Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002665

Physical Location & Seq

Genomic Coordinates Forward (+)

9486775 .. 9487544

Gene Structure 770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031917

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGTGCAAGGCCGACGACGCAATGCTCTGCGTTACCTACGATCGAGAAATCCACTCTGCTAACCCCCTTCAGCCGCCGACACAAGAGTTCTGGTGGCTCCACGGAGACGGAGAAACTACTGAGGTCAGCAGAGAGGAAGCCGAGGCTGCTTCGTGGCTGCTCCCAGATCCTACCAATTTGAACTTGGGGCAGTACGTGTTCTCCAACATGGATCCGTATTTGGATCTGGATTACGAGGCAGTGGATCCGAAAGCTCCAGCCCAAGAGGAGCAGAACAGTAGCGGTACTGACGGAGTGGTCCCTGTGCAAAGCATGACTGTCCAGCCTCAAAGCTTTGAAATGGAGTTGCCAAGATCCAAGCCTTTCATCTACGGCTACCATGGCCACTGTTTAAGCCAGAGTGTATCATCATCCTCTATGGATGTTAGCATCATGCCAGATGGCAACATGCTGACGGAGTTGTTAGATCCCTACCACAAGTCGATCGGCGATCAGGTAACGCATCCGACGGTTCAGATTTCATTGGCGGAACGGGCAGCTAGGGTGTTGAGGTATAGAGAGAAGAGAAAGAACCGAAAGTTCGAAAAGACGATTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009889 GO:0009909 GO:0009987 GO:0010017 GO:0010099 GO:0010114 GO:0010161 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

200

Amino Acids

22.55

Weight (kDa)

4.86

Isoelectric Point (pI)

45.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24930
fragaria_vesca	FvH4_2g41420 FvH4_2g41420
malus_domestica	MD08G1049600.v1.1 MD15G1045000.v1.1
prunus_persica	Prupe.1G019200_v2.0.a1 Prupe.1G398700_v2.0.a1 Prupe.1G398700_v2.0.a1
pyrus_communis	pycom01g05670 pycom08g04150 pycom15g04180
rosa_chinensis	RchiOBHm_Chr3g0493071 RchiOBHm_Chr4g0429731 RchiOBHm_Chr4g0429741 RchiOBHm_Chr5g0033381 RchiOBHm_Chr5g0037591 RchiOBHm_Chr5g0068911 RchiOBHm_Chr5g0068921 RchiOBHm_Chr6g0299051
rosa_laevigata	RLG00000011466 RLG00000027505 RLG00000031917 RLG00000032258
rosa_multiflora	Rmu_co8169200.1_g000001 Rmu_co8181194.1_g000001 Rmu_sc0000981.1_g000006
rosa_roxburghii	Rroxscaffold_7G00169050
rosa_rugosa	Rorug06G0219600 Rorug06G0284400
rosa_samantha	Rh3AG308000 Rh3CG322500 Rh3DG321400 Rh5AG231500 Rh5AG254900 Rh6AG395900 Rh6BG404500 Rh6CG410500 Rh6DG397100
rosa_wichuraiana	Rw4G030090 Rw6G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	296
AciI	CCGC	3 cut(s)	74, 282, 527
AclWI	GGATC	8 cut(s)	161, 206, 219, 231, 239, 252, 348, 461
AcoI	YGGCCR	1 cut(s)	382
AcuI	CTGAAG	1 cut(s)	53
AfaI	GTAC	2 cut(s)	194, 286
AflIII	ACRYGT	1 cut(s)	195
AgsI	TTSAA	2 cut(s)	181, 338
AluBI	AGCT	3 cut(s)	254, 333, 539
AluI	AGCT	3 cut(s)	254, 333, 539
Alw26I	GTCTC	1 cut(s)	99
AlwI	GGATC	8 cut(s)	161, 206, 219, 231, 239, 252, 348, 461
AoxI	GGCC	2 cut(s)	9, 382
ApeKI	GCWGC	3 cut(s)	146, 157, 536
AspS9I	GGNCC	1 cut(s)	298
AsuII	TTCGAA	1 cut(s)	582
AvaII	GGWCC	1 cut(s)	298
BalI	TGGCCA	1 cut(s)	384
BamHI	GGATCC	2 cut(s)	211, 244
BbvI	GCAGC	3 cut(s)	133, 144, 548
BccI	CCATC	1 cut(s)	434
BceAI	ACGGC	1 cut(s)	388
BcoDI	GTCTC	1 cut(s)	99
BfaI	CTAG	1 cut(s)	540
BisI	GCNGC	4 cut(s)	74, 147, 158, 537
BlsI	GCNGC	4 cut(s)	75, 148, 159, 538
Bme18I	GGWCC	1 cut(s)	298
BmgT120I	GGNCC	1 cut(s)	298
BmiI	GGNNCC	4 cut(s)	98, 213, 246, 300
BmsI	GCATC	2 cut(s)	438, 511
BpmI	CTGGAG	1 cut(s)	240
Bpu14I	TTCGAA	1 cut(s)	582
BsaAI	YACGTR	1 cut(s)	196
BsaJI	CCNNGG	3 cut(s)	100, 141, 379
BsaXI	ACNNNNNCTCC	2 cut(s)	185, 215
Bse3DI	GCAATG	1 cut(s)	27
BseDI	CCNNGG	3 cut(s)	100, 141, 379
BseGI	GGATG	3 cut(s)	410, 427, 502
BseMI	GCAATG	1 cut(s)	27
BseMII	CTCAG	1 cut(s)	111
BseRI	GAGGAG	1 cut(s)	281
BseXI	GCAGC	3 cut(s)	133, 144, 548
Bsh1285I	CGRYCG	2 cut(s)	43, 486
BshFI	GGCC	2 cut(s)	11, 384
BsiEI	CGRYCG	2 cut(s)	43, 486
BslFI	GGGAC	1 cut(s)	284
BsmAI	GTCTC	1 cut(s)	99
BsmBI	CGTCTC	1 cut(s)	99
BsmFI	GGGAC	1 cut(s)	284
BsnI	GGCC	2 cut(s)	11, 384
Bsp119I	TTCGAA	1 cut(s)	582
Bsp143I	GATC	9 cut(s)	40, 166, 211, 223, 244, 353, 466, 483, 490
Bsp19I	CCATGG	1 cut(s)	379
BspACI	CCGC	3 cut(s)	74, 282, 527
BspANI	GGCC	2 cut(s)	11, 384
BspCNI	CTCAG	1 cut(s)	112
BspLI	GGNNCC	4 cut(s)	98, 213, 246, 300
BspPI	GGATC	8 cut(s)	161, 206, 219, 231, 239, 252, 348, 461
BspT104I	TTCGAA	1 cut(s)	582
BsrDI	GCAATG	1 cut(s)	27
BssECI	CCNNGG	3 cut(s)	100, 141, 379
BssMI	GATC	9 cut(s)	40, 166, 211, 223, 244, 353, 466, 483, 490
BssT1I	CCWWGG	1 cut(s)	379
Bst4CI	ACNGT	4 cut(s)	278, 319, 389, 511
Bst6I	CTCTTC	1 cut(s)	557
BstBAI	YACGTR	1 cut(s)	196
BstBI	TTCGAA	1 cut(s)	582
BstDEI	CTNAG	1 cut(s)	120
BstDSI	CCRYGG	2 cut(s)	100, 379
BstF5I	GGATG	3 cut(s)	410, 427, 502
BstKTI	GATC	9 cut(s)	43, 169, 214, 226, 247, 356, 469, 486, 493
BstMAI	GTCTC	1 cut(s)	99
BstMBI	GATC	9 cut(s)	40, 166, 211, 223, 244, 353, 466, 483, 490
BstMCI	CGRYCG	2 cut(s)	43, 486
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 146, 381, 533
BstNSI	RCATGY	1 cut(s)	451
BstV1I	GCAGC	3 cut(s)	133, 144, 548
BstX2I	RGATCY	6 cut(s)	166, 211, 223, 244, 353, 466
BstYI	RGATCY	6 cut(s)	166, 211, 223, 244, 353, 466
BsuRI	GGCC	2 cut(s)	11, 384
BtgI	CCRYGG	2 cut(s)	100, 379
BtsCI	GGATG	3 cut(s)	410, 427, 502
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	2 cut(s)	246, 385
Cfr13I	GGNCC	1 cut(s)	298
CseI	GACGC	1 cut(s)	26
Csp6I	GTAC	2 cut(s)	193, 285
CviAII	CATG	5 cut(s)	208, 313, 380, 433, 448
CviQI	GTAC	2 cut(s)	193, 285
DdeI	CTNAG	1 cut(s)	120
DpnI	GATC	9 cut(s)	42, 168, 213, 225, 246, 355, 468, 485, 492
DpnII	GATC	9 cut(s)	40, 166, 211, 223, 244, 353, 466, 483, 490
DrdI	GACNNNNNNGTC	1 cut(s)	296
DseDI	GACNNNNNNGTC	1 cut(s)	296
EaeI	YGGCCR	1 cut(s)	382
Eam1104I	CTCTTC	1 cut(s)	557
EarI	CTCTTC	1 cut(s)	557
EciI	GGCGGA	1 cut(s)	542
Eco130I	CCWWGG	1 cut(s)	379
Eco47I	GGWCC	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	53
EcoT14I	CCWWGG	1 cut(s)	379
ErhI	CCWWGG	1 cut(s)	379
Esp3I	CGTCTC	1 cut(s)	99
FaeI	CATG	5 cut(s)	211, 316, 383, 436, 451
FaiI	YATR	7 cut(s)	209, 314, 381, 419, 434, 449, 555
FaqI	GGGAC	1 cut(s)	284
FatI	CATG	5 cut(s)	207, 312, 379, 432, 447
Fnu4HI	GCNGC	4 cut(s)	74, 147, 158, 537
FokI	GGATG	3 cut(s)	397, 434, 489
Fsp4HI	GCNGC	4 cut(s)	74, 147, 158, 537
FspBI	CTAG	1 cut(s)	540
GluI	GCNGC	4 cut(s)	74, 147, 158, 537
GsuI	CTGGAG	1 cut(s)	240
HaeIII	GGCC	2 cut(s)	11, 384
HgaI	GACGC	1 cut(s)	26
Hin1II	CATG	5 cut(s)	211, 316, 383, 436, 451
HindIII	AAGCTT	1 cut(s)	331
HinfI	GANTC	1 cut(s)	592
Hpy188I	TCNGA	3 cut(s)	249, 507, 516
Hpy188III	TCNNGA	2 cut(s)	44, 227
Hpy99I	CGWCG	3 cut(s)	17, 20, 511
HpyAV	CCTTC	1 cut(s)	77
HpyCH4III	ACNGT	4 cut(s)	278, 319, 389, 511
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	2 cut(s)	6, 307
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 146, 381, 533
HpyF3I	CTNAG	1 cut(s)	120
HpySE526I	ACGT	1 cut(s)	195
Hsp92II	CATG	5 cut(s)	211, 316, 383, 436, 451
Kzo9I	GATC	9 cut(s)	40, 166, 211, 223, 244, 353, 466, 483, 490
LmnI	GCTCC	4 cut(s)	102, 165, 259, 268
LpnPI	CCDG	9 cut(s)	76, 177, 212, 270, 315, 335, 410, 450, 479
Lsp1109I	GCAGC	3 cut(s)	133, 144, 548
LweI	GCATC	2 cut(s)	438, 511
MaeI	CTAG	1 cut(s)	540
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	2 cut(s)	31, 496
MalI	GATC	9 cut(s)	42, 168, 213, 225, 246, 355, 468, 485, 492
MboI	GATC	9 cut(s)	40, 166, 211, 223, 244, 353, 466, 483, 490
MboII	GAAGA	1 cut(s)	574
MflI	RGATCY	6 cut(s)	166, 211, 223, 244, 353, 466
MlsI	TGGCCA	1 cut(s)	384
MluCI	AATT	1 cut(s)	175
MluNI	TGGCCA	1 cut(s)	384
MmeI	TCCRAC	2 cut(s)	228, 530
MnlI	CCTC	8 cut(s)	115, 127, 136, 229, 259, 336, 424, 543
Mox20I	TGGCCA	1 cut(s)	384
MscI	TGGCCA	1 cut(s)	384
MseI	TTAA	2 cut(s)	392, 598
Msp20I	TGGCCA	1 cut(s)	384
MwoI	GCNNNNNNNGC	4 cut(s)	17, 146, 381, 533
NcoI	CCATGG	1 cut(s)	379
NdeII	GATC	9 cut(s)	40, 166, 211, 223, 244, 353, 466, 483, 490
NlaIII	CATG	5 cut(s)	211, 316, 383, 436, 451
NlaIV	GGNNCC	4 cut(s)	98, 213, 246, 300
NmeAIII	GCCGAG	1 cut(s)	166
NspI	RCATGY	1 cut(s)	451
NspV	TTCGAA	1 cut(s)	582
PfeI	GAWTC	1 cut(s)	592
PkrI	GCNGC	4 cut(s)	75, 148, 159, 538
Ple19I	CGATCG	2 cut(s)	43, 486
Ppu21I	YACGTR	1 cut(s)	196
PspN4I	GGNNCC	4 cut(s)	98, 213, 246, 300
PspPI	GGNCC	1 cut(s)	298
PsuI	RGATCY	6 cut(s)	166, 211, 223, 244, 353, 466
PvuI	CGATCG	2 cut(s)	43, 486
RsaI	GTAC	2 cut(s)	194, 286
RsaNI	GTAC	2 cut(s)	193, 285
SaqAI	TTAA	2 cut(s)	392, 598
SatI	GCNGC	4 cut(s)	74, 147, 158, 537
Sau3AI	GATC	9 cut(s)	40, 166, 211, 223, 244, 353, 466, 483, 490
Sau96I	GGNCC	1 cut(s)	298
SetI	ASST	8 cut(s)	38, 126, 198, 256, 335, 498, 541, 554
SfaNI	GCATC	2 cut(s)	438, 511
SfuI	TTCGAA	1 cut(s)	582
SinI	GGWCC	1 cut(s)	298
Sse9I	AATT	1 cut(s)	175
SsiI	CCGC	3 cut(s)	74, 282, 527
SspMI	CTAG	1 cut(s)	540
StyI	CCWWGG	1 cut(s)	379
TaaI	ACNGT	4 cut(s)	278, 319, 389, 511
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	3 cut(s)	43, 482, 582
TasI	AATT	1 cut(s)	175
TauI	GCSGC	1 cut(s)	76
TfiI	GAWTC	1 cut(s)	592
Tru1I	TTAA	2 cut(s)	392, 598
Tru9I	TTAA	2 cut(s)	392, 598
TscAI	CASTG	2 cut(s)	246, 392
TseI	GCWGC	3 cut(s)	146, 157, 536
TspDTI	ATGAA	2 cut(s)	355, 510
TspGWI	ACGGA	5 cut(s)	117, 123, 204, 306, 470
TspRI	CASTG	2 cut(s)	246, 392
VpaK11BI	GGWCC	1 cut(s)	298
XceI	RCATGY	1 cut(s)	451
XcmI	CCANNNNNNNNNTGG	1 cut(s)	181
XspI	CTAG	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.