Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002665

Physical Location & Seq

Genomic Coordinates Reverse (-)

12272333 .. 12272944

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027505

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGCTGCGGTCAACTTCCTCGATGACCTCTACTTGTCCGACCCAGACGGAGACAGAGAGACGACTGAGGTCAGCAGAGAGGAAGCTGAGGCTGCTCCCAGATCCTACGGATCTGAACTTGGGGCAGTACGTGTTCTCCGACATGGATCCGTATTTGGATTTGGATTACGGGGCAGTGGATCCGAAAGCTCCAGCTCAGGAGGAGCAGAACAGTAGCGGTACTGACGGAGTGGTCCCTGTGCAAAGCAAGACTGTCCAGCCTCAAAGCTTTGAAATGGAGTTGCCAGGATCCAAGCCTTTCATCTACGGCTACCATGGCCACTATTTAAGCCAGATATCATCATCCTCTATGGATGTTAGCATCGTGCCAGATGACAACATGCTGACAGAGTTGTTAGATCCCTACCCCAAGTCAATCGGTGATCAGTTAACGCATCCGACGGTTCAGATTTCATCGACGGAACGGGAAGCTAGGGTGTTGAGGTATAGAGAGAAGAGAAAGAACCGAAAGTTCGAAAAGACGATTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009889 GO:0009909 GO:0009987 GO:0010017 GO:0010099 GO:0010114 GO:0010161 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

177

Amino Acids

19.99

Weight (kDa)

5.66

Isoelectric Point (pI)

52.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24930
fragaria_vesca	FvH4_2g41420 FvH4_2g41420
malus_domestica	MD08G1049600.v1.1 MD15G1045000.v1.1
prunus_persica	Prupe.1G019200_v2.0.a1 Prupe.1G398700_v2.0.a1 Prupe.1G398700_v2.0.a1
pyrus_communis	pycom01g05670 pycom08g04150 pycom15g04180
rosa_chinensis	RchiOBHm_Chr3g0493071 RchiOBHm_Chr4g0429731 RchiOBHm_Chr4g0429741 RchiOBHm_Chr5g0033381 RchiOBHm_Chr5g0037591 RchiOBHm_Chr5g0068911 RchiOBHm_Chr5g0068921 RchiOBHm_Chr6g0299051
rosa_laevigata	RLG00000011466 RLG00000027505 RLG00000031917 RLG00000032258
rosa_multiflora	Rmu_co8169200.1_g000001 Rmu_co8181194.1_g000001 Rmu_sc0000981.1_g000006
rosa_roxburghii	Rroxscaffold_7G00169050
rosa_rugosa	Rorug06G0219600 Rorug06G0284400
rosa_samantha	Rh3AG308000 Rh3CG322500 Rh3DG321400 Rh5AG231500 Rh5AG254900 Rh6AG395900 Rh6BG404500 Rh6CG410500 Rh6DG397100
rosa_wichuraiana	Rw4G030090 Rw6G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	230
AciI	CCGC	2 cut(s)	7, 216
AclWI	GGATC	9 cut(s)	95, 117, 140, 153, 173, 186, 282, 295, 392
AcoI	YGGCCR	1 cut(s)	316
AfaI	GTAC	2 cut(s)	128, 220
AflIII	ACRYGT	1 cut(s)	129
AgsI	TTSAA	1 cut(s)	272
AjnI	CCWGG	1 cut(s)	283
AluBI	AGCT	5 cut(s)	85, 188, 194, 267, 470
AluI	AGCT	5 cut(s)	85, 188, 194, 267, 470
Alw26I	GTCTC	2 cut(s)	44, 52
AlwI	GGATC	9 cut(s)	95, 117, 140, 153, 173, 186, 282, 295, 392
AoxI	GGCC	1 cut(s)	316
ApeKI	GCWGC	2 cut(s)	4, 91
AspS9I	GGNCC	1 cut(s)	232
AsuHPI	GGTGA	1 cut(s)	431
AsuII	TTCGAA	1 cut(s)	513
AvaII	GGWCC	1 cut(s)	232
BalI	TGGCCA	1 cut(s)	318
BamHI	GGATCC	3 cut(s)	145, 178, 287
BbvCI	CCTCAGC	1 cut(s)	86
BbvI	GCAGC	1 cut(s)	78
BceAI	ACGGC	1 cut(s)	322
BciT130I	CCWGG	1 cut(s)	285
BclI	TGATCA	1 cut(s)	421
BcoDI	GTCTC	2 cut(s)	44, 52
BfaI	CTAG	1 cut(s)	471
BisI	GCNGC	2 cut(s)	5, 92
BlsI	GCNGC	2 cut(s)	6, 93
Bme1390I	CCNGG	1 cut(s)	285
Bme18I	GGWCC	1 cut(s)	232
BmgT120I	GGNCC	1 cut(s)	232
BmiI	GGNNCC	4 cut(s)	147, 180, 234, 289
BmrFI	CCNGG	1 cut(s)	285
BmsI	GCATC	2 cut(s)	369, 442
BoxI	GACNNNNGTC	1 cut(s)	67
BpmI	CTGGAG	1 cut(s)	174
Bpu10I	CCTNAGC	2 cut(s)	86, 195
Bpu14I	TTCGAA	1 cut(s)	513
BsaAI	YACGTR	1 cut(s)	130
BsaJI	CCNNGG	1 cut(s)	313
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
BseBI	CCWGG	1 cut(s)	285
BseDI	CCNNGG	1 cut(s)	313
BseGI	GGATG	3 cut(s)	341, 358, 433
BseMII	CTCAG	3 cut(s)	56, 77, 209
BseRI	GAGGAG	1 cut(s)	215
BseXI	GCAGC	1 cut(s)	78
BshFI	GGCC	1 cut(s)	318
BslFI	GGGAC	1 cut(s)	218
BsmAI	GTCTC	2 cut(s)	44, 52
BsmBI	CGTCTC	1 cut(s)	52
BsmFI	GGGAC	1 cut(s)	218
BsnI	GGCC	1 cut(s)	318
Bsp119I	TTCGAA	1 cut(s)	513
Bsp143I	GATC	7 cut(s)	100, 109, 145, 178, 287, 397, 421
Bsp19I	CCATGG	1 cut(s)	313
BspACI	CCGC	2 cut(s)	7, 216
BspANI	GGCC	1 cut(s)	318
BspCNI	CTCAG	3 cut(s)	57, 78, 208
BspLI	GGNNCC	4 cut(s)	147, 180, 234, 289
BspPI	GGATC	9 cut(s)	95, 117, 140, 153, 173, 186, 282, 295, 392
BspT104I	TTCGAA	1 cut(s)	513
BssECI	CCNNGG	1 cut(s)	313
BssMI	GATC	7 cut(s)	100, 109, 145, 178, 287, 397, 421
BssT1I	CCWWGG	1 cut(s)	313
Bst2UI	CCWGG	1 cut(s)	285
Bst4CI	ACNGT	3 cut(s)	212, 253, 442
Bst6I	CTCTTC	1 cut(s)	488
BstBAI	YACGTR	1 cut(s)	130
BstBI	TTCGAA	1 cut(s)	513
BstDEI	CTNAG	3 cut(s)	65, 86, 195
BstDSI	CCRYGG	1 cut(s)	313
BstF5I	GGATG	3 cut(s)	341, 358, 433
BstKTI	GATC	7 cut(s)	103, 112, 148, 181, 290, 400, 424
BstMAI	GTCTC	2 cut(s)	44, 52
BstMBI	GATC	7 cut(s)	100, 109, 145, 178, 287, 397, 421
BstMWI	GCNNNNNNNGC	2 cut(s)	91, 315
BstNI	CCWGG	1 cut(s)	285
BstNSI	RCATGY	1 cut(s)	382
BstPAI	GACNNNNGTC	1 cut(s)	67
BstSCI	CCNGG	1 cut(s)	283
BstV1I	GCAGC	1 cut(s)	78
BstX2I	RGATCY	6 cut(s)	100, 109, 145, 178, 287, 397
BstYI	RGATCY	6 cut(s)	100, 109, 145, 178, 287, 397
BsuRI	GGCC	1 cut(s)	318
BtgI	CCRYGG	1 cut(s)	313
BtsCI	GGATG	3 cut(s)	341, 358, 433
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	180
Cfr13I	GGNCC	1 cut(s)	232
Csp6I	GTAC	2 cut(s)	127, 219
CviAII	CATG	3 cut(s)	142, 314, 379
CviQI	GTAC	2 cut(s)	127, 219
DdeI	CTNAG	3 cut(s)	65, 86, 195
DpnI	GATC	7 cut(s)	102, 111, 147, 180, 289, 399, 423
DpnII	GATC	7 cut(s)	100, 109, 145, 178, 287, 397, 421
DrdI	GACNNNNNNGTC	1 cut(s)	230
DseDI	GACNNNNNNGTC	1 cut(s)	230
EaeI	YGGCCR	1 cut(s)	316
Eam1104I	CTCTTC	1 cut(s)	488
EarI	CTCTTC	1 cut(s)	488
Eco130I	CCWWGG	1 cut(s)	313
Eco32I	GATATC	1 cut(s)	336
Eco47I	GGWCC	1 cut(s)	232
EcoRII	CCWGG	1 cut(s)	283
EcoRV	GATATC	1 cut(s)	336
EcoT14I	CCWWGG	1 cut(s)	313
ErhI	CCWWGG	1 cut(s)	313
Esp3I	CGTCTC	1 cut(s)	52
FaeI	CATG	3 cut(s)	145, 317, 382
FaiI	YATR	5 cut(s)	143, 315, 350, 380, 486
FaqI	GGGAC	1 cut(s)	218
FatI	CATG	3 cut(s)	141, 313, 378
FbaI	TGATCA	1 cut(s)	421
Fnu4HI	GCNGC	2 cut(s)	5, 92
FokI	GGATG	3 cut(s)	328, 365, 420
Fsp4HI	GCNGC	2 cut(s)	5, 92
FspBI	CTAG	1 cut(s)	471
GluI	GCNGC	2 cut(s)	5, 92
GsuI	CTGGAG	1 cut(s)	174
HaeIII	GGCC	1 cut(s)	318
Hin1II	CATG	3 cut(s)	145, 317, 382
HincII	GTYRAC	2 cut(s)	12, 429
HindII	GTYRAC	2 cut(s)	12, 429
HindIII	AAGCTT	1 cut(s)	265
HinfI	GANTC	1 cut(s)	523
HpaI	GTTAAC	1 cut(s)	429
HphI	GGTGA	1 cut(s)	431
Hpy166II	GTNNAC	2 cut(s)	12, 429
Hpy188I	TCNGA	6 cut(s)	39, 114, 139, 183, 438, 447
Hpy188III	TCNNGA	1 cut(s)	197
Hpy8I	GTNNAC	2 cut(s)	12, 429
Hpy99I	CGWCG	2 cut(s)	442, 460
HpyCH4III	ACNGT	3 cut(s)	212, 253, 442
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	1 cut(s)	241
HpyF10VI	GCNNNNNNNGC	2 cut(s)	91, 315
HpyF3I	CTNAG	3 cut(s)	65, 86, 195
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	3 cut(s)	145, 317, 382
Ksp22I	TGATCA	1 cut(s)	421
KspAI	GTTAAC	1 cut(s)	429
Kzo9I	GATC	7 cut(s)	100, 109, 145, 178, 287, 397, 421
LmnI	GCTCC	3 cut(s)	99, 193, 202
Lsp1109I	GCAGC	1 cut(s)	78
LweI	GCATC	2 cut(s)	369, 442
MaeI	CTAG	1 cut(s)	471
MaeII	ACGT	1 cut(s)	129
MalI	GATC	7 cut(s)	102, 111, 147, 180, 289, 399, 423
MboI	GATC	7 cut(s)	100, 109, 145, 178, 287, 397, 421
MboII	GAAGA	1 cut(s)	505
MflI	RGATCY	6 cut(s)	100, 109, 145, 178, 287, 397
MlsI	TGGCCA	1 cut(s)	318
MluNI	TGGCCA	1 cut(s)	318
MmeI	TCCRAC	3 cut(s)	62, 162, 461
MnlI	CCTC	9 cut(s)	28, 37, 60, 72, 81, 193, 270, 355, 474
Mox20I	TGGCCA	1 cut(s)	318
MscI	TGGCCA	1 cut(s)	318
MseI	TTAA	3 cut(s)	326, 428, 529
Msp20I	TGGCCA	1 cut(s)	318
MspR9I	CCNGG	1 cut(s)	285
MvaI	CCWGG	1 cut(s)	285
MwoI	GCNNNNNNNGC	2 cut(s)	91, 315
NcoI	CCATGG	1 cut(s)	313
NdeII	GATC	7 cut(s)	100, 109, 145, 178, 287, 397, 421
NlaIII	CATG	3 cut(s)	145, 317, 382
NlaIV	GGNNCC	4 cut(s)	147, 180, 234, 289
NspI	RCATGY	1 cut(s)	382
NspV	TTCGAA	1 cut(s)	513
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	523
PkrI	GCNGC	2 cut(s)	6, 93
Ppu21I	YACGTR	1 cut(s)	130
PshAI	GACNNNNGTC	1 cut(s)	67
Psp6I	CCWGG	1 cut(s)	283
PspGI	CCWGG	1 cut(s)	283
PspN4I	GGNNCC	4 cut(s)	147, 180, 234, 289
PspPI	GGNCC	1 cut(s)	232
PsuI	RGATCY	6 cut(s)	100, 109, 145, 178, 287, 397
RsaI	GTAC	2 cut(s)	128, 220
RsaNI	GTAC	2 cut(s)	127, 219
SaqAI	TTAA	3 cut(s)	326, 428, 529
SatI	GCNGC	2 cut(s)	5, 92
Sau3AI	GATC	7 cut(s)	100, 109, 145, 178, 287, 397, 421
Sau96I	GGNCC	1 cut(s)	232
ScrFI	CCNGG	1 cut(s)	285
SetI	ASST	9 cut(s)	29, 71, 87, 132, 190, 196, 269, 472, 485
SfaNI	GCATC	2 cut(s)	369, 442
SfuI	TTCGAA	1 cut(s)	513
SinI	GGWCC	1 cut(s)	232
SsiI	CCGC	2 cut(s)	7, 216
SspMI	CTAG	1 cut(s)	471
StyD4I	CCNGG	1 cut(s)	283
StyI	CCWWGG	1 cut(s)	313
TaaI	ACNGT	3 cut(s)	212, 253, 442
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	3 cut(s)	20, 455, 513
TfiI	GAWTC	1 cut(s)	523
Tru1I	TTAA	3 cut(s)	326, 428, 529
Tru9I	TTAA	3 cut(s)	326, 428, 529
TscAI	CASTG	1 cut(s)	180
TseI	GCWGC	2 cut(s)	4, 91
TspDTI	ATGAA	2 cut(s)	289, 441
TspGWI	ACGGA	5 cut(s)	62, 122, 138, 240, 473
TspRI	CASTG	1 cut(s)	180
VpaK11BI	GGWCC	1 cut(s)	232
XceI	RCATGY	1 cut(s)	382
XspI	CTAG	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.