspMI ACCTGC 1 cut(s) 146
BspPI GGATC 1 cut(s) 14
BsrGI TGTACA 1 cut(s) 431
BsrI ACTGG 2 cut(s) 35, 87
BssECI CCNNGG 2 cut(s) 130, 390
BssMI GATC 3 cut(s) 19, 109, 236
BssT1I CCWWGG 2 cut(s) 130, 390
Bst2UI CCWGG 1 cut(s) 220
Bst4CI ACNGT 1 cut(s) 380
Bst6I CTCTTC 1 cut(s) 146
BstAPI GCANNNNNTGC 1 cut(s) 104
BstAUI TGTACA 1 cut(s) 431
BstC8I GCNNGC 1 cut(s) 196
BstDSI CCRYGG 1 cut(s) 390
BstF5I GGATG 3 cut(s) 46, 125, 386
BstHHI GCGC 1 cut(s) 34
BstKTI GATC 3 cut(s) 22, 112, 239
BstMBI GATC 3 cut(s) 19, 109, 236
BstMWI GCNNNNNNNGC 1 cut(s) 104
BstNI CCWGG 1 cut(s) 220
BstNSI RCATGY 1 cut(s) 198
BstSCI CCNGG 1 cut(s) 218
BstSFI CTRYAG 1 cut(s) 153
BstV1I GCAGC 1 cut(s) 91
BstXI CCANNNNNNTGG 1 cut(s) 54
BsuRI GGCC 3 cut(s) 58, 138, 351
BtgI CCRYGG 1 cut(s) 390
BtsCI GGATG 3 cut(s) 46, 125, 386
BtsIMutI CAGTG 1 cut(s) 42
BveI ACCTGC 1 cut(s) 146
Cac8I GCNNGC 1 cut(s) 196
CciI TCATGA 1 cut(s) 334
CfoI GCGC 1 cut(s) 34
Cfr13I GGNCC 1 cut(s) 44
CseI GACGC 1 cut(s) 435
Csp6I GTAC 4 cut(s) 11, 178, 267, 432
CviAII CATG 7 cut(s) 14, 116, 195, 259, 335, 391, 422
CviJI RGCY 7 cut(s) 58, 91, 138, 263, 303, 351, 365
CviKI_1 RGCY 7 cut(s) 58, 91, 138, 263, 303, 351, 365
CviQI GTAC 4 cut(s) 11, 178, 267, 432
DpnI GATC 3 cut(s) 21, 111, 238
DpnII GATC 3 cut(s) 19, 109, 236
EaeI YGGCCR 2 cut(s) 56, 349
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
Eco130I CCWWGG 2 cut(s) 130, 390
Eco47I GGWCC 1 cut(s) 44
EcoRII CCWGG 1 cut(s) 218
EcoT14I CCWWGG 2 cut(s) 130, 390
EcoT22I ATGCAT 2 cut(s) 125, 200
ErhI CCWWGG 2 cut(s) 130, 390
FaeI CATG 7 cut(s) 17, 119, 198, 262, 338, 394, 425
FatI CATG 7 cut(s) 13, 115, 194, 258, 334, 390, 421
FbaI TGATCA 1 cut(s) 109
Fnu4HI GCNGC 1 cut(s) 105
FokI GGATG 3 cut(s) 53, 132, 373
Fsp4HI GCNGC 1 cut(s) 105
GlaI GCGC 1 cut(s) 33
GluI GCNGC 1 cut(s) 105
HaeIII GGCC 3 cut(s) 58, 138, 351
HgaI GACGC 1 cut(s) 435
HhaI GCGC 1 cut(s) 34
Hin1II CATG 7 cut(s) 17, 119, 198, 262, 338, 394, 425
Hin6I GCGC 1 cut(s) 32
HinP1I GCGC 1 cut(s) 32
HinfI GANTC 1 cut(s) 398
Hpy188I TCNGA 1 cut(s) 307
Hpy188III TCNNGA 1 cut(s) 335
HpyAV CCTTC 2 cut(s) 33, 413
HpyCH4III ACNGT 1 cut(s) 380
HpyCH4IV ACGT 2 cut(s) 169, 252
HpyCH4V TGCA 5 cut(s) 98, 123, 155, 198, 258
HpyF10VI GCNNNNNNNGC 1 cut(s) 104
HpySE526I ACGT 2 cut(s) 169, 252
Hsp92II CATG 7 cut(s) 17, 119, 198, 262, 338, 394, 425
HspAI GCGC 1 cut(s) 32
Ksp22I TGATCA 1 cut(s) 109
Kzo9I GATC 3 cut(s) 19, 109, 236
LpnPI CCDG 7 cut(s) 48, 68, 141, 205, 232, 249, 261
Lsp1109I GCAGC 1 cut(s) 91
LweI GCATC 1 cut(s) 110
MaeII ACGT 2 cut(s) 169, 252
MaeIII GTNAC 1 cut(s) 148
MalI GATC 3 cut(s) 21, 111, 238
MboI GATC 3 cut(s) 19, 109, 236
MboII GAAGA 1 cut(s) 133
MfeI CAATTG 1 cut(s) 99
MlsI TGGCCA 1 cut(s) 351
MluCI AATT 3 cut(s) 99, 294, 353
MluNI TGGCCA 1 cut(s) 351
MmeI TCCRAC 1 cut(s) 71
MnlI CCTC 4 cut(s) 67, 149, 388, 469
Mox20I TGGCCA 1 cut(s) 351
Mph1103I ATGCAT 2 cut(s) 125, 200
MroXI GAANNNNTTC 1 cut(s) 402
MscI TGGCCA 1 cut(s) 351
MseI TTAA 1 cut(s) 484
Msp20I TGGCCA 1 cut(s) 351
MspR9I CCNGG 1 cut(s) 220
MunI CAATTG 1 cut(s) 99
MvaI CCWGG 1 cut(s) 220
MwoI GCNNNNNNNGC 1 cut(s) 104
NcoI CCATGG 1 cut(s) 390
NdeII GATC 3 cut(s) 19, 109, 236
NlaIII CATG 7 cut(s) 17, 119, 198, 262, 338, 394, 425
NmuCI GTSAC 1 cut(s) 148
NsiI ATGCAT 2 cut(s) 125, 200
NspI RCATGY 1 cut(s) 198
PaeI GCATGC 1 cut(s) 198
PagI TCATGA 1 cut(s) 334
PdmI GAANNNNTTC 1 cut(s) 402
PfeI GAWTC 1 cut(s) 398
PflMI CCANNNNNTGG 1 cut(s) 41
PkrI GCNGC 1 cut(s) 106
Psp6I CCWGG 1 cut(s) 218
PspGI CCWGG 1 cut(s) 218
PspPI GGNCC 1 cut(s) 44
PstI CTGCAG 1 cut(s) 157
RsaI GTAC 4 cut(s) 12, 179, 268, 433
RsaNI GTAC 4 cut(s) 11, 178, 267, 432
SaqAI TTAA 1 cut(s) 484
SatI GCNGC 1 cut(s) 105
Sau3AI GATC 3 cut(s) 19, 109, 236
Sau96I GGNCC 1 cut(s) 44
ScrFI CCNGG 1 cut(s) 220
SetI ASST 9 cut(s) 12, 93, 132, 160, 172, 255, 305, 367, 461
SfaNI GCATC 1 cut(s) 110
SfcI CTRYAG 1 cut(s) 153
SinI GGWCC 1 cut(s) 44
SphI GCATGC 1 cut(s) 198
Sse9I AATT 3 cut(s) 99, 294, 353
SsiI CCGC 1 cut(s) 232
SspI AATATT 1 cut(s) 226
StyD4I CCNGG 1 cut(s) 218
StyI CCWWGG 2 cut(s) 130, 390
TaaI ACNGT 1 cut(s) 380
TaiI ACGT 2 cut(s) 172, 255
TaqI TCGA 1 cut(s) 406
TasI AATT 3 cut(s) 99, 294, 353
TatI WGTACW 2 cut(s) 177, 431
TfiI GAWTC 1 cut(s) 398
Tru1I TTAA 1 cut(s) 484
Tru9I TTAA 1 cut(s) 484
TscAI CASTG 1 cut(s) 42
TseFI GTSAC 1 cut(s) 148
TseI GCWGC 1 cut(s) 104
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 2 cut(s) 320, 372
TspGWI ACGGA 1 cut(s) 20
TspRI CASTG 1 cut(s) 42
Van91I CCANNNNNTGG 1 cut(s) 41
VpaK11BI GGWCC 1 cut(s) 44
XceI RCATGY 1 cut(s) 198
XmnI GAANNNNTTC 1 cut(s) 402
Zsp2I ATGCAT 2 cut(s) 125, 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.