AT5G24930

zinc finger

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
8589457 .. 8590949
1493 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G24930.1

Sequence Viewer

Length: 1089 bp
ATGGCGTCAAAGCTCTGCGATTCGTGCAAATCAGCGACGGCGGCGTTATACTGCCGACCAGACGCAGCGTTTCTATGCTTAAGCTGCGATTCAAAAGTCCACGCGGCGAACAAACTCGCGTCACGACACGCGCGCGTGTGGATGTGTGAAGTGTGCGAGCAAGCACCGGCACACGTCACGTGCAAAGCAGACGCGGCCGCGTTATGCGTCACGTGCGACCGTGATATCCACTCGGCTAATCCGTTAGCTCGCCGTCACGAACGCGTTCCCGTTACTCCGTTTTACGATTCCGTCTCTAGTGACGGTTCCGTTAAACACACCGCCGTTAATTTCCTTGACGACTGTTACTTCTCCGATATAGATGGTAACGGAAGCCGTGAAGAAGAGGAGGAAGAAGCTGCTTCGTGGCTGTTACTTCCCAATCCAAAGACTACAACGACGGCGACGGCGGGGATCGTTGCTGTTACTTCAGCTGAGGAAGTTCCGGGAGATAGTCCGGAGATGAACACTGGTCAACAGTATTTGTTCTCGGATCCGGATCCGTATCTGGATCTGGATTATGGAAATGTTGATCCGAAGGTGGAATCGTTAGAGCAGAATAGCTCCGGTACTGATGGTGTTGTTCCGGTGGAGAATCGGACGGTTAGGATTCCGACGGTGAACGAGAATTGCTTTGAAATGGATTTTACCGGAGGATCTAAAGGCTTTACTTATGGTGGTGGTTACAATTGCATCAGTCACAGCGTGTCATCATCGTCGATGGAAGTGGGAGTGGTGCCAGATGGTGGTTCGGTGGCTGATGTATCGTATCCTTACGGTGGTCCTGCAACCAGTGGAGCTGATCCGGGGACACAGCGGGCTGTTCCGCTGACTTCAGCTGAGAGAGAAGCGAGGGTAATGAGGTACAGAGAGAAGAGGAAGAACAGGAAGTTTGAGAAGACTATAAGGTATGCTTCAAGGAAAGCGTATGCGGAAATGAGACCGAGAATCAAGGGACGGTTTGCGAAGCGGACGGATACAAATGAGAGCAATGATGTGGTTGGTCATGGTGGTATCTTTAGTGGGTTCGGACTTGTACCTACATTTTAG

Protein Analysis

362

Amino Acids

39.17

Weight (kDa)

5.38

Isoelectric Point (pI)

36.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 46 - 91 9.3e-07 B-box zinc finger
CCT PF06203 295 - 337 7.4e-18 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 775
AccB7I CCANNNNNTGG 1 cut(s) 785
AccII CGCG 8 cut(s) 104, 119, 131, 133, 135, 194, 200, 264
AccIII TCCGGA 2 cut(s) 496, 535
AclWI GGATC 9 cut(s) 461, 527, 533, 540, 546, 558, 566, 703, 836
AcoI YGGCCR 1 cut(s) 195
AcuI CTGAAG 2 cut(s) 453, 858
AcvI CACGTG 2 cut(s) 180, 213
AcyI GRCGYC 1 cut(s) 5
AdeI CACNNNGTG 1 cut(s) 745
AfaI GTAC 3 cut(s) 610, 905, 1077
AfiI CCNNNNNNNGG 2 cut(s) 785, 818
AflII CTTAAG 1 cut(s) 79
AflIII ACRYGT 2 cut(s) 172, 262
AgsI TTSAA 3 cut(s) 93, 677, 957
AjiI CACGTC 1 cut(s) 175
AluBI AGCT 8 cut(s) 13, 84, 248, 398, 473, 603, 839, 878
AluI AGCT 8 cut(s) 13, 84, 248, 398, 473, 603, 839, 878
Alw26I GTCTC 2 cut(s) 298, 973
AlwI GGATC 9 cut(s) 461, 527, 533, 540, 546, 558, 566, 703, 836
Aor13HI TCCGGA 2 cut(s) 496, 535
AoxI GGCC 1 cut(s) 195
ApeKI GCWGC 3 cut(s) 65, 84, 398
Asp700I GAANNNNTTC 1 cut(s) 264
AspLEI GCGC 2 cut(s) 133, 135
AspS9I GGNCC 1 cut(s) 821
AsuC2I CCSGG 2 cut(s) 486, 846
AsuHPI GGTGA 1 cut(s) 670
AvaII GGWCC 1 cut(s) 821
BamHI GGATCC 2 cut(s) 532, 538
BanI GGYRCC 1 cut(s) 775
BbrPI CACGTG 2 cut(s) 180, 213
BbsI GAAGAC 1 cut(s) 944
BbvCI CCTCAGC 1 cut(s) 474
BbvI GCAGC 3 cut(s) 71, 77, 385
BccI CCATC 4 cut(s) 356, 608, 754, 776
BceAI ACGGC 6 cut(s) 54, 237, 308, 360, 456, 462
BciVI GTATCC 2 cut(s) 819, 1009
BcnI CCSGG 2 cut(s) 486, 846
BcoDI GTCTC 2 cut(s) 298, 973
BfaI CTAG 1 cut(s) 297
BfrI CTTAAG 1 cut(s) 79
BfuI GTATCC 2 cut(s) 819, 1009
BisI GCNGC 7 cut(s) 42, 66, 85, 105, 195, 198, 399
BlsI GCNGC 7 cut(s) 43, 67, 86, 106, 196, 199, 400
Bme1390I CCNGG 2 cut(s) 486, 846
Bme18I GGWCC 1 cut(s) 821
BmgBI CACGTC 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 821
BmiI GGNNCC 4 cut(s) 307, 534, 540, 777
BmrFI CCNGG 2 cut(s) 486, 846
BmsI GCATC 1 cut(s) 741
BpiI GAAGAC 1 cut(s) 944
Bpu10I CCTNAGC 1 cut(s) 474
BpuMI CCSGG 2 cut(s) 486, 846
BsaAI YACGTR 2 cut(s) 180, 213
BsaBI GATNNNNATC 2 cut(s) 537, 543
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 973
BsaJI CCNNGG 1 cut(s) 845
BsaWI WCCGGW 5 cut(s) 496, 535, 605, 625, 689
Bsc4I CCNNNNNNNGG 2 cut(s) 785, 818
Bse118I RCCGGY 1 cut(s) 166
Bse1I ACTGG 2 cut(s) 514, 831
Bse3DI GCAATG 1 cut(s) 1036
Bse8I GATNNNNATC 2 cut(s) 537, 543
BseAI TCCGGA 2 cut(s) 496, 535
BseDI CCNNGG 1 cut(s) 845
BseGI GGATG 1 cut(s) 147
BseJI GATNNNNATC 2 cut(s) 537, 543
BseLI CCNNNNNNNGG 2 cut(s) 785, 818
BseMI GCAATG 1 cut(s) 1036
BseMII CTCAG 2 cut(s) 465, 870
BseNI ACTGG 2 cut(s) 514, 831
BsePI GCGCGC 1 cut(s) 131
BseRI GAGGAG 1 cut(s) 401
BseX3I CGGCCG 1 cut(s) 195
BseXI GCAGC 3 cut(s) 71, 77, 385
Bsh1236I CGCG 8 cut(s) 104, 119, 131, 133, 135, 194, 200, 264
Bsh1285I CGRYCG 2 cut(s) 198, 220
BshFI GGCC 1 cut(s) 197
BshNI GGYRCC 1 cut(s) 775
BsiEI CGRYCG 2 cut(s) 198, 220
BsiSI CCGG 8 cut(s) 167, 485, 497, 536, 606, 626, 690, 845
BslFI GGGAC 2 cut(s) 862, 1008
BslI CCNNNNNNNGG 2 cut(s) 785, 818
BsmAI GTCTC 2 cut(s) 298, 973
BsmBI CGTCTC 1 cut(s) 298
BsmFI GGGAC 2 cut(s) 862, 1008
BsnI GGCC 1 cut(s) 197
Bso31I GGTCTC 1 cut(s) 973
Bsp13I TCCGGA 2 cut(s) 496, 535
Bsp143I GATC 7 cut(s) 453, 532, 538, 550, 571, 695, 841
BspANI GGCC 1 cut(s) 197
BspCNI CTCAG 2 cut(s) 466, 871
BspEI TCCGGA 2 cut(s) 496, 535
BspFNI CGCG 8 cut(s) 104, 119, 131, 133, 135, 194, 200, 264
BspLI GGNNCC 4 cut(s) 307, 534, 540, 777
BspPI GGATC 9 cut(s) 461, 527, 533, 540, 546, 558, 566, 703, 836
BspT107I GGYRCC 1 cut(s) 775
BspTI CTTAAG 1 cut(s) 79
BspTNI GGTCTC 1 cut(s) 973
BsrDI GCAATG 1 cut(s) 1036
BsrFI RCCGGY 1 cut(s) 166
BsrI ACTGG 2 cut(s) 514, 831
BssAI RCCGGY 1 cut(s) 166
BssECI CCNNGG 1 cut(s) 845
BssHII GCGCGC 1 cut(s) 131
BssMI GATC 7 cut(s) 453, 532, 538, 550, 571, 695, 841
BssNI GRCGYC 1 cut(s) 5
Bst4CI ACNGT 8 cut(s) 221, 305, 344, 519, 643, 658, 818, 999
Bst6I CTCTTC 2 cut(s) 378, 908
BstACI GRCGYC 1 cut(s) 5
BstAFI CTTAAG 1 cut(s) 79
BstBAI YACGTR 2 cut(s) 180, 213
BstC8I GCNNGC 5 cut(s) 133, 158, 162, 250, 858
BstDEI CTNAG 2 cut(s) 474, 879
BstF5I GGATG 1 cut(s) 147
BstFNI CGCG 8 cut(s) 104, 119, 131, 133, 135, 194, 200, 264
BstHHI GCGC 2 cut(s) 133, 135
BstKTI GATC 7 cut(s) 456, 535, 541, 553, 574, 698, 844
BstMAI GTCTC 2 cut(s) 298, 973
BstMBI GATC 7 cut(s) 453, 532, 538, 550, 571, 695, 841
BstMCI CGRYCG 2 cut(s) 198, 220
BstMWI GCNNNNNNNGC 5 cut(s) 24, 41, 84, 194, 213
BstSCI CCNGG 2 cut(s) 484, 844
BstUI CGCG 8 cut(s) 104, 119, 131, 133, 135, 194, 200, 264
BstV1I GCAGC 3 cut(s) 71, 77, 385
BstV2I GAAGAC 1 cut(s) 944
BstX2I RGATCY 4 cut(s) 532, 538, 550, 695
BstYI RGATCY 4 cut(s) 532, 538, 550, 695
BstZI CGGCCG 1 cut(s) 195
BsuI GTATCC 2 cut(s) 819, 1009
BsuRI GGCC 1 cut(s) 197
BtrI CACGTC 1 cut(s) 175
BtsCI GGATG 1 cut(s) 147
BtsIMutI CAGTG 2 cut(s) 507, 838
Cac8I GCNNGC 5 cut(s) 133, 158, 162, 250, 858
CciNI GCGGCCGC 1 cut(s) 195
CfoI GCGC 2 cut(s) 133, 135
Cfr10I RCCGGY 1 cut(s) 166
Cfr13I GGNCC 1 cut(s) 821
CseI GACGC 4 cut(s) 71, 108, 196, 200
Csp6I GTAC 3 cut(s) 609, 904, 1076
CviAII CATG 1 cut(s) 1046
CviQI GTAC 3 cut(s) 609, 904, 1076
DdeI CTNAG 2 cut(s) 474, 879
DpnI GATC 7 cut(s) 455, 534, 540, 552, 573, 697, 843
DpnII GATC 7 cut(s) 453, 532, 538, 550, 571, 695, 841
DraIII CACNNNGTG 1 cut(s) 745
EaeI YGGCCR 1 cut(s) 195
EagI CGGCCG 1 cut(s) 195
Eam1104I CTCTTC 2 cut(s) 378, 908
EarI CTCTTC 2 cut(s) 378, 908
EclXI CGGCCG 1 cut(s) 195
Eco31I GGTCTC 1 cut(s) 973
Eco32I GATATC 1 cut(s) 226
Eco47I GGWCC 1 cut(s) 821
Eco52I CGGCCG 1 cut(s) 195
Eco57I CTGAAG 2 cut(s) 453, 858
Eco72I CACGTG 2 cut(s) 180, 213
EcoRV GATATC 1 cut(s) 226
Esp3I CGTCTC 1 cut(s) 298
FaeI CATG 1 cut(s) 1049
FalI AAGNNNNNCTT 2 cut(s) 937, 969
FaqI GGGAC 2 cut(s) 862, 1008
FatI CATG 1 cut(s) 1045
FauI CCCGC 2 cut(s) 442, 849
Fnu4HI GCNGC 7 cut(s) 42, 66, 85, 105, 195, 198, 399
FokI GGATG 1 cut(s) 154
Fsp4HI GCNGC 7 cut(s) 42, 66, 85, 105, 195, 198, 399
FspBI CTAG 1 cut(s) 297
GlaI GCGC 2 cut(s) 132, 134
GluI GCNGC 7 cut(s) 42, 66, 85, 105, 195, 198, 399
HaeIII GGCC 1 cut(s) 197
HapII CCGG 8 cut(s) 167, 485, 497, 536, 606, 626, 690, 845
HgaI GACGC 4 cut(s) 71, 108, 196, 200
HhaI GCGC 2 cut(s) 133, 135
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 1049
Hin6I GCGC 2 cut(s) 131, 133
HinP1I GCGC 2 cut(s) 131, 133
HincII GTYRAC 1 cut(s) 515
HindII GTYRAC 1 cut(s) 515
HinfI GANTC 7 cut(s) 20, 89, 287, 584, 634, 649, 987
HpaII CCGG 8 cut(s) 167, 485, 497, 536, 606, 626, 690, 845
HphI GGTGA 1 cut(s) 670
Hpy166II GTNNAC 3 cut(s) 100, 515, 661
Hpy188I TCNGA 6 cut(s) 355, 532, 576, 639, 654, 1070
Hpy188III TCNNGA 6 cut(s) 123, 257, 497, 536, 548, 554
Hpy8I GTNNAC 3 cut(s) 100, 515, 661
Hpy99I CGWCG 5 cut(s) 40, 442, 448, 658, 760
HpyAV CCTTC 1 cut(s) 571
HpyCH4III ACNGT 8 cut(s) 221, 305, 344, 519, 643, 658, 818, 999
HpyCH4IV ACGT 3 cut(s) 174, 179, 212
HpyCH4V TGCA 4 cut(s) 27, 183, 732, 827
HpyF10VI GCNNNNNNNGC 5 cut(s) 24, 41, 84, 194, 213
HpyF3I CTNAG 2 cut(s) 474, 879
HpySE526I ACGT 3 cut(s) 174, 179, 212
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 1049
HspAI GCGC 2 cut(s) 131, 133
Kpn2I TCCGGA 2 cut(s) 496, 535
Kzo9I GATC 7 cut(s) 453, 532, 538, 550, 571, 695, 841
LmnI GCTCC 2 cut(s) 608, 836
Lsp1109I GCAGC 3 cut(s) 71, 77, 385
LweI GCATC 1 cut(s) 741
MaeI CTAG 1 cut(s) 297
MaeII ACGT 3 cut(s) 174, 179, 212
MalI GATC 7 cut(s) 455, 534, 540, 552, 573, 697, 843
MauBI CGCGCGCG 1 cut(s) 131
MboI GATC 7 cut(s) 453, 532, 538, 550, 571, 695, 841
MboII GAAGA 6 cut(s) 392, 395, 404, 925, 931, 949
MfeI CAATTG 1 cut(s) 727
MflI RGATCY 4 cut(s) 532, 538, 550, 695
MluCI AATT 3 cut(s) 328, 667, 727
MluI ACGCGT 1 cut(s) 262
MmeI TCCRAC 1 cut(s) 677
MnlI CCTC 7 cut(s) 379, 382, 469, 686, 885, 894, 909
MroI TCCGGA 2 cut(s) 496, 535
MroXI GAANNNNTTC 1 cut(s) 264
MseI TTAA 3 cut(s) 80, 312, 327
MspA1I CMGCKG 4 cut(s) 473, 856, 868, 878
MspCI CTTAAG 1 cut(s) 79
MspI CCGG 8 cut(s) 167, 485, 497, 536, 606, 626, 690, 845
MspR9I CCNGG 2 cut(s) 486, 846
MunI CAATTG 1 cut(s) 727
MvnI CGCG 8 cut(s) 104, 119, 131, 133, 135, 194, 200, 264
MwoI GCNNNNNNNGC 5 cut(s) 24, 41, 84, 194, 213
NciI CCSGG 2 cut(s) 486, 846
NdeII GATC 7 cut(s) 453, 532, 538, 550, 571, 695, 841
NlaIII CATG 1 cut(s) 1049
NlaIV GGNNCC 4 cut(s) 307, 534, 540, 777
NmeAIII GCCGAG 1 cut(s) 212
NmuCI GTSAC 6 cut(s) 120, 175, 208, 254, 299, 737
NotI GCGGCCGC 1 cut(s) 195
PauI GCGCGC 1 cut(s) 131
PcsI WCGNNNNNNNCGW 1 cut(s) 239
PdmI GAANNNNTTC 1 cut(s) 264
PfeI GAWTC 7 cut(s) 20, 89, 287, 584, 634, 649, 987
PflMI CCANNNNNTGG 1 cut(s) 785
PfoI TCCNGGA 1 cut(s) 484
PkrI GCNGC 7 cut(s) 43, 67, 86, 106, 196, 199, 400
PmaCI CACGTG 2 cut(s) 180, 213
PmlI CACGTG 2 cut(s) 180, 213
Ppu21I YACGTR 2 cut(s) 180, 213
PspCI CACGTG 2 cut(s) 180, 213
PspN4I GGNNCC 4 cut(s) 307, 534, 540, 777
PspPI GGNCC 1 cut(s) 821
PsuI RGATCY 4 cut(s) 532, 538, 550, 695
PteI GCGCGC 1 cut(s) 131
PvuII CAGCTG 2 cut(s) 473, 878
RsaI GTAC 3 cut(s) 610, 905, 1077
RsaNI GTAC 3 cut(s) 609, 904, 1076
SaqAI TTAA 3 cut(s) 80, 312, 327
SatI GCNGC 7 cut(s) 42, 66, 85, 105, 195, 198, 399
Sau3AI GATC 7 cut(s) 453, 532, 538, 550, 571, 695, 841
Sau96I GGNCC 1 cut(s) 821
ScrFI CCNGG 2 cut(s) 486, 846
SfaNI GCATC 1 cut(s) 741
SinI GGWCC 1 cut(s) 821
SmlI CTYRAG 1 cut(s) 79
SmoI CTYRAG 1 cut(s) 79
Sse9I AATT 3 cut(s) 328, 667, 727
SspMI CTAG 1 cut(s) 297
StyD4I CCNGG 2 cut(s) 484, 844
TaaI ACNGT 8 cut(s) 221, 305, 344, 519, 643, 658, 818, 999
TaiI ACGT 3 cut(s) 177, 182, 215
TaqI TCGA 1 cut(s) 758
TaqII GACCGA 1 cut(s) 997
TasI AATT 3 cut(s) 328, 667, 727
TauI GCSGC 4 cut(s) 44, 107, 197, 200
TfiI GAWTC 7 cut(s) 20, 89, 287, 584, 634, 649, 987
Tru1I TTAA 3 cut(s) 80, 312, 327
Tru9I TTAA 3 cut(s) 80, 312, 327
TscAI CASTG 2 cut(s) 514, 838
TseFI GTSAC 6 cut(s) 120, 175, 208, 254, 299, 737
TseI GCWGC 3 cut(s) 65, 84, 398
Tsp45I GTSAC 6 cut(s) 120, 175, 208, 254, 299, 737
TspDTI ATGAA 1 cut(s) 518
TspGWI ACGGA 7 cut(s) 231, 267, 280, 298, 384, 531, 1028
TspRI CASTG 2 cut(s) 514, 838
Van91I CCANNNNNTGG 1 cut(s) 785
Vha464I CTTAAG 1 cut(s) 79
VpaK11BI GGWCC 1 cut(s) 821
XmnI GAANNNNTTC 1 cut(s) 264
XspI CTAG 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.