Rh6CG203700

gamma-irradiation and mitomycin c induced

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001133
Physical Location & Seq
Reverse (-)
34067054 .. 34068236
1183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG203700.1

Sequence Viewer

Length: 408 bp
ATGCGTTGCCACGCTGATCATCATGGATGCATTGACCTTGGTGGCCTCTTCAAACTGACTGCAGGTTATGAGAAAAGTGTATCAATTTCTGTCTACTCCAACAATGATGTTTTACTGAATCTTCAGTCTCAAACTGAGAAAAGGGTGTTGATAATTTCATCAAAGGTGCCTGACGTTTGCGTGGCTGGTACTCAAATGGAAAATATGGTTTTTGAAATTGTCAGCTCTGATGGTGTTGTTGATGATACTATTCATCATGACGAGAAAAGTGGCCAATTACATATAGCTACAATAATGGCCGGTTCATCATCCATGGAGGAATCCCTTCGATACACATTCAAGCATGGACGCTGTACAATACCAAGACCCCCACACCCTACCTCGAAGAGTAGGGACTTATTATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HATPase_c_3

Protein Analysis

135

Amino Acids

14.93

Weight (kDa)

6.21

Isoelectric Point (pI)

35.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 53
AccB1I GGYRCC 1 cut(s) 166
AccI GTMKAC 1 cut(s) 93
AcoI YGGCCR 2 cut(s) 271, 297
AcuI CTGAAG 1 cut(s) 107
AfaI GTAC 2 cut(s) 190, 355
AgsI TTSAA 3 cut(s) 52, 215, 340
AluBI AGCT 2 cut(s) 225, 287
AluI AGCT 2 cut(s) 225, 287
Alw26I GTCTC 1 cut(s) 132
AoxI GGCC 3 cut(s) 43, 271, 297
Asp700I GAANNNNTTC 1 cut(s) 324
BalI TGGCCA 1 cut(s) 273
BanI GGYRCC 1 cut(s) 166
BccI CCATC 1 cut(s) 224
BclI TGATCA 1 cut(s) 16
BcoDI GTCTC 1 cut(s) 132
BfmI CTRYAG 1 cut(s) 60
BfuAI ACCTGC 1 cut(s) 53
BmiI GGNNCC 1 cut(s) 168
BmsI GCATC 1 cut(s) 17
BsaJI CCNNGG 2 cut(s) 37, 312
Bse118I RCCGGY 1 cut(s) 299
BseDI CCNNGG 2 cut(s) 37, 312
BseGI GGATG 2 cut(s) 32, 308
BseMII CTCAG 1 cut(s) 126
BshFI GGCC 3 cut(s) 45, 273, 299
BshNI GGYRCC 1 cut(s) 166
BsiSI CCGG 1 cut(s) 300
BsmAI GTCTC 1 cut(s) 132
BsnI GGCC 3 cut(s) 45, 273, 299
Bsp1407I TGTACA 1 cut(s) 353
Bsp143I GATC 1 cut(s) 16
Bsp19I CCATGG 1 cut(s) 312
BspANI GGCC 3 cut(s) 45, 273, 299
BspCNI CTCAG 1 cut(s) 127
BspHI TCATGA 1 cut(s) 256
BspLI GGNNCC 1 cut(s) 168
BspMAI CTGCAG 1 cut(s) 64
BspMI ACCTGC 1 cut(s) 53
BspT107I GGYRCC 1 cut(s) 166
BsrFI RCCGGY 1 cut(s) 299
BsrGI TGTACA 1 cut(s) 353
BssAI RCCGGY 1 cut(s) 299
BssECI CCNNGG 2 cut(s) 37, 312
BssMI GATC 1 cut(s) 16
BssT1I CCWWGG 2 cut(s) 37, 312
Bst6I CTCTTC 2 cut(s) 53, 380
BstAUI TGTACA 1 cut(s) 353
BstDEI CTNAG 1 cut(s) 135
BstDSI CCRYGG 1 cut(s) 312
BstF5I GGATG 2 cut(s) 32, 308
BstKTI GATC 1 cut(s) 19
BstMAI GTCTC 1 cut(s) 132
BstMBI GATC 1 cut(s) 16
BstSFI CTRYAG 1 cut(s) 60
BsuRI GGCC 3 cut(s) 45, 273, 299
BtgI CCRYGG 1 cut(s) 312
BtsCI GGATG 2 cut(s) 32, 308
BveI ACCTGC 1 cut(s) 53
CciI TCATGA 1 cut(s) 256
Cfr10I RCCGGY 1 cut(s) 299
CseI GACGC 1 cut(s) 357
Csp6I GTAC 2 cut(s) 189, 354
CviAII CATG 4 cut(s) 23, 257, 313, 344
CviJI RGCY 6 cut(s) 45, 185, 225, 273, 287, 299
CviKI_1 RGCY 6 cut(s) 45, 185, 225, 273, 287, 299
CviQI GTAC 2 cut(s) 189, 354
DdeI CTNAG 1 cut(s) 135
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
EaeI YGGCCR 2 cut(s) 271, 297
Eam1104I CTCTTC 2 cut(s) 53, 380
EarI CTCTTC 2 cut(s) 53, 380
Eco130I CCWWGG 2 cut(s) 37, 312
Eco57I CTGAAG 1 cut(s) 107
EcoT14I CCWWGG 2 cut(s) 37, 312
EcoT22I ATGCAT 1 cut(s) 32
ErhI CCWWGG 2 cut(s) 37, 312
FaeI CATG 4 cut(s) 26, 260, 316, 347
FaiI YATR 9 cut(s) 24, 69, 206, 258, 282, 284, 314, 345, 403
FatI CATG 4 cut(s) 22, 256, 312, 343
FbaI TGATCA 1 cut(s) 16
FblI GTMKAC 1 cut(s) 93
FokI GGATG 2 cut(s) 39, 295
HaeIII GGCC 3 cut(s) 45, 273, 299
HapII CCGG 1 cut(s) 300
HgaI GACGC 1 cut(s) 357
Hin1II CATG 4 cut(s) 26, 260, 316, 347
HinfI GANTC 2 cut(s) 118, 320
HpaII CCGG 1 cut(s) 300
Hpy166II GTNNAC 1 cut(s) 94
Hpy188I TCNGA 1 cut(s) 229
Hpy188III TCNNGA 1 cut(s) 257
Hpy8I GTNNAC 1 cut(s) 94
HpyAV CCTTC 1 cut(s) 335
HpyCH4IV ACGT 1 cut(s) 174
HpyCH4V TGCA 2 cut(s) 30, 62
HpyF3I CTNAG 1 cut(s) 135
HpySE526I ACGT 1 cut(s) 174
Hsp92II CATG 4 cut(s) 26, 260, 316, 347
Ksp22I TGATCA 1 cut(s) 16
Kzo9I GATC 1 cut(s) 16
LpnPI CCDG 4 cut(s) 48, 171, 183, 313
LweI GCATC 1 cut(s) 17
MaeII ACGT 1 cut(s) 174
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MboII GAAGA 3 cut(s) 40, 113, 397
MlsI TGGCCA 1 cut(s) 273
MluCI AATT 4 cut(s) 84, 153, 216, 275
MluNI TGGCCA 1 cut(s) 273
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 3 cut(s) 56, 310, 391
Mox20I TGGCCA 1 cut(s) 273
Mph1103I ATGCAT 1 cut(s) 32
MroXI GAANNNNTTC 1 cut(s) 324
MscI TGGCCA 1 cut(s) 273
MseI TTAA 1 cut(s) 406
Msp20I TGGCCA 1 cut(s) 273
MspI CCGG 1 cut(s) 300
NcoI CCATGG 1 cut(s) 312
NdeII GATC 1 cut(s) 16
NlaIII CATG 4 cut(s) 26, 260, 316, 347
NlaIV GGNNCC 1 cut(s) 168
NsiI ATGCAT 1 cut(s) 32
PagI TCATGA 1 cut(s) 256
PdmI GAANNNNTTC 1 cut(s) 324
PfeI GAWTC 2 cut(s) 118, 320
PspN4I GGNNCC 1 cut(s) 168
PstI CTGCAG 1 cut(s) 64
RsaI GTAC 2 cut(s) 190, 355
RsaNI GTAC 2 cut(s) 189, 354
SaqAI TTAA 1 cut(s) 406
Sau3AI GATC 1 cut(s) 16
SetI ASST 7 cut(s) 39, 67, 168, 177, 227, 289, 383
SfaNI GCATC 1 cut(s) 17
SfcI CTRYAG 1 cut(s) 60
Sse9I AATT 4 cut(s) 84, 153, 216, 275
StyI CCWWGG 2 cut(s) 37, 312
TaiI ACGT 1 cut(s) 177
TaqI TCGA 2 cut(s) 328, 383
TasI AATT 4 cut(s) 84, 153, 216, 275
TatI WGTACW 1 cut(s) 353
TfiI GAWTC 2 cut(s) 118, 320
Tru1I TTAA 1 cut(s) 406
Tru9I TTAA 1 cut(s) 406
TspDTI ATGAA 3 cut(s) 147, 242, 294
XmiI GTMKAC 1 cut(s) 93
XmnI GAANNNNTTC 1 cut(s) 324
Zsp2I ATGCAT 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.