Rh2DG318300

2-dehydro-3-deoxyphosphooctonate aldolase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
39558302 .. 39567029
8728 bp
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UTR
Exon/CDS
Intron
Rh2DG318300.1

Sequence Viewer

Length: 231 bp
ATGAAAGAGATTGTCAAGTCCCTAGCTAGAAGTTTCGGGGAAGCTGACGTTTCCAATCTCCTTGAAGCAGGTCCACCAGTACATGATGATCCTTCTAATGCGCCAGTTGATGGTCCGACCCAATGGCCGTTGCGCCATTTGGAGGAACTACTGGTAGAGCTTATTGCAATTTCTAGGGTAAGCAAGGGGAAGCAACGCTTCAACATTGATCTCTCACCCTATCGTGATTAG

Protein Analysis

76

Amino Acids

8.46

Weight (kDa)

5.25

Isoelectric Point (pI)

46.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 59
AccB7I CCANNNNNTGG 1 cut(s) 110
AclWI GGATC 1 cut(s) 83
AcoI YGGCCR 1 cut(s) 125
AfaI GTAC 1 cut(s) 81
AfiI CCNNNNNNNGG 2 cut(s) 110, 142
AgsI TTSAA 2 cut(s) 65, 202
AluBI AGCT 3 cut(s) 26, 44, 160
AluI AGCT 3 cut(s) 26, 44, 160
AlwI GGATC 1 cut(s) 83
AoxI GGCC 1 cut(s) 125
AspLEI GCGC 2 cut(s) 103, 135
AspS9I GGNCC 2 cut(s) 71, 113
AsuHPI GGTGA 1 cut(s) 207
AvaII GGWCC 2 cut(s) 71, 113
BccI CCATC 1 cut(s) 104
BceAI ACGGC 1 cut(s) 112
BfaI CTAG 3 cut(s) 23, 27, 174
BfuAI ACCTGC 1 cut(s) 59
Bme18I GGWCC 2 cut(s) 71, 113
BmgT120I GGNCC 2 cut(s) 71, 113
Bsc4I CCNNNNNNNGG 2 cut(s) 110, 142
Bse1I ACTGG 3 cut(s) 77, 104, 156
BseLI CCNNNNNNNGG 2 cut(s) 110, 142
BseNI ACTGG 3 cut(s) 77, 104, 156
BshFI GGCC 1 cut(s) 127
BslFI GGGAC 1 cut(s) 4
BslI CCNNNNNNNGG 2 cut(s) 110, 142
BsmFI GGGAC 1 cut(s) 4
BsnI GGCC 1 cut(s) 127
Bsp143I GATC 2 cut(s) 88, 208
BspANI GGCC 1 cut(s) 127
BspMI ACCTGC 1 cut(s) 59
BspPI GGATC 1 cut(s) 83
BsrI ACTGG 3 cut(s) 77, 104, 156
BssMI GATC 2 cut(s) 88, 208
BstHHI GCGC 2 cut(s) 103, 135
BstKTI GATC 2 cut(s) 91, 211
BstMBI GATC 2 cut(s) 88, 208
BsuRI GGCC 1 cut(s) 127
BveI ACCTGC 1 cut(s) 59
CfoI GCGC 2 cut(s) 103, 135
Cfr13I GGNCC 2 cut(s) 71, 113
Csp6I GTAC 1 cut(s) 80
CviAII CATG 1 cut(s) 83
CviJI RGCY 4 cut(s) 26, 44, 127, 160
CviKI_1 RGCY 4 cut(s) 26, 44, 127, 160
CviQI GTAC 1 cut(s) 80
DpnI GATC 2 cut(s) 90, 210
DpnII GATC 2 cut(s) 88, 208
EaeI YGGCCR 1 cut(s) 125
Eco47I GGWCC 2 cut(s) 71, 113
FaeI CATG 1 cut(s) 86
FaiI YATR 1 cut(s) 84
FalI AAGNNNNNCTT 2 cut(s) 182, 214
FaqI GGGAC 1 cut(s) 4
FatI CATG 1 cut(s) 82
FspBI CTAG 3 cut(s) 23, 27, 174
GlaI GCGC 2 cut(s) 102, 134
HaeIII GGCC 1 cut(s) 127
HhaI GCGC 2 cut(s) 103, 135
Hin1II CATG 1 cut(s) 86
Hin6I GCGC 2 cut(s) 101, 133
HinP1I GCGC 2 cut(s) 101, 133
HphI GGTGA 1 cut(s) 207
Hpy166II GTNNAC 1 cut(s) 74
Hpy188I TCNGA 1 cut(s) 117
Hpy188III TCNNGA 1 cut(s) 224
Hpy8I GTNNAC 1 cut(s) 74
HpyAV CCTTC 1 cut(s) 102
HpyCH4IV ACGT 1 cut(s) 48
HpyCH4V TGCA 1 cut(s) 167
HpySE526I ACGT 1 cut(s) 48
Hsp92II CATG 1 cut(s) 86
HspAI GCGC 2 cut(s) 101, 133
Kzo9I GATC 2 cut(s) 88, 208
LpnPI CCDG 4 cut(s) 54, 90, 117, 137
MaeI CTAG 3 cut(s) 23, 27, 174
MaeII ACGT 1 cut(s) 48
MalI GATC 2 cut(s) 90, 210
MboI GATC 2 cut(s) 88, 208
MluCI AATT 1 cut(s) 168
MmeI TCCRAC 1 cut(s) 140
MnlI CCTC 1 cut(s) 136
NdeII GATC 2 cut(s) 88, 208
NlaIII CATG 1 cut(s) 86
PflMI CCANNNNNTGG 1 cut(s) 110
PspPI GGNCC 2 cut(s) 71, 113
RsaI GTAC 1 cut(s) 81
RsaNI GTAC 1 cut(s) 80
Sau3AI GATC 2 cut(s) 88, 208
Sau96I GGNCC 2 cut(s) 71, 113
SetI ASST 5 cut(s) 28, 46, 51, 73, 162
SinI GGWCC 2 cut(s) 71, 113
Sse9I AATT 1 cut(s) 168
SspMI CTAG 3 cut(s) 23, 27, 174
TaiI ACGT 1 cut(s) 51
TasI AATT 1 cut(s) 168
TatI WGTACW 1 cut(s) 79
TspDTI ATGAA 1 cut(s) 17
Van91I CCANNNNNTGG 1 cut(s) 110
VpaK11BI GGWCC 2 cut(s) 71, 113
XspI CTAG 3 cut(s) 23, 27, 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.