zinc finger
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G24930 |
| fragaria_vesca | FvH4_2g41420 FvH4_2g41420 |
| malus_domestica | MD08G1049600.v1.1 MD15G1045000.v1.1 |
| prunus_persica | Prupe.1G019200_v2.0.a1 Prupe.1G398700_v2.0.a1 Prupe.1G398700_v2.0.a1 |
| pyrus_communis | pycom01g05670 pycom08g04150 pycom15g04180 |
| rosa_chinensis | RchiOBHm_Chr3g0493071 RchiOBHm_Chr4g0429731 RchiOBHm_Chr4g0429741 RchiOBHm_Chr5g0033381 RchiOBHm_Chr5g0037591 RchiOBHm_Chr5g0068911 RchiOBHm_Chr5g0068921 RchiOBHm_Chr6g0299051 |
| rosa_laevigata | RLG00000011466 RLG00000027505 RLG00000031917 RLG00000032258 |
| rosa_multiflora | Rmu_co8169200.1_g000001 Rmu_co8181194.1_g000001 Rmu_sc0000981.1_g000006 |
| rosa_roxburghii | Rroxscaffold_7G00169050 |
| rosa_rugosa | Rorug06G0219600 Rorug06G0284400 |
| rosa_samantha | Rh3AG308000 Rh3CG322500 Rh3DG321400 Rh5AG231500 Rh5AG254900 Rh6AG395900 Rh6BG404500 Rh6CG410500 Rh6DG397100 |
| rosa_wichuraiana | Rw4G030090 Rw6G034650 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 775 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 785 |
| AccII | CGCG | 8 cut(s) | 104, 119, 131, 133, 135, 194, 200, 264 |
| AccIII | TCCGGA | 2 cut(s) | 496, 535 |
| AclWI | GGATC | 9 cut(s) | 461, 527, 533, 540, 546, 558, 566, 703, 836 |
| AcoI | YGGCCR | 1 cut(s) | 195 |
| AcuI | CTGAAG | 2 cut(s) | 453, 858 |
| AcvI | CACGTG | 2 cut(s) | 180, 213 |
| AcyI | GRCGYC | 1 cut(s) | 5 |
| AdeI | CACNNNGTG | 1 cut(s) | 745 |
| AfaI | GTAC | 3 cut(s) | 610, 905, 1077 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 785, 818 |
| AflII | CTTAAG | 1 cut(s) | 79 |
| AflIII | ACRYGT | 2 cut(s) | 172, 262 |
| AgsI | TTSAA | 3 cut(s) | 93, 677, 957 |
| AjiI | CACGTC | 1 cut(s) | 175 |
| AluBI | AGCT | 8 cut(s) | 13, 84, 248, 398, 473, 603, 839, 878 |
| AluI | AGCT | 8 cut(s) | 13, 84, 248, 398, 473, 603, 839, 878 |
| Alw26I | GTCTC | 2 cut(s) | 298, 973 |
| AlwI | GGATC | 9 cut(s) | 461, 527, 533, 540, 546, 558, 566, 703, 836 |
| Aor13HI | TCCGGA | 2 cut(s) | 496, 535 |
| AoxI | GGCC | 1 cut(s) | 195 |
| ApeKI | GCWGC | 3 cut(s) | 65, 84, 398 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 264 |
| AspLEI | GCGC | 2 cut(s) | 133, 135 |
| AspS9I | GGNCC | 1 cut(s) | 821 |
| AsuC2I | CCSGG | 2 cut(s) | 486, 846 |
| AsuHPI | GGTGA | 1 cut(s) | 670 |
| AvaII | GGWCC | 1 cut(s) | 821 |
| BamHI | GGATCC | 2 cut(s) | 532, 538 |
| BanI | GGYRCC | 1 cut(s) | 775 |
| BbrPI | CACGTG | 2 cut(s) | 180, 213 |
| BbsI | GAAGAC | 1 cut(s) | 944 |
| BbvCI | CCTCAGC | 1 cut(s) | 474 |
| BbvI | GCAGC | 3 cut(s) | 71, 77, 385 |
| BccI | CCATC | 4 cut(s) | 356, 608, 754, 776 |
| BceAI | ACGGC | 6 cut(s) | 54, 237, 308, 360, 456, 462 |
| BciVI | GTATCC | 2 cut(s) | 819, 1009 |
| BcnI | CCSGG | 2 cut(s) | 486, 846 |
| BcoDI | GTCTC | 2 cut(s) | 298, 973 |
| BfaI | CTAG | 1 cut(s) | 297 |
| BfrI | CTTAAG | 1 cut(s) | 79 |
| BfuI | GTATCC | 2 cut(s) | 819, 1009 |
| BisI | GCNGC | 7 cut(s) | 42, 66, 85, 105, 195, 198, 399 |
| BlsI | GCNGC | 7 cut(s) | 43, 67, 86, 106, 196, 199, 400 |
| Bme1390I | CCNGG | 2 cut(s) | 486, 846 |
| Bme18I | GGWCC | 1 cut(s) | 821 |
| BmgBI | CACGTC | 1 cut(s) | 175 |
| BmgT120I | GGNCC | 1 cut(s) | 821 |
| BmiI | GGNNCC | 4 cut(s) | 307, 534, 540, 777 |
| BmrFI | CCNGG | 2 cut(s) | 486, 846 |
| BmsI | GCATC | 1 cut(s) | 741 |
| BpiI | GAAGAC | 1 cut(s) | 944 |
| Bpu10I | CCTNAGC | 1 cut(s) | 474 |
| BpuMI | CCSGG | 2 cut(s) | 486, 846 |
| BsaAI | YACGTR | 2 cut(s) | 180, 213 |
| BsaBI | GATNNNNATC | 2 cut(s) | 537, 543 |
| BsaHI | GRCGYC | 1 cut(s) | 5 |
| BsaI | GGTCTC | 1 cut(s) | 973 |
| BsaJI | CCNNGG | 1 cut(s) | 845 |
| BsaWI | WCCGGW | 5 cut(s) | 496, 535, 605, 625, 689 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 785, 818 |
| Bse118I | RCCGGY | 1 cut(s) | 166 |
| Bse1I | ACTGG | 2 cut(s) | 514, 831 |
| Bse3DI | GCAATG | 1 cut(s) | 1036 |
| Bse8I | GATNNNNATC | 2 cut(s) | 537, 543 |
| BseAI | TCCGGA | 2 cut(s) | 496, 535 |
| BseDI | CCNNGG | 1 cut(s) | 845 |
| BseGI | GGATG | 1 cut(s) | 147 |
| BseJI | GATNNNNATC | 2 cut(s) | 537, 543 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 785, 818 |
| BseMI | GCAATG | 1 cut(s) | 1036 |
| BseMII | CTCAG | 2 cut(s) | 465, 870 |
| BseNI | ACTGG | 2 cut(s) | 514, 831 |
| BsePI | GCGCGC | 1 cut(s) | 131 |
| BseRI | GAGGAG | 1 cut(s) | 401 |
| BseX3I | CGGCCG | 1 cut(s) | 195 |
| BseXI | GCAGC | 3 cut(s) | 71, 77, 385 |
| Bsh1236I | CGCG | 8 cut(s) | 104, 119, 131, 133, 135, 194, 200, 264 |
| Bsh1285I | CGRYCG | 2 cut(s) | 198, 220 |
| BshFI | GGCC | 1 cut(s) | 197 |
| BshNI | GGYRCC | 1 cut(s) | 775 |
| BsiEI | CGRYCG | 2 cut(s) | 198, 220 |
| BsiSI | CCGG | 8 cut(s) | 167, 485, 497, 536, 606, 626, 690, 845 |
| BslFI | GGGAC | 2 cut(s) | 862, 1008 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 785, 818 |
| BsmAI | GTCTC | 2 cut(s) | 298, 973 |
| BsmBI | CGTCTC | 1 cut(s) | 298 |
| BsmFI | GGGAC | 2 cut(s) | 862, 1008 |
| BsnI | GGCC | 1 cut(s) | 197 |
| Bso31I | GGTCTC | 1 cut(s) | 973 |
| Bsp13I | TCCGGA | 2 cut(s) | 496, 535 |
| Bsp143I | GATC | 7 cut(s) | 453, 532, 538, 550, 571, 695, 841 |
| BspANI | GGCC | 1 cut(s) | 197 |
| BspCNI | CTCAG | 2 cut(s) | 466, 871 |
| BspEI | TCCGGA | 2 cut(s) | 496, 535 |
| BspFNI | CGCG | 8 cut(s) | 104, 119, 131, 133, 135, 194, 200, 264 |
| BspLI | GGNNCC | 4 cut(s) | 307, 534, 540, 777 |
| BspPI | GGATC | 9 cut(s) | 461, 527, 533, 540, 546, 558, 566, 703, 836 |
| BspT107I | GGYRCC | 1 cut(s) | 775 |
| BspTI | CTTAAG | 1 cut(s) | 79 |
| BspTNI | GGTCTC | 1 cut(s) | 973 |
| BsrDI | GCAATG | 1 cut(s) | 1036 |
| BsrFI | RCCGGY | 1 cut(s) | 166 |
| BsrI | ACTGG | 2 cut(s) | 514, 831 |
| BssAI | RCCGGY | 1 cut(s) | 166 |
| BssECI | CCNNGG | 1 cut(s) | 845 |
| BssHII | GCGCGC | 1 cut(s) | 131 |
| BssMI | GATC | 7 cut(s) | 453, 532, 538, 550, 571, 695, 841 |
| BssNI | GRCGYC | 1 cut(s) | 5 |
| Bst4CI | ACNGT | 8 cut(s) | 221, 305, 344, 519, 643, 658, 818, 999 |
| Bst6I | CTCTTC | 2 cut(s) | 378, 908 |
| BstACI | GRCGYC | 1 cut(s) | 5 |
| BstAFI | CTTAAG | 1 cut(s) | 79 |
| BstBAI | YACGTR | 2 cut(s) | 180, 213 |
| BstC8I | GCNNGC | 5 cut(s) | 133, 158, 162, 250, 858 |
| BstDEI | CTNAG | 2 cut(s) | 474, 879 |
| BstF5I | GGATG | 1 cut(s) | 147 |
| BstFNI | CGCG | 8 cut(s) | 104, 119, 131, 133, 135, 194, 200, 264 |
| BstHHI | GCGC | 2 cut(s) | 133, 135 |
| BstKTI | GATC | 7 cut(s) | 456, 535, 541, 553, 574, 698, 844 |
| BstMAI | GTCTC | 2 cut(s) | 298, 973 |
| BstMBI | GATC | 7 cut(s) | 453, 532, 538, 550, 571, 695, 841 |
| BstMCI | CGRYCG | 2 cut(s) | 198, 220 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 24, 41, 84, 194, 213 |
| BstSCI | CCNGG | 2 cut(s) | 484, 844 |
| BstUI | CGCG | 8 cut(s) | 104, 119, 131, 133, 135, 194, 200, 264 |
| BstV1I | GCAGC | 3 cut(s) | 71, 77, 385 |
| BstV2I | GAAGAC | 1 cut(s) | 944 |
| BstX2I | RGATCY | 4 cut(s) | 532, 538, 550, 695 |
| BstYI | RGATCY | 4 cut(s) | 532, 538, 550, 695 |
| BstZI | CGGCCG | 1 cut(s) | 195 |
| BsuI | GTATCC | 2 cut(s) | 819, 1009 |
| BsuRI | GGCC | 1 cut(s) | 197 |
| BtrI | CACGTC | 1 cut(s) | 175 |
| BtsCI | GGATG | 1 cut(s) | 147 |
| BtsIMutI | CAGTG | 2 cut(s) | 507, 838 |
| Cac8I | GCNNGC | 5 cut(s) | 133, 158, 162, 250, 858 |
| CciNI | GCGGCCGC | 1 cut(s) | 195 |
| CfoI | GCGC | 2 cut(s) | 133, 135 |
| Cfr10I | RCCGGY | 1 cut(s) | 166 |
| Cfr13I | GGNCC | 1 cut(s) | 821 |
| CseI | GACGC | 4 cut(s) | 71, 108, 196, 200 |
| Csp6I | GTAC | 3 cut(s) | 609, 904, 1076 |
| CviAII | CATG | 1 cut(s) | 1046 |
| CviQI | GTAC | 3 cut(s) | 609, 904, 1076 |
| DdeI | CTNAG | 2 cut(s) | 474, 879 |
| DpnI | GATC | 7 cut(s) | 455, 534, 540, 552, 573, 697, 843 |
| DpnII | GATC | 7 cut(s) | 453, 532, 538, 550, 571, 695, 841 |
| DraIII | CACNNNGTG | 1 cut(s) | 745 |
| EaeI | YGGCCR | 1 cut(s) | 195 |
| EagI | CGGCCG | 1 cut(s) | 195 |
| Eam1104I | CTCTTC | 2 cut(s) | 378, 908 |
| EarI | CTCTTC | 2 cut(s) | 378, 908 |
| EclXI | CGGCCG | 1 cut(s) | 195 |
| Eco31I | GGTCTC | 1 cut(s) | 973 |
| Eco32I | GATATC | 1 cut(s) | 226 |
| Eco47I | GGWCC | 1 cut(s) | 821 |
| Eco52I | CGGCCG | 1 cut(s) | 195 |
| Eco57I | CTGAAG | 2 cut(s) | 453, 858 |
| Eco72I | CACGTG | 2 cut(s) | 180, 213 |
| EcoRV | GATATC | 1 cut(s) | 226 |
| Esp3I | CGTCTC | 1 cut(s) | 298 |
| FaeI | CATG | 1 cut(s) | 1049 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 937, 969 |
| FaqI | GGGAC | 2 cut(s) | 862, 1008 |
| FatI | CATG | 1 cut(s) | 1045 |
| FauI | CCCGC | 2 cut(s) | 442, 849 |
| Fnu4HI | GCNGC | 7 cut(s) | 42, 66, 85, 105, 195, 198, 399 |
| FokI | GGATG | 1 cut(s) | 154 |
| Fsp4HI | GCNGC | 7 cut(s) | 42, 66, 85, 105, 195, 198, 399 |
| FspBI | CTAG | 1 cut(s) | 297 |
| GlaI | GCGC | 2 cut(s) | 132, 134 |
| GluI | GCNGC | 7 cut(s) | 42, 66, 85, 105, 195, 198, 399 |
| HaeIII | GGCC | 1 cut(s) | 197 |
| HapII | CCGG | 8 cut(s) | 167, 485, 497, 536, 606, 626, 690, 845 |
| HgaI | GACGC | 4 cut(s) | 71, 108, 196, 200 |
| HhaI | GCGC | 2 cut(s) | 133, 135 |
| Hin1I | GRCGYC | 1 cut(s) | 5 |
| Hin1II | CATG | 1 cut(s) | 1049 |
| Hin6I | GCGC | 2 cut(s) | 131, 133 |
| HinP1I | GCGC | 2 cut(s) | 131, 133 |
| HincII | GTYRAC | 1 cut(s) | 515 |
| HindII | GTYRAC | 1 cut(s) | 515 |
| HinfI | GANTC | 7 cut(s) | 20, 89, 287, 584, 634, 649, 987 |
| HpaII | CCGG | 8 cut(s) | 167, 485, 497, 536, 606, 626, 690, 845 |
| HphI | GGTGA | 1 cut(s) | 670 |
| Hpy166II | GTNNAC | 3 cut(s) | 100, 515, 661 |
| Hpy188I | TCNGA | 6 cut(s) | 355, 532, 576, 639, 654, 1070 |
| Hpy188III | TCNNGA | 6 cut(s) | 123, 257, 497, 536, 548, 554 |
| Hpy8I | GTNNAC | 3 cut(s) | 100, 515, 661 |
| Hpy99I | CGWCG | 5 cut(s) | 40, 442, 448, 658, 760 |
| HpyAV | CCTTC | 1 cut(s) | 571 |
| HpyCH4III | ACNGT | 8 cut(s) | 221, 305, 344, 519, 643, 658, 818, 999 |
| HpyCH4IV | ACGT | 3 cut(s) | 174, 179, 212 |
| HpyCH4V | TGCA | 4 cut(s) | 27, 183, 732, 827 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 24, 41, 84, 194, 213 |
| HpyF3I | CTNAG | 2 cut(s) | 474, 879 |
| HpySE526I | ACGT | 3 cut(s) | 174, 179, 212 |
| Hsp92I | GRCGYC | 1 cut(s) | 5 |
| Hsp92II | CATG | 1 cut(s) | 1049 |
| HspAI | GCGC | 2 cut(s) | 131, 133 |
| Kpn2I | TCCGGA | 2 cut(s) | 496, 535 |
| Kzo9I | GATC | 7 cut(s) | 453, 532, 538, 550, 571, 695, 841 |
| LmnI | GCTCC | 2 cut(s) | 608, 836 |
| Lsp1109I | GCAGC | 3 cut(s) | 71, 77, 385 |
| LweI | GCATC | 1 cut(s) | 741 |
| MaeI | CTAG | 1 cut(s) | 297 |
| MaeII | ACGT | 3 cut(s) | 174, 179, 212 |
| MalI | GATC | 7 cut(s) | 455, 534, 540, 552, 573, 697, 843 |
| MauBI | CGCGCGCG | 1 cut(s) | 131 |
| MboI | GATC | 7 cut(s) | 453, 532, 538, 550, 571, 695, 841 |
| MboII | GAAGA | 6 cut(s) | 392, 395, 404, 925, 931, 949 |
| MfeI | CAATTG | 1 cut(s) | 727 |
| MflI | RGATCY | 4 cut(s) | 532, 538, 550, 695 |
| MluCI | AATT | 3 cut(s) | 328, 667, 727 |
| MluI | ACGCGT | 1 cut(s) | 262 |
| MmeI | TCCRAC | 1 cut(s) | 677 |
| MnlI | CCTC | 7 cut(s) | 379, 382, 469, 686, 885, 894, 909 |
| MroI | TCCGGA | 2 cut(s) | 496, 535 |
| MroXI | GAANNNNTTC | 1 cut(s) | 264 |
| MseI | TTAA | 3 cut(s) | 80, 312, 327 |
| MspA1I | CMGCKG | 4 cut(s) | 473, 856, 868, 878 |
| MspCI | CTTAAG | 1 cut(s) | 79 |
| MspI | CCGG | 8 cut(s) | 167, 485, 497, 536, 606, 626, 690, 845 |
| MspR9I | CCNGG | 2 cut(s) | 486, 846 |
| MunI | CAATTG | 1 cut(s) | 727 |
| MvnI | CGCG | 8 cut(s) | 104, 119, 131, 133, 135, 194, 200, 264 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 24, 41, 84, 194, 213 |
| NciI | CCSGG | 2 cut(s) | 486, 846 |
| NdeII | GATC | 7 cut(s) | 453, 532, 538, 550, 571, 695, 841 |
| NlaIII | CATG | 1 cut(s) | 1049 |
| NlaIV | GGNNCC | 4 cut(s) | 307, 534, 540, 777 |
| NmeAIII | GCCGAG | 1 cut(s) | 212 |
| NmuCI | GTSAC | 6 cut(s) | 120, 175, 208, 254, 299, 737 |
| NotI | GCGGCCGC | 1 cut(s) | 195 |
| PauI | GCGCGC | 1 cut(s) | 131 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 239 |
| PdmI | GAANNNNTTC | 1 cut(s) | 264 |
| PfeI | GAWTC | 7 cut(s) | 20, 89, 287, 584, 634, 649, 987 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 785 |
| PfoI | TCCNGGA | 1 cut(s) | 484 |
| PkrI | GCNGC | 7 cut(s) | 43, 67, 86, 106, 196, 199, 400 |
| PmaCI | CACGTG | 2 cut(s) | 180, 213 |
| PmlI | CACGTG | 2 cut(s) | 180, 213 |
| Ppu21I | YACGTR | 2 cut(s) | 180, 213 |
| PspCI | CACGTG | 2 cut(s) | 180, 213 |
| PspN4I | GGNNCC | 4 cut(s) | 307, 534, 540, 777 |
| PspPI | GGNCC | 1 cut(s) | 821 |
| PsuI | RGATCY | 4 cut(s) | 532, 538, 550, 695 |
| PteI | GCGCGC | 1 cut(s) | 131 |
| PvuII | CAGCTG | 2 cut(s) | 473, 878 |
| RsaI | GTAC | 3 cut(s) | 610, 905, 1077 |
| RsaNI | GTAC | 3 cut(s) | 609, 904, 1076 |
| SaqAI | TTAA | 3 cut(s) | 80, 312, 327 |
| SatI | GCNGC | 7 cut(s) | 42, 66, 85, 105, 195, 198, 399 |
| Sau3AI | GATC | 7 cut(s) | 453, 532, 538, 550, 571, 695, 841 |
| Sau96I | GGNCC | 1 cut(s) | 821 |
| ScrFI | CCNGG | 2 cut(s) | 486, 846 |
| SfaNI | GCATC | 1 cut(s) | 741 |
| SinI | GGWCC | 1 cut(s) | 821 |
| SmlI | CTYRAG | 1 cut(s) | 79 |
| SmoI | CTYRAG | 1 cut(s) | 79 |
| Sse9I | AATT | 3 cut(s) | 328, 667, 727 |
| SspMI | CTAG | 1 cut(s) | 297 |
| StyD4I | CCNGG | 2 cut(s) | 484, 844 |
| TaaI | ACNGT | 8 cut(s) | 221, 305, 344, 519, 643, 658, 818, 999 |
| TaiI | ACGT | 3 cut(s) | 177, 182, 215 |
| TaqI | TCGA | 1 cut(s) | 758 |
| TaqII | GACCGA | 1 cut(s) | 997 |
| TasI | AATT | 3 cut(s) | 328, 667, 727 |
| TauI | GCSGC | 4 cut(s) | 44, 107, 197, 200 |
| TfiI | GAWTC | 7 cut(s) | 20, 89, 287, 584, 634, 649, 987 |
| Tru1I | TTAA | 3 cut(s) | 80, 312, 327 |
| Tru9I | TTAA | 3 cut(s) | 80, 312, 327 |
| TscAI | CASTG | 2 cut(s) | 514, 838 |
| TseFI | GTSAC | 6 cut(s) | 120, 175, 208, 254, 299, 737 |
| TseI | GCWGC | 3 cut(s) | 65, 84, 398 |
| Tsp45I | GTSAC | 6 cut(s) | 120, 175, 208, 254, 299, 737 |
| TspDTI | ATGAA | 1 cut(s) | 518 |
| TspGWI | ACGGA | 7 cut(s) | 231, 267, 280, 298, 384, 531, 1028 |
| TspRI | CASTG | 2 cut(s) | 514, 838 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 785 |
| Vha464I | CTTAAG | 1 cut(s) | 79 |
| VpaK11BI | GGWCC | 1 cut(s) | 821 |
| XmnI | GAANNNNTTC | 1 cut(s) | 264 |
| XspI | CTAG | 1 cut(s) | 297 |