gamma-irradiation and mitomycin c induced
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| HATPase_c_3 | PF13589 | 124 - 274 | 2.2e-10 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1503 |
| AarI | CACCTGC | 1 cut(s) | 4312 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1616 |
| Acc36I | ACCTGC | 2 cut(s) | 3029, 4312 |
| AccB1I | GGYRCC | 1 cut(s) | 3142 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2068 |
| AccI | GTMKAC | 1 cut(s) | 371 |
| AccII | CGCG | 4 cut(s) | 2289, 2600, 2708, 3678 |
| AciI | CCGC | 6 cut(s) | 127, 157, 1258, 2600, 3325, 3676 |
| AclI | AACGTT | 1 cut(s) | 1773 |
| AclWI | GGATC | 7 cut(s) | 19, 333, 1308, 2193, 4002, 4202, 4680 |
| AcoI | YGGCCR | 4 cut(s) | 1255, 2133, 3247, 3322 |
| AcyI | GRCGYC | 1 cut(s) | 2014 |
| AdeI | CACNNNGTG | 1 cut(s) | 1946 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 508, 623, 2068, 4115, 4160 |
| AflII | CTTAAG | 2 cut(s) | 2306, 2399 |
| AflIII | ACRYGT | 1 cut(s) | 318 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1230 |
| AhlI | ACTAGT | 1 cut(s) | 3941 |
| AjiI | CACGTC | 1 cut(s) | 1710 |
| AjnI | CCWGG | 5 cut(s) | 502, 2146, 2181, 2800, 4370 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 4670, 4702 |
| Alw21I | GWGCWC | 5 cut(s) | 787, 3759, 4030, 4356, 4734 |
| AlwI | GGATC | 7 cut(s) | 19, 333, 1308, 2193, 4002, 4202, 4680 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 4211 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2254, 2286 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 3300 |
| AspLEI | GCGC | 3 cut(s) | 2289, 2708, 4081 |
| AspS9I | GGNCC | 6 cut(s) | 500, 644, 1040, 2294, 2473, 2804 |
| AsuHPI | GGTGA | 8 cut(s) | 533, 557, 1016, 1616, 1841, 2614, 4175, 4309 |
| AsuNHI | GCTAGC | 1 cut(s) | 4742 |
| AvaII | GGWCC | 5 cut(s) | 644, 1040, 2294, 2473, 2804 |
| BaeGI | GKGCMC | 1 cut(s) | 4665 |
| BalI | TGGCCA | 2 cut(s) | 2135, 3249 |
| BanI | GGYRCC | 1 cut(s) | 3142 |
| BanII | GRGCYC | 5 cut(s) | 787, 3759, 4030, 4356, 4734 |
| BauI | CACGAG | 1 cut(s) | 4392 |
| BbsI | GAAGAC | 5 cut(s) | 281, 770, 950, 1412, 1614 |
| Bbv12I | GWGCWC | 5 cut(s) | 787, 3759, 4030, 4356, 4734 |
| BceAI | ACGGC | 4 cut(s) | 404, 601, 3003, 4189 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1827, 1861 |
| BciT130I | CCWGG | 5 cut(s) | 504, 2148, 2183, 2802, 4372 |
| BciVI | GTATCC | 1 cut(s) | 1897 |
| BclI | TGATCA | 6 cut(s) | 2488, 2896, 2992, 3457, 4554, 4584 |
| BcuI | ACTAGT | 1 cut(s) | 3941 |
| BfaI | CTAG | 6 cut(s) | 200, 1415, 2972, 3858, 3942, 4743 |
| BfmI | CTRYAG | 9 cut(s) | 531, 648, 2541, 2810, 3036, 3429, 3831, 4003, 4305 |
| BfrI | CTTAAG | 2 cut(s) | 2306, 2399 |
| BfuAI | ACCTGC | 2 cut(s) | 3029, 4312 |
| BfuI | GTATCC | 1 cut(s) | 1897 |
| BglII | AGATCT | 2 cut(s) | 394, 2021 |
| Bme1390I | CCNGG | 5 cut(s) | 504, 2148, 2183, 2802, 4372 |
| Bme18I | GGWCC | 5 cut(s) | 644, 1040, 2294, 2473, 2804 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1230 |
| BmgBI | CACGTC | 1 cut(s) | 1710 |
| BmgT120I | GGNCC | 6 cut(s) | 500, 644, 1040, 2294, 2473, 2804 |
| BmiI | GGNNCC | 8 cut(s) | 2296, 2474, 2784, 3144, 3426, 3558, 4233, 4476 |
| BmrFI | CCNGG | 5 cut(s) | 504, 2148, 2183, 2802, 4372 |
| BmtI | GCTAGC | 1 cut(s) | 4746 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2299 |
| BpiI | GAAGAC | 5 cut(s) | 281, 770, 950, 1412, 1614 |
| BpmI | CTGGAG | 6 cut(s) | 771, 863, 1086, 2103, 3683, 4044 |
| Bpu10I | CCTNAGC | 1 cut(s) | 72 |
| BpuEI | CTTGAG | 5 cut(s) | 1289, 1490, 2085, 4052, 4737 |
| Bsa29I | ATCGAT | 1 cut(s) | 3800 |
| BsaAI | YACGTR | 2 cut(s) | 2914, 2984 |
| BsaBI | GATNNNNATC | 1 cut(s) | 4281 |
| BsaHI | GRCGYC | 1 cut(s) | 2014 |
| BsaI | GGTCTC | 2 cut(s) | 1217, 4322 |
| BsaJI | CCNNGG | 7 cut(s) | 502, 503, 2250, 3013, 3503, 4312, 4371 |
| BsaWI | WCCGGW | 3 cut(s) | 2335, 2354, 4492 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1737, 1767 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 508, 623, 2068, 4115, 4160 |
| Bse118I | RCCGGY | 1 cut(s) | 3275 |
| Bse3DI | GCAATG | 2 cut(s) | 1042, 3608 |
| Bse8I | GATNNNNATC | 1 cut(s) | 4281 |
| BseBI | CCWGG | 5 cut(s) | 504, 2148, 2183, 2802, 4372 |
| BseCI | ATCGAT | 1 cut(s) | 3800 |
| BseDI | CCNNGG | 7 cut(s) | 502, 503, 2250, 3013, 3503, 4312, 4371 |
| BseJI | GATNNNNATC | 1 cut(s) | 4281 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 508, 623, 2068, 4115, 4160 |
| BseMI | GCAATG | 2 cut(s) | 1042, 3608 |
| BseMII | CTCAG | 9 cut(s) | 63, 263, 737, 981, 1957, 1977, 2418, 3102, 4333 |
| BseRI | GAGGAG | 2 cut(s) | 1332, 3061 |
| BseSI | GKGCMC | 1 cut(s) | 4665 |
| Bsh1236I | CGCG | 4 cut(s) | 2289, 2600, 2708, 3678 |
| BshNI | GGYRCC | 1 cut(s) | 3142 |
| BshVI | ATCGAT | 1 cut(s) | 3800 |
| BsiHKAI | GWGCWC | 5 cut(s) | 787, 3759, 4030, 4356, 4734 |
| BsiSI | CCGG | 5 cut(s) | 2336, 2355, 3276, 3338, 4493 |
| BsiWI | CGTACG | 1 cut(s) | 2984 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 508, 623, 2068, 4115, 4160 |
| BsmBI | CGTCTC | 1 cut(s) | 2002 |
| BsmI | GAATGC | 1 cut(s) | 1027 |
| Bso31I | GGTCTC | 2 cut(s) | 1217, 4322 |
| Bsp1286I | GDGCHC | 6 cut(s) | 787, 3759, 4030, 4356, 4665, 4734 |
| Bsp1407I | TGTACA | 2 cut(s) | 2753, 4042 |
| Bsp19I | CCATGG | 1 cut(s) | 4312 |
| BspACI | CCGC | 6 cut(s) | 127, 157, 1258, 2600, 3325, 3676 |
| BspCNI | CTCAG | 9 cut(s) | 64, 264, 738, 982, 1956, 1978, 2419, 3103, 4332 |
| BspDI | ATCGAT | 1 cut(s) | 3800 |
| BspFNI | CGCG | 4 cut(s) | 2289, 2600, 2708, 3678 |
| BspHI | TCATGA | 1 cut(s) | 3232 |
| BspLI | GGNNCC | 8 cut(s) | 2296, 2474, 2784, 3144, 3426, 3558, 4233, 4476 |
| BspMAI | CTGCAG | 3 cut(s) | 3040, 3835, 4309 |
| BspMI | ACCTGC | 2 cut(s) | 3029, 4312 |
| BspOI | GCTAGC | 1 cut(s) | 4746 |
| BspPI | GGATC | 7 cut(s) | 19, 333, 1308, 2193, 4002, 4202, 4680 |
| BspT107I | GGYRCC | 1 cut(s) | 3142 |
| BspTI | CTTAAG | 2 cut(s) | 2306, 2399 |
| BspTNI | GGTCTC | 2 cut(s) | 1217, 4322 |
| BsrDI | GCAATG | 2 cut(s) | 1042, 3608 |
| BsrFI | RCCGGY | 1 cut(s) | 3275 |
| BsrGI | TGTACA | 2 cut(s) | 2753, 4042 |
| BssAI | RCCGGY | 1 cut(s) | 3275 |
| BssECI | CCNNGG | 7 cut(s) | 502, 503, 2250, 3013, 3503, 4312, 4371 |
| BssNAI | GTATAC | 1 cut(s) | 372 |
| BssNI | GRCGYC | 1 cut(s) | 2014 |
| BssSI | CACGAG | 1 cut(s) | 4392 |
| BssT1I | CCWWGG | 3 cut(s) | 2250, 3013, 4312 |
| Bst1107I | GTATAC | 1 cut(s) | 372 |
| Bst2BI | CACGAG | 1 cut(s) | 4392 |
| Bst2UI | CCWGG | 5 cut(s) | 504, 2148, 2183, 2802, 4372 |
| Bst4CI | ACNGT | 8 cut(s) | 1721, 2417, 2502, 2680, 3334, 3934, 4297, 4330 |
| Bst6I | CTCTTC | 3 cut(s) | 1309, 3357, 3870 |
| BstACI | GRCGYC | 1 cut(s) | 2014 |
| BstAFI | CTTAAG | 2 cut(s) | 2306, 2399 |
| BstAUI | TGTACA | 2 cut(s) | 2753, 4042 |
| BstBAI | YACGTR | 2 cut(s) | 2914, 2984 |
| BstDSI | CCRYGG | 2 cut(s) | 3503, 4312 |
| BstFNI | CGCG | 4 cut(s) | 2289, 2600, 2708, 3678 |
| BstHHI | GCGC | 3 cut(s) | 2289, 2708, 4081 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 82, 1140, 2987, 4025, 4394 |
| BstNI | CCWGG | 5 cut(s) | 504, 2148, 2183, 2802, 4372 |
| BstNSI | RCATGY | 6 cut(s) | 322, 1574, 1752, 2099, 2550, 4079 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2299 |
| BstSCI | CCNGG | 5 cut(s) | 502, 2146, 2181, 2800, 4370 |
| BstSFI | CTRYAG | 9 cut(s) | 531, 648, 2541, 2810, 3036, 3429, 3831, 4003, 4305 |
| BstSLI | GKGCMC | 1 cut(s) | 4665 |
| BstUI | CGCG | 4 cut(s) | 2289, 2600, 2708, 3678 |
| BstV2I | GAAGAC | 5 cut(s) | 281, 770, 950, 1412, 1614 |
| BstX2I | RGATCY | 7 cut(s) | 24, 325, 394, 1300, 2021, 4007, 4207 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 664, 3504 |
| BstYI | RGATCY | 7 cut(s) | 24, 325, 394, 1300, 2021, 4007, 4207 |
| BstZ17I | GTATAC | 1 cut(s) | 372 |
| Bsu15I | ATCGAT | 1 cut(s) | 3800 |
| BsuI | GTATCC | 1 cut(s) | 1897 |
| BsuTUI | ATCGAT | 1 cut(s) | 3800 |
| BtgI | CCRYGG | 2 cut(s) | 3503, 4312 |
| BtrI | CACGTC | 1 cut(s) | 1710 |
| BtsI | GCAGTG | 2 cut(s) | 3828, 4183 |
| BtsIMutI | CAGTG | 8 cut(s) | 495, 887, 1951, 2498, 2925, 3828, 4158, 4183 |
| BveI | ACCTGC | 2 cut(s) | 3029, 4312 |
| CaiI | CAGNNNCTG | 1 cut(s) | 4211 |
| CciI | TCATGA | 1 cut(s) | 3232 |
| CfoI | GCGC | 3 cut(s) | 2289, 2708, 4081 |
| Cfr10I | RCCGGY | 1 cut(s) | 3275 |
| Cfr13I | GGNCC | 6 cut(s) | 500, 644, 1040, 2294, 2473, 2804 |
| ClaI | ATCGAT | 1 cut(s) | 3800 |
| CseI | GACGC | 1 cut(s) | 2022 |
| DraIII | CACNNNGTG | 1 cut(s) | 1946 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1616 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1230 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1616 |
| EaeI | YGGCCR | 4 cut(s) | 1255, 2133, 3247, 3322 |
| Eam1104I | CTCTTC | 3 cut(s) | 1309, 3357, 3870 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1230 |
| EarI | CTCTTC | 3 cut(s) | 1309, 3357, 3870 |
| Ecl136II | GAGCTC | 5 cut(s) | 785, 3757, 4028, 4354, 4732 |
| Eco130I | CCWWGG | 3 cut(s) | 2250, 3013, 4312 |
| Eco147I | AGGCCT | 2 cut(s) | 1852, 4153 |
| Eco24I | GRGCYC | 5 cut(s) | 787, 3759, 4030, 4356, 4734 |
| Eco31I | GGTCTC | 2 cut(s) | 1217, 4322 |
| Eco32I | GATATC | 1 cut(s) | 4168 |
| Eco47I | GGWCC | 5 cut(s) | 644, 1040, 2294, 2473, 2804 |
| Eco53kI | GAGCTC | 5 cut(s) | 785, 3757, 4028, 4354, 4732 |
| EcoICRI | GAGCTC | 5 cut(s) | 785, 3757, 4028, 4354, 4732 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2294, 2473 |
| EcoRII | CCWGG | 5 cut(s) | 502, 2146, 2181, 2800, 4370 |
| EcoRV | GATATC | 1 cut(s) | 4168 |
| EcoT14I | CCWWGG | 3 cut(s) | 2250, 3013, 4312 |
| EcoT22I | ATGCAT | 3 cut(s) | 1572, 3008, 4077 |
| EcoT38I | GRGCYC | 5 cut(s) | 787, 3759, 4030, 4356, 4734 |
| ErhI | CCWWGG | 3 cut(s) | 2250, 3013, 4312 |
| Esp3I | CGTCTC | 1 cut(s) | 2002 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 273, 305 |
| FauNDI | CATATG | 3 cut(s) | 1114, 2731, 3258 |
| FbaI | TGATCA | 6 cut(s) | 2488, 2896, 2992, 3457, 4554, 4584 |
| FblI | GTMKAC | 1 cut(s) | 371 |
| FriOI | GRGCYC | 5 cut(s) | 787, 3759, 4030, 4356, 4734 |
| FspBI | CTAG | 6 cut(s) | 200, 1415, 2972, 3858, 3942, 4743 |
| GlaI | GCGC | 3 cut(s) | 2288, 2707, 4080 |
| GsuI | CTGGAG | 6 cut(s) | 771, 863, 1086, 2103, 3683, 4044 |
| HapII | CCGG | 5 cut(s) | 2336, 2355, 3276, 3338, 4493 |
| HgaI | GACGC | 1 cut(s) | 2022 |
| HhaI | GCGC | 3 cut(s) | 2289, 2708, 4081 |
| Hin1I | GRCGYC | 1 cut(s) | 2014 |
| Hin6I | GCGC | 3 cut(s) | 2287, 2706, 4079 |
| HinP1I | GCGC | 3 cut(s) | 2287, 2706, 4079 |
| HincII | GTYRAC | 4 cut(s) | 469, 2233, 3199, 4578 |
| HindII | GTYRAC | 4 cut(s) | 469, 2233, 3199, 4578 |
| HindIII | AAGCTT | 1 cut(s) | 823 |
| HpaI | GTTAAC | 1 cut(s) | 2233 |
| HpaII | CCGG | 5 cut(s) | 2336, 2355, 3276, 3338, 4493 |
| HphI | GGTGA | 8 cut(s) | 533, 557, 1016, 1616, 1841, 2614, 4175, 4309 |
| Hpy166II | GTNNAC | 9 cut(s) | 372, 469, 599, 644, 1762, 2233, 3199, 4088, 4578 |
| Hpy8I | GTNNAC | 9 cut(s) | 372, 469, 599, 644, 1762, 2233, 3199, 4088, 4578 |
| Hpy99I | CGWCG | 2 cut(s) | 1711, 2016 |
| HpyCH4III | ACNGT | 8 cut(s) | 1721, 2417, 2502, 2680, 3334, 3934, 4297, 4330 |
| HpyCH4IV | ACGT | 5 cut(s) | 123, 1709, 1773, 2913, 2983 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 82, 1140, 2987, 4025, 4394 |
| HpySE526I | ACGT | 5 cut(s) | 123, 1709, 1773, 2913, 2983 |
| Hsp92I | GRCGYC | 1 cut(s) | 2014 |
| HspAI | GCGC | 3 cut(s) | 2287, 2706, 4079 |
| Ksp22I | TGATCA | 6 cut(s) | 2488, 2896, 2992, 3457, 4554, 4584 |
| KspAI | GTTAAC | 1 cut(s) | 2233 |
| LmnI | GCTCC | 9 cut(s) | 774, 790, 1745, 3445, 3568, 4025, 4237, 4359, 4474 |
| MaeI | CTAG | 6 cut(s) | 200, 1415, 2972, 3858, 3942, 4743 |
| MaeII | ACGT | 5 cut(s) | 123, 1709, 1773, 2913, 2983 |
| MaeIII | GTNAC | 9 cut(s) | 263, 2549, 3031, 3528, 3824, 4178, 4297, 4453, 4606 |
| MfeI | CAATTG | 4 cut(s) | 1331, 1785, 2034, 4588 |
| MflI | RGATCY | 7 cut(s) | 24, 325, 394, 1300, 2021, 4007, 4207 |
| MhlI | GDGCHC | 6 cut(s) | 787, 3759, 4030, 4356, 4665, 4734 |
| MlsI | TGGCCA | 2 cut(s) | 2135, 3249 |
| MluNI | TGGCCA | 2 cut(s) | 2135, 3249 |
| MlyI | GAGTC | 4 cut(s) | 757, 2417, 3487, 3536 |
| MmeI | TCCRAC | 5 cut(s) | 1418, 2049, 2443, 3099, 4653 |
| Mox20I | TGGCCA | 2 cut(s) | 2135, 3249 |
| Mph1103I | ATGCAT | 3 cut(s) | 1572, 3008, 4077 |
| MroXI | GAANNNNTTC | 1 cut(s) | 3300 |
| MscI | TGGCCA | 2 cut(s) | 2135, 3249 |
| MslI | CAYNNNNRTG | 3 cut(s) | 456, 2940, 3414 |
| Msp20I | TGGCCA | 2 cut(s) | 2135, 3249 |
| MspA1I | CMGCKG | 4 cut(s) | 3327, 3836, 4022, 4552 |
| MspCI | CTTAAG | 2 cut(s) | 2306, 2399 |
| MspI | CCGG | 5 cut(s) | 2336, 2355, 3276, 3338, 4493 |
| MspR9I | CCNGG | 5 cut(s) | 504, 2148, 2183, 2802, 4372 |
| MunI | CAATTG | 4 cut(s) | 1331, 1785, 2034, 4588 |
| Mva1269I | GAATGC | 1 cut(s) | 1027 |
| MvaI | CCWGG | 5 cut(s) | 504, 2148, 2183, 2802, 4372 |
| MvnI | CGCG | 4 cut(s) | 2289, 2600, 2708, 3678 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 82, 1140, 2987, 4025, 4394 |
| NcoI | CCATGG | 1 cut(s) | 4312 |
| NdeI | CATATG | 3 cut(s) | 1114, 2731, 3258 |
| NheI | GCTAGC | 1 cut(s) | 4742 |
| NlaIV | GGNNCC | 8 cut(s) | 2296, 2474, 2784, 3144, 3426, 3558, 4233, 4476 |
| NmuCI | GTSAC | 6 cut(s) | 263, 3031, 3528, 4178, 4297, 4606 |
| NsiI | ATGCAT | 3 cut(s) | 1572, 3008, 4077 |
| NspI | RCATGY | 6 cut(s) | 322, 1574, 1752, 2099, 2550, 4079 |
| PaeI | GCATGC | 3 cut(s) | 1574, 2099, 4079 |
| PagI | TCATGA | 1 cut(s) | 3232 |
| PaqCI | CACCTGC | 1 cut(s) | 4312 |
| PasI | CCCWGGG | 1 cut(s) | 503 |
| PceI | AGGCCT | 2 cut(s) | 1852, 4153 |
| PciI | ACATGT | 1 cut(s) | 318 |
| PctI | GAATGC | 1 cut(s) | 1027 |
| PdmI | GAANNNNTTC | 1 cut(s) | 3300 |
| Pfl23II | CGTACG | 1 cut(s) | 2984 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2068 |
| PfoI | TCCNGGA | 1 cut(s) | 2800 |
| PleI | GAGTC | 4 cut(s) | 756, 2416, 3487, 3535 |
| PpsI | GAGTC | 4 cut(s) | 756, 2416, 3487, 3535 |
| Ppu21I | YACGTR | 2 cut(s) | 2914, 2984 |
| PpuMI | RGGWCCY | 2 cut(s) | 2294, 2473 |
| PscI | ACATGT | 1 cut(s) | 318 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2299 |
| PsiI | TTATAA | 1 cut(s) | 1503 |
| Psp124BI | GAGCTC | 5 cut(s) | 787, 3759, 4030, 4356, 4734 |
| Psp1406I | AACGTT | 1 cut(s) | 1773 |
| Psp5II | RGGWCCY | 2 cut(s) | 2294, 2473 |
| Psp6I | CCWGG | 5 cut(s) | 502, 2146, 2181, 2800, 4370 |
| PspGI | CCWGG | 5 cut(s) | 502, 2146, 2181, 2800, 4370 |
| PspLI | CGTACG | 1 cut(s) | 2984 |
| PspN4I | GGNNCC | 8 cut(s) | 2296, 2474, 2784, 3144, 3426, 3558, 4233, 4476 |
| PspPI | GGNCC | 6 cut(s) | 500, 644, 1040, 2294, 2473, 2804 |
| PspPPI | RGGWCCY | 2 cut(s) | 2294, 2473 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 3672, 3704, 4080, 4112 |
| PstI | CTGCAG | 3 cut(s) | 3040, 3835, 4309 |
| PstNI | CAGNNNCTG | 1 cut(s) | 4211 |
| PsuI | RGATCY | 7 cut(s) | 24, 325, 394, 1300, 2021, 4007, 4207 |
| PvuII | CAGCTG | 3 cut(s) | 3836, 4022, 4552 |
| RseI | CAYNNNNRTG | 3 cut(s) | 456, 2940, 3414 |
| SacI | GAGCTC | 5 cut(s) | 787, 3759, 4030, 4356, 4734 |
| Sau96I | GGNCC | 6 cut(s) | 500, 644, 1040, 2294, 2473, 2804 |
| SbfI | CCTGCAGG | 1 cut(s) | 4309 |
| SchI | GAGTC | 4 cut(s) | 757, 2417, 3487, 3536 |
| ScrFI | CCNGG | 5 cut(s) | 504, 2148, 2183, 2802, 4372 |
| SdaI | CCTGCAGG | 1 cut(s) | 4309 |
| SduI | GDGCHC | 6 cut(s) | 787, 3759, 4030, 4356, 4665, 4734 |
| SfcI | CTRYAG | 9 cut(s) | 531, 648, 2541, 2810, 3036, 3429, 3831, 4003, 4305 |
| SinI | GGWCC | 5 cut(s) | 644, 1040, 2294, 2473, 2804 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 456, 2940, 3414 |
| SmlI | CTYRAG | 7 cut(s) | 1304, 1469, 2100, 2306, 2399, 4031, 4752 |
| SmoI | CTYRAG | 7 cut(s) | 1304, 1469, 2100, 2306, 2399, 4031, 4752 |
| SpeI | ACTAGT | 1 cut(s) | 3941 |
| SphI | GCATGC | 3 cut(s) | 1574, 2099, 4079 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 4309 |
| SseBI | AGGCCT | 2 cut(s) | 1852, 4153 |
| SsiI | CCGC | 6 cut(s) | 127, 157, 1258, 2600, 3325, 3676 |
| SspMI | CTAG | 6 cut(s) | 200, 1415, 2972, 3858, 3942, 4743 |
| SstI | GAGCTC | 5 cut(s) | 787, 3759, 4030, 4356, 4734 |
| StuI | AGGCCT | 2 cut(s) | 1852, 4153 |
| StyD4I | CCNGG | 5 cut(s) | 502, 2146, 2181, 2800, 4370 |
| StyI | CCWWGG | 3 cut(s) | 2250, 3013, 4312 |
| TaaI | ACNGT | 8 cut(s) | 1721, 2417, 2502, 2680, 3334, 3934, 4297, 4330 |
| TaiI | ACGT | 5 cut(s) | 126, 1712, 1776, 2916, 2986 |
| TaqI | TCGA | 7 cut(s) | 1403, 1837, 2968, 3304, 3800, 4120, 4520 |
| TaqII | GACCGA | 1 cut(s) | 741 |
| TatI | WGTACW | 5 cut(s) | 2193, 2753, 3329, 3848, 4042 |
| TauI | GCSGC | 2 cut(s) | 1260, 3327 |
| TscAI | CASTG | 8 cut(s) | 502, 887, 1951, 2505, 2932, 3835, 4165, 4183 |
| TseFI | GTSAC | 6 cut(s) | 263, 3031, 3528, 4178, 4297, 4606 |
| Tsp45I | GTSAC | 6 cut(s) | 263, 3031, 3528, 4178, 4297, 4606 |
| TspGWI | ACGGA | 6 cut(s) | 41, 528, 594, 834, 1619, 3492 |
| TspRI | CASTG | 8 cut(s) | 502, 887, 1951, 2505, 2932, 3835, 4165, 4183 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2068 |
| Vha464I | CTTAAG | 2 cut(s) | 2306, 2399 |
| VpaK11BI | GGWCC | 5 cut(s) | 644, 1040, 2294, 2473, 2804 |
| XbaI | TCTAGA | 2 cut(s) | 199, 3857 |
| XceI | RCATGY | 6 cut(s) | 322, 1574, 1752, 2099, 2550, 4079 |
| XmiI | GTMKAC | 1 cut(s) | 371 |
| XmnI | GAANNNNTTC | 1 cut(s) | 3300 |
| XspI | CTAG | 6 cut(s) | 200, 1415, 2972, 3858, 3942, 4743 |
| Zsp2I | ATGCAT | 3 cut(s) | 1572, 3008, 4077 |