Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0002665

Physical Location & Seq

Genomic Coordinates Forward (+)

5542139 .. 5542324

Gene Structure 186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g05670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGCCATTTTACGATTCCGTGAACTCAACTGCGAACTCGATTCCCGCCATCAAATCTGCCGTCAAATTCTTTCATGATCTTTACTTCTCCGACGTGGACGGAGAAACCGAGACGAGCAGGGAGGAAGTCGAGGCTGTCCTGTGGCTACTCTCGAATCCCAAGGCTCAAGATGGCCAGTTTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009889 GO:0009909 GO:0009987 GO:0010017 GO:0010099 GO:0010114 GO:0010161 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

62

Amino Acids

6.86

Weight (kDa)

4.28

Isoelectric Point (pI)

48.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24930
fragaria_vesca	FvH4_2g41420 FvH4_2g41420
malus_domestica	MD08G1049600.v1.1 MD15G1045000.v1.1
prunus_persica	Prupe.1G019200_v2.0.a1 Prupe.1G398700_v2.0.a1 Prupe.1G398700_v2.0.a1
pyrus_communis	pycom01g05670 pycom08g04150 pycom15g04180
rosa_chinensis	RchiOBHm_Chr3g0493071 RchiOBHm_Chr4g0429731 RchiOBHm_Chr4g0429741 RchiOBHm_Chr5g0033381 RchiOBHm_Chr5g0037591 RchiOBHm_Chr5g0068911 RchiOBHm_Chr5g0068921 RchiOBHm_Chr6g0299051
rosa_laevigata	RLG00000011466 RLG00000027505 RLG00000031917 RLG00000032258
rosa_multiflora	Rmu_co8169200.1_g000001 Rmu_co8181194.1_g000001 Rmu_sc0000981.1_g000006
rosa_roxburghii	Rroxscaffold_7G00169050
rosa_rugosa	Rorug06G0219600 Rorug06G0284400
rosa_samantha	Rh3AG308000 Rh3CG322500 Rh3DG321400 Rh5AG231500 Rh5AG254900 Rh6AG395900 Rh6BG404500 Rh6CG410500 Rh6DG397100
rosa_wichuraiana	Rw4G030090 Rw6G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	45
AcoI	YGGCCR	1 cut(s)	172
AcsI	RAATTY	1 cut(s)	65
AjiI	CACGTC	1 cut(s)	94
Alw26I	GTCTC	1 cut(s)	104
AoxI	GGCC	1 cut(s)	172
ApoI	RAATTY	1 cut(s)	65
ArsI	GACNNNNNNTTYG	2 cut(s)	45, 77
BalI	TGGCCA	1 cut(s)	174
BccI	CCATC	2 cut(s)	56, 164
BceAI	ACGGC	1 cut(s)	44
BcoDI	GTCTC	1 cut(s)	104
BmgBI	CACGTC	1 cut(s)	94
BpuEI	CTTGAG	1 cut(s)	150
BsaJI	CCNNGG	1 cut(s)	159
Bse1I	ACTGG	1 cut(s)	175
BseDI	CCNNGG	1 cut(s)	159
BseNI	ACTGG	1 cut(s)	175
BshFI	GGCC	1 cut(s)	174
BsmAI	GTCTC	1 cut(s)	104
BsmBI	CGTCTC	1 cut(s)	104
BsnI	GGCC	1 cut(s)	174
Bsp143I	GATC	1 cut(s)	76
BspACI	CCGC	1 cut(s)	45
BspANI	GGCC	1 cut(s)	174
BspHI	TCATGA	1 cut(s)	73
BsrI	ACTGG	1 cut(s)	175
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	1 cut(s)	76
BssT1I	CCWWGG	1 cut(s)	159
BstKTI	GATC	1 cut(s)	79
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	1 cut(s)	76
BsuRI	GGCC	1 cut(s)	174
BtrI	CACGTC	1 cut(s)	94
CciI	TCATGA	1 cut(s)	73
CviAII	CATG	1 cut(s)	74
CviJI	RGCY	4 cut(s)	134, 145, 164, 174
CviKI_1	RGCY	4 cut(s)	134, 145, 164, 174
DpnI	GATC	1 cut(s)	78
DpnII	GATC	1 cut(s)	76
EaeI	YGGCCR	1 cut(s)	172
Eco130I	CCWWGG	1 cut(s)	159
EcoT14I	CCWWGG	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	159
Esp3I	CGTCTC	1 cut(s)	104
FaeI	CATG	1 cut(s)	77
FaiI	YATR	1 cut(s)	75
FatI	CATG	1 cut(s)	73
FauI	CCCGC	1 cut(s)	52
HaeIII	GGCC	1 cut(s)	174
Hin1II	CATG	1 cut(s)	77
HinfI	GANTC	3 cut(s)	14, 40, 154
Hpy166II	GTNNAC	2 cut(s)	22, 97
Hpy188I	TCNGA	1 cut(s)	91
Hpy188III	TCNNGA	3 cut(s)	74, 151, 167
Hpy8I	GTNNAC	2 cut(s)	22, 97
Hpy99I	CGWCG	1 cut(s)	95
HpyCH4IV	ACGT	1 cut(s)	93
HpySE526I	ACGT	1 cut(s)	93
Hsp92II	CATG	1 cut(s)	77
Kzo9I	GATC	1 cut(s)	76
LpnPI	CCDG	2 cut(s)	103, 152
MaeII	ACGT	1 cut(s)	93
MalI	GATC	1 cut(s)	78
MboI	GATC	1 cut(s)	76
MlsI	TGGCCA	1 cut(s)	174
MluCI	AATT	1 cut(s)	65
MluNI	TGGCCA	1 cut(s)	174
MmeI	TCCRAC	1 cut(s)	114
MnlI	CCTC	2 cut(s)	115, 124
Mox20I	TGGCCA	1 cut(s)	174
MscI	TGGCCA	1 cut(s)	174
Msp20I	TGGCCA	1 cut(s)	174
NdeII	GATC	1 cut(s)	76
NlaIII	CATG	1 cut(s)	77
PagI	TCATGA	1 cut(s)	73
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PfeI	GAWTC	3 cut(s)	14, 40, 154
Sau3AI	GATC	1 cut(s)	76
SetI	ASST	1 cut(s)	96
SmlI	CTYRAG	1 cut(s)	165
SmoI	CTYRAG	1 cut(s)	165
Sse9I	AATT	1 cut(s)	65
SsiI	CCGC	1 cut(s)	45
StyI	CCWWGG	1 cut(s)	159
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	3 cut(s)	38, 129, 152
TasI	AATT	1 cut(s)	65
TfiI	GAWTC	3 cut(s)	14, 40, 154
TspDTI	ATGAA	1 cut(s)	62
TspGWI	ACGGA	2 cut(s)	7, 114
XapI	RAATTY	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.