Rh6BG404500

Zinc finger protein CONSTANS-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
63161284 .. 63162756
1473 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG404500.1

Sequence Viewer

Length: 1011 bp
ATGGCATCGAAGCTCTGCGACTCGTGCAAATCGGCGACGGCGACTCTGTTCTGCCGAGCAGACTCCGCTTTCCTGTGCGTAAACTGCGACACAAAGATCCACGCGGCCAACAAGCTGGCTTCCCGCCACGCCCGGGTCTGGTTGTGCGAGGTGTGCGAGCAGGCTCCCGCCCACGTCACGTGCAAGGCCGACGACGCCACCCTCTGCGTCACGTGCGACCGAGAAATCCACTCTGCTAACCCCCTCAGCCGCCGGCACGAGAGAGTCCCGGTCGCCCCGTTCTACGCCTCACTGAACTCGGACGACTCAACCGCCGTCAAATCTGATGCTGCCGTCAACTTCCTTGATGACCGATACTTGTCCGACGGAGATGGAGACGGAGACGGAGAGACGACTGAGGTCAGCAGAGAGGAAGCCGAGGCTGCTTCGTGGCTGCTCCCAAATCCTAAGGATCTGAATTCGGGGCAGTACGTGTTCTCTGACATGGATCCGTATTTGGATCTGGATTACGGGGCAGTGGATCCGAAAGCTCAAGCTCAAGCTCAAGCTCAGGAGGAGCAGAACAGTAGTGGTACTGACGGAGTGGTCCCTGTGCAAAGCAAGACCGTCCAGCCTCAAAGCTTTGAAATGGAGTTGCCAGGATCCAAGCCTTTCATCTATGGCTACCATGGCCACTGTTTAAGCCAGAGTGTATCATCATCCTCCTCTATGGATGTTAGCGTCGTGCCAGATGGCAACATGCTGACGGAGATGTCAGATCCCTACCCCAAGTCGATCGGCGATCAGTTATCGCATCCGGCGGTTCAGATTTCATCGGCGGATCGGGAAGCTAGGGTGTTGAGGTACAGAGAGAAGAGAAAGAACCGAAAGTTCGAGAAGACGATTCGTTACGCATCGCGAAAAGCTTATGCGGAGACGAGACCACGAATCAAAGGCAGGTTCGCTAAGCGCACAGAAGCGGAGATCGGAGCCGAACGTCTCTGCCGCTACGGCGTCGTTCCCTCTTTTTAG

Protein Analysis

336

Amino Acids

37.0

Weight (kDa)

5.69

Isoelectric Point (pI)

44.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 4 - 42 3.4e-07 B-box zinc finger
zf-B_box PF00643 46 - 91 7.9e-07 B-box zinc finger
CCT PF06203 275 - 317 5.1e-18 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 584, 751
Acc36I ACCTGC 1 cut(s) 927
AccII CGCG 2 cut(s) 104, 898
AcoI YGGCCR 2 cut(s) 105, 670
AcsI RAATTY 1 cut(s) 457
AcvI CACGTG 2 cut(s) 180, 213
AcyI GRCGYC 2 cut(s) 195, 993
AfaI GTAC 3 cut(s) 470, 574, 845
AfiI CCNNNNNNNGG 2 cut(s) 133, 138
AflIII ACRYGT 1 cut(s) 471
AgsI TTSAA 1 cut(s) 626
AjiI CACGTC 1 cut(s) 175
AjnI CCWGG 1 cut(s) 637
AluBI AGCT 9 cut(s) 13, 115, 530, 536, 542, 548, 621, 830, 905
AluI AGCT 9 cut(s) 13, 115, 530, 536, 542, 548, 621, 830, 905
Alw26I GTCTC 6 cut(s) 369, 375, 383, 908, 913, 983
Ama87I CYCGRG 1 cut(s) 132
AoxI GGCC 3 cut(s) 105, 186, 670
ApeKI GCWGC 3 cut(s) 329, 422, 433
ApoI RAATTY 1 cut(s) 457
AspLEI GCGC 1 cut(s) 951
AspS9I GGNCC 1 cut(s) 586
AsuC2I CCSGG 3 cut(s) 133, 134, 269
AvaI CYCGRG 1 cut(s) 132
AvaII GGWCC 1 cut(s) 586
AxyI CCTNAGG 1 cut(s) 447
BalI TGGCCA 1 cut(s) 672
BamHI GGATCC 3 cut(s) 487, 520, 641
BauI CACGAG 2 cut(s) 22, 257
BbrPI CACGTG 2 cut(s) 180, 213
BbsI GAAGAC 1 cut(s) 884
BbvCI CCTCAGC 1 cut(s) 245
BbvI GCAGC 3 cut(s) 316, 409, 420
BccI CCATC 2 cut(s) 365, 725
BceAI ACGGC 4 cut(s) 54, 299, 317, 1006
BciT130I CCWGG 1 cut(s) 639
BcnI CCSGG 3 cut(s) 133, 134, 269
BcoDI GTCTC 6 cut(s) 369, 375, 383, 908, 913, 983
BfaI CTAG 1 cut(s) 831
BfuAI ACCTGC 1 cut(s) 927
BglI GCCNNNNNGGC 1 cut(s) 990
BisI GCNGC 6 cut(s) 105, 250, 330, 423, 434, 985
BlpI GCTNAGC 1 cut(s) 945
BlsI GCNGC 6 cut(s) 106, 251, 331, 424, 435, 986
Bme1390I CCNGG 4 cut(s) 133, 134, 269, 639
Bme18I GGWCC 1 cut(s) 586
BmeT110I CYCGRG 1 cut(s) 132
BmgBI CACGTC 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 586
BmiI GGNNCC 6 cut(s) 165, 489, 522, 588, 643, 970
BmrFI CCNGG 4 cut(s) 133, 134, 269, 639
BmsI GCATC 4 cut(s) 14, 316, 802, 902
BoxI GACNNNNGTC 1 cut(s) 398
BpiI GAAGAC 1 cut(s) 884
Bpu10I CCTNAGC 2 cut(s) 245, 549
Bpu1102I GCTNAGC 1 cut(s) 945
BpuEI CTTGAG 3 cut(s) 516, 522, 528
BpuMI CCSGG 3 cut(s) 133, 134, 269
BsaAI YACGTR 3 cut(s) 180, 213, 472
BsaHI GRCGYC 2 cut(s) 195, 993
BsaI GGTCTC 1 cut(s) 913
BsaJI CCNNGG 3 cut(s) 132, 417, 667
Bsc4I CCNNNNNNNGG 2 cut(s) 133, 138
Bse118I RCCGGY 1 cut(s) 252
Bse21I CCTNAGG 1 cut(s) 447
BseBI CCWGG 1 cut(s) 639
BseDI CCNNGG 3 cut(s) 132, 417, 667
BseGI GGATG 3 cut(s) 698, 718, 793
BseLI CCNNNNNNNGG 2 cut(s) 133, 138
BseMII CTCAG 3 cut(s) 259, 387, 563
BseRI GAGGAG 2 cut(s) 569, 694
BseXI GCAGC 3 cut(s) 316, 409, 420
Bsh1236I CGCG 2 cut(s) 104, 898
Bsh1285I CGRYCG 3 cut(s) 220, 273, 777
BshFI GGCC 3 cut(s) 107, 188, 672
BsiEI CGRYCG 3 cut(s) 220, 273, 777
BsiHKCI CYCGRG 1 cut(s) 132
BsiSI CCGG 4 cut(s) 133, 253, 269, 797
BslFI GGGAC 2 cut(s) 251, 572
BslI CCNNNNNNNGG 2 cut(s) 133, 138
BsmAI GTCTC 6 cut(s) 369, 375, 383, 908, 913, 983
BsmBI CGTCTC 5 cut(s) 369, 375, 383, 908, 983
BsmFI GGGAC 2 cut(s) 251, 572
BsnI GGCC 3 cut(s) 107, 188, 672
Bso31I GGTCTC 1 cut(s) 913
BsoBI CYCGRG 1 cut(s) 132
Bsp1720I GCTNAGC 1 cut(s) 945
Bsp19I CCATGG 1 cut(s) 667
Bsp68I TCGCGA 1 cut(s) 898
BspANI GGCC 3 cut(s) 107, 188, 672
BspCNI CTCAG 3 cut(s) 258, 388, 562
BspFNI CGCG 2 cut(s) 104, 898
BspLI GGNNCC 6 cut(s) 165, 489, 522, 588, 643, 970
BspMI ACCTGC 1 cut(s) 927
BspTNI GGTCTC 1 cut(s) 913
BsrFI RCCGGY 1 cut(s) 252
BssAI RCCGGY 1 cut(s) 252
BssECI CCNNGG 3 cut(s) 132, 417, 667
BssNI GRCGYC 2 cut(s) 195, 993
BssSI CACGAG 2 cut(s) 22, 257
BssT1I CCWWGG 1 cut(s) 667
Bst2BI CACGAG 2 cut(s) 22, 257
Bst2UI CCWGG 1 cut(s) 639
Bst4CI ACNGT 3 cut(s) 566, 607, 677
Bst6I CTCTTC 1 cut(s) 848
BstACI GRCGYC 2 cut(s) 195, 993
BstBAI YACGTR 3 cut(s) 180, 213, 472
BstC8I GCNNGC 4 cut(s) 117, 158, 162, 254
BstDEI CTNAG 5 cut(s) 245, 396, 447, 549, 945
BstDSI CCRYGG 1 cut(s) 667
BstF5I GGATG 3 cut(s) 698, 718, 793
BstFNI CGCG 2 cut(s) 104, 898
BstHHI GCGC 1 cut(s) 951
BstMAI GTCTC 6 cut(s) 369, 375, 383, 908, 913, 983
BstMCI CGRYCG 3 cut(s) 220, 273, 777
BstMWI GCNNNNNNNGC 9 cut(s) 24, 65, 84, 153, 194, 213, 422, 669, 990
BstNI CCWGG 1 cut(s) 639
BstNSI RCATGY 1 cut(s) 742
BstPAI GACNNNNGTC 1 cut(s) 398
BstSCI CCNGG 4 cut(s) 131, 132, 267, 637
BstUI CGCG 2 cut(s) 104, 898
BstV1I GCAGC 3 cut(s) 316, 409, 420
BstV2I GAAGAC 1 cut(s) 884
BstX2I RGATCY 7 cut(s) 96, 451, 487, 499, 520, 641, 757
BstXI CCANNNNNNTGG 1 cut(s) 115
BstYI RGATCY 7 cut(s) 96, 451, 487, 499, 520, 641, 757
Bsu36I CCTNAGG 1 cut(s) 447
BsuRI GGCC 3 cut(s) 107, 188, 672
BtgI CCRYGG 1 cut(s) 667
BtgZI GCGATG 1 cut(s) 879
BtrI CACGTC 1 cut(s) 175
BtsCI GGATG 3 cut(s) 698, 718, 793
BtsI GCAGTG 1 cut(s) 522
BtsIMutI CAGTG 3 cut(s) 290, 522, 673
BtuMI TCGCGA 1 cut(s) 898
BveI ACCTGC 1 cut(s) 927
Cac8I GCNNGC 4 cut(s) 117, 158, 162, 254
CfoI GCGC 1 cut(s) 951
Cfr10I RCCGGY 1 cut(s) 252
Cfr13I GGNCC 1 cut(s) 586
Cfr9I CCCGGG 1 cut(s) 132
CseI GACGC 4 cut(s) 196, 203, 709, 982
Csp6I GTAC 3 cut(s) 469, 573, 844
CviAII CATG 3 cut(s) 484, 668, 739
CviQI GTAC 3 cut(s) 469, 573, 844
DdeI CTNAG 5 cut(s) 245, 396, 447, 549, 945
DrdI GACNNNNNNGTC 2 cut(s) 584, 751
DseDI GACNNNNNNGTC 2 cut(s) 584, 751
EaeI YGGCCR 2 cut(s) 105, 670
Eam1104I CTCTTC 1 cut(s) 848
EarI CTCTTC 1 cut(s) 848
EciI GGCGGA 1 cut(s) 833
Eco130I CCWWGG 1 cut(s) 667
Eco31I GGTCTC 1 cut(s) 913
Eco47I GGWCC 1 cut(s) 586
Eco72I CACGTG 2 cut(s) 180, 213
Eco81I CCTNAGG 1 cut(s) 447
Eco88I CYCGRG 1 cut(s) 132
EcoRI GAATTC 1 cut(s) 457
EcoRII CCWGG 1 cut(s) 637
EcoT14I CCWWGG 1 cut(s) 667
ErhI CCWWGG 1 cut(s) 667
Esp3I CGTCTC 5 cut(s) 369, 375, 383, 908, 983
FaeI CATG 3 cut(s) 487, 671, 742
FaiI YATR 6 cut(s) 485, 660, 669, 710, 740, 909
FaqI GGGAC 2 cut(s) 251, 572
FatI CATG 3 cut(s) 483, 667, 738
FauI CCCGC 2 cut(s) 131, 175
Fnu4HI GCNGC 6 cut(s) 105, 250, 330, 423, 434, 985
FokI GGATG 3 cut(s) 685, 725, 780
Fsp4HI GCNGC 6 cut(s) 105, 250, 330, 423, 434, 985
FspBI CTAG 1 cut(s) 831
GlaI GCGC 1 cut(s) 950
GluI GCNGC 6 cut(s) 105, 250, 330, 423, 434, 985
HaeIII GGCC 3 cut(s) 107, 188, 672
HapII CCGG 4 cut(s) 133, 253, 269, 797
HgaI GACGC 4 cut(s) 196, 203, 709, 982
HhaI GCGC 1 cut(s) 951
Hin1I GRCGYC 2 cut(s) 195, 993
Hin1II CATG 3 cut(s) 487, 671, 742
Hin6I GCGC 1 cut(s) 949
HinP1I GCGC 1 cut(s) 949
HincII GTYRAC 1 cut(s) 337
HindII GTYRAC 1 cut(s) 337
HindIII AAGCTT 2 cut(s) 619, 903
HinfI GANTC 7 cut(s) 20, 43, 62, 264, 305, 883, 927
HpaII CCGG 4 cut(s) 133, 253, 269, 797
Hpy166II GTNNAC 2 cut(s) 82, 337
Hpy188I TCNGA 9 cut(s) 301, 325, 364, 456, 481, 525, 757, 807, 968
Hpy188III TCNNGA 5 cut(s) 503, 551, 824, 874, 897
Hpy8I GTNNAC 2 cut(s) 82, 337
Hpy99I CGWCG 6 cut(s) 40, 194, 197, 368, 725, 998
HpyCH4III ACNGT 3 cut(s) 566, 607, 677
HpyCH4IV ACGT 5 cut(s) 174, 179, 212, 471, 976
HpyCH4V TGCA 3 cut(s) 27, 183, 595
HpyF10VI GCNNNNNNNGC 9 cut(s) 24, 65, 84, 153, 194, 213, 422, 669, 990
HpyF3I CTNAG 5 cut(s) 245, 396, 447, 549, 945
HpySE526I ACGT 5 cut(s) 174, 179, 212, 471, 976
Hsp92I GRCGYC 2 cut(s) 195, 993
Hsp92II CATG 3 cut(s) 487, 671, 742
HspAI GCGC 1 cut(s) 949
KroI GCCGGC 1 cut(s) 252
KroNI GCCGGC 1 cut(s) 254
LmnI GCTCC 4 cut(s) 169, 441, 556, 968
Lsp1109I GCAGC 3 cut(s) 316, 409, 420
LweI GCATC 4 cut(s) 14, 316, 802, 902
MaeI CTAG 1 cut(s) 831
MaeII ACGT 5 cut(s) 174, 179, 212, 471, 976
MaeIII GTNAC 3 cut(s) 175, 208, 887
MboII GAAGA 2 cut(s) 865, 889
MflI RGATCY 7 cut(s) 96, 451, 487, 499, 520, 641, 757
MlsI TGGCCA 1 cut(s) 672
MluCI AATT 1 cut(s) 457
MluNI TGGCCA 1 cut(s) 672
MlyI GAGTC 5 cut(s) 14, 37, 56, 273, 299
MmeI TCCRAC 1 cut(s) 387
Mox20I TGGCCA 1 cut(s) 672
MroNI GCCGGC 1 cut(s) 252
MscI TGGCCA 1 cut(s) 672
MseI TTAA 1 cut(s) 680
Msp20I TGGCCA 1 cut(s) 672
MspI CCGG 4 cut(s) 133, 253, 269, 797
MspR9I CCNGG 4 cut(s) 133, 134, 269, 639
MvaI CCWGG 1 cut(s) 639
MvnI CGCG 2 cut(s) 104, 898
MwoI GCNNNNNNNGC 9 cut(s) 24, 65, 84, 153, 194, 213, 422, 669, 990
NaeI GCCGGC 1 cut(s) 254
NciI CCSGG 3 cut(s) 133, 134, 269
NcoI CCATGG 1 cut(s) 667
NgoMIV GCCGGC 1 cut(s) 252
NlaIII CATG 3 cut(s) 487, 671, 742
NlaIV GGNNCC 6 cut(s) 165, 489, 522, 588, 643, 970
NmeAIII GCCGAG 2 cut(s) 80, 442
NmuCI GTSAC 2 cut(s) 175, 208
NruI TCGCGA 1 cut(s) 898
NspI RCATGY 1 cut(s) 742
PcsI WCGNNNNNNNCGW 1 cut(s) 38
PdiI GCCGGC 1 cut(s) 254
PfeI GAWTC 2 cut(s) 883, 927
PkrI GCNGC 6 cut(s) 106, 251, 331, 424, 435, 986
Ple19I CGATCG 1 cut(s) 777
PleI GAGTC 5 cut(s) 14, 37, 56, 272, 299
PmaCI CACGTG 2 cut(s) 180, 213
PmlI CACGTG 2 cut(s) 180, 213
PpsI GAGTC 5 cut(s) 14, 37, 56, 272, 299
Ppu21I YACGTR 3 cut(s) 180, 213, 472
PshAI GACNNNNGTC 1 cut(s) 398
Psp6I CCWGG 1 cut(s) 637
PspCI CACGTG 2 cut(s) 180, 213
PspGI CCWGG 1 cut(s) 637
PspN4I GGNNCC 6 cut(s) 165, 489, 522, 588, 643, 970
PspPI GGNCC 1 cut(s) 586
PsuI RGATCY 7 cut(s) 96, 451, 487, 499, 520, 641, 757
PvuI CGATCG 1 cut(s) 777
RruI TCGCGA 1 cut(s) 898
RsaI GTAC 3 cut(s) 470, 574, 845
RsaNI GTAC 3 cut(s) 469, 573, 844
SaqAI TTAA 1 cut(s) 680
SatI GCNGC 6 cut(s) 105, 250, 330, 423, 434, 985
Sau96I GGNCC 1 cut(s) 586
SchI GAGTC 5 cut(s) 14, 37, 56, 273, 299
ScrFI CCNGG 4 cut(s) 133, 134, 269, 639
SfaNI GCATC 4 cut(s) 14, 316, 802, 902
SinI GGWCC 1 cut(s) 586
SmaI CCCGGG 1 cut(s) 134
SmlI CTYRAG 3 cut(s) 531, 537, 543
SmoI CTYRAG 3 cut(s) 531, 537, 543
Sse9I AATT 1 cut(s) 457
SspMI CTAG 1 cut(s) 831
StyD4I CCNGG 4 cut(s) 131, 132, 267, 637
StyI CCWWGG 1 cut(s) 667
TaaI ACNGT 3 cut(s) 566, 607, 677
TaiI ACGT 5 cut(s) 177, 182, 215, 474, 979
TaqI TCGA 3 cut(s) 8, 773, 873
TaqII GACCGA 2 cut(s) 234, 366
TasI AATT 1 cut(s) 457
TauI GCSGC 3 cut(s) 107, 252, 987
TfiI GAWTC 2 cut(s) 883, 927
Tru1I TTAA 1 cut(s) 680
Tru9I TTAA 1 cut(s) 680
TscAI CASTG 3 cut(s) 297, 522, 680
TseFI GTSAC 2 cut(s) 175, 208
TseI GCWGC 3 cut(s) 329, 422, 433
Tsp45I GTSAC 2 cut(s) 175, 208
TspDTI ATGAA 2 cut(s) 643, 801
TspGWI ACGGA 6 cut(s) 381, 393, 399, 480, 594, 761
TspMI CCCGGG 1 cut(s) 132
TspRI CASTG 3 cut(s) 297, 522, 680
VpaK11BI GGWCC 1 cut(s) 586
XapI RAATTY 1 cut(s) 457
XceI RCATGY 1 cut(s) 742
XmaI CCCGGG 1 cut(s) 132
XspI CTAG 1 cut(s) 831
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.