Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8169200.1

Orthogroup ID

OG0002665

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 635

Gene Structure 635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8169200.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ctggcttcgcgccacgcccgggtctggttgtgcgaggtgtgcgagcaggctcccgcccacgtcacgtgcaaggccgacgacgccaccctctgcgtcacgtgcgaccgagaaatccactctgctaaccccctcagccgccggcacgagagagtcccggtggccccgttctacgactcactcaactcggacgactcaaccgccgtcaaatctgatgctgccgtcaacttcctcgacgaccgatacttgtccgacggagacggagacggagagacgactgaggtcagcagagaggaagccgaggctgcttcgtggctgctcccaaatcccaaggatctgaattcggggcagtacgtgttctccgacatggatccgtatttggatctggattacgggggagtggatccgaaagctcaaactcaggaggagcagaacagtagtggtactgacggagtggtccctgtgcaaagcaagaccgtccagcctcaaacctttgaaatggagttgccaggatccaagcctttcatctatggctaccatggccactgtttaagccagagt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009889 GO:0009909 GO:0009987 GO:0010017 GO:0010099 GO:0010114 GO:0010161 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

186

Amino Acids

20.43

Weight (kDa)

4.44

Isoelectric Point (pI)

48.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24930
fragaria_vesca	FvH4_2g41420 FvH4_2g41420
malus_domestica	MD08G1049600.v1.1 MD15G1045000.v1.1
prunus_persica	Prupe.1G019200_v2.0.a1 Prupe.1G398700_v2.0.a1 Prupe.1G398700_v2.0.a1
pyrus_communis	pycom01g05670 pycom08g04150 pycom15g04180
rosa_chinensis	RchiOBHm_Chr3g0493071 RchiOBHm_Chr4g0429731 RchiOBHm_Chr4g0429741 RchiOBHm_Chr5g0033381 RchiOBHm_Chr5g0037591 RchiOBHm_Chr5g0068911 RchiOBHm_Chr5g0068921 RchiOBHm_Chr6g0299051
rosa_laevigata	RLG00000011466 RLG00000027505 RLG00000031917 RLG00000032258
rosa_multiflora	Rmu_co8169200.1_g000001 Rmu_co8181194.1_g000001 Rmu_sc0000981.1_g000006
rosa_roxburghii	Rroxscaffold_7G00169050
rosa_rugosa	Rorug06G0219600 Rorug06G0284400
rosa_samantha	Rh3AG308000 Rh3CG322500 Rh3DG321400 Rh5AG231500 Rh5AG254900 Rh6AG395900 Rh6BG404500 Rh6CG410500 Rh6DG397100
rosa_wichuraiana	Rw4G030090 Rw6G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	452
AccII	CGCG	1 cut(s)	10
AciI	CCGC	3 cut(s)	54, 136, 198
AclWI	GGATC	8 cut(s)	339, 362, 375, 387, 395, 408, 504, 517
AcoI	YGGCCR	1 cut(s)	538
AcsI	RAATTY	1 cut(s)	337
AcvI	CACGTG	2 cut(s)	66, 99
AcyI	GRCGYC	1 cut(s)	81
AfaI	GTAC	2 cut(s)	350, 442
AfiI	CCNNNNNNNGG	2 cut(s)	19, 24
AflIII	ACRYGT	1 cut(s)	351
AgsI	TTSAA	1 cut(s)	494
AjiI	CACGTC	1 cut(s)	61
AjnI	CCWGG	1 cut(s)	505
AluBI	AGCT	1 cut(s)	410
AluI	AGCT	1 cut(s)	410
Alw26I	GTCTC	3 cut(s)	249, 255, 263
AlwI	GGATC	8 cut(s)	339, 362, 375, 387, 395, 408, 504, 517
Ama87I	CYCGRG	1 cut(s)	18
AoxI	GGCC	3 cut(s)	72, 159, 538
ApeKI	GCWGC	3 cut(s)	215, 302, 313
ApoI	RAATTY	1 cut(s)	337
AspLEI	GCGC	1 cut(s)	12
AspS9I	GGNCC	2 cut(s)	160, 454
AsuC2I	CCSGG	3 cut(s)	19, 20, 155
AvaI	CYCGRG	1 cut(s)	18
AvaII	GGWCC	1 cut(s)	454
BalI	TGGCCA	1 cut(s)	540
BamHI	GGATCC	3 cut(s)	367, 400, 509
BauI	CACGAG	1 cut(s)	143
BbrPI	CACGTG	2 cut(s)	66, 99
BbvCI	CCTCAGC	1 cut(s)	131
BbvI	GCAGC	3 cut(s)	202, 289, 300
BceAI	ACGGC	2 cut(s)	185, 203
BciT130I	CCWGG	1 cut(s)	507
BcnI	CCSGG	3 cut(s)	19, 20, 155
BcoDI	GTCTC	3 cut(s)	249, 255, 263
BisI	GCNGC	4 cut(s)	136, 216, 303, 314
BlsI	GCNGC	4 cut(s)	137, 217, 304, 315
Bme1390I	CCNGG	4 cut(s)	19, 20, 155, 507
Bme18I	GGWCC	1 cut(s)	454
BmeT110I	CYCGRG	1 cut(s)	18
BmgBI	CACGTC	1 cut(s)	61
BmgT120I	GGNCC	2 cut(s)	160, 454
BmiI	GGNNCC	6 cut(s)	51, 162, 369, 402, 456, 511
BmrFI	CCNGG	4 cut(s)	19, 20, 155, 507
BmsI	GCATC	1 cut(s)	202
BoxI	GACNNNNGTC	1 cut(s)	278
Bpu10I	CCTNAGC	1 cut(s)	131
BpuMI	CCSGG	3 cut(s)	19, 20, 155
BsaAI	YACGTR	3 cut(s)	66, 99, 352
BsaHI	GRCGYC	1 cut(s)	81
BsaJI	CCNNGG	4 cut(s)	18, 297, 327, 535
BsaXI	ACNNNNNCTCC	2 cut(s)	341, 371
Bsc4I	CCNNNNNNNGG	2 cut(s)	19, 24
Bse118I	RCCGGY	1 cut(s)	138
BseBI	CCWGG	1 cut(s)	507
BseDI	CCNNGG	4 cut(s)	18, 297, 327, 535
BseLI	CCNNNNNNNGG	2 cut(s)	19, 24
BseMII	CTCAG	3 cut(s)	145, 267, 431
BseRI	GAGGAG	1 cut(s)	437
BseXI	GCAGC	3 cut(s)	202, 289, 300
Bsh1236I	CGCG	1 cut(s)	10
Bsh1285I	CGRYCG	2 cut(s)	106, 238
BshFI	GGCC	3 cut(s)	74, 161, 540
BsiEI	CGRYCG	2 cut(s)	106, 238
BsiHKCI	CYCGRG	1 cut(s)	18
BsiSI	CCGG	3 cut(s)	19, 139, 155
BslFI	GGGAC	2 cut(s)	137, 440
BslI	CCNNNNNNNGG	2 cut(s)	19, 24
BsmAI	GTCTC	3 cut(s)	249, 255, 263
BsmBI	CGTCTC	3 cut(s)	249, 255, 263
BsmFI	GGGAC	2 cut(s)	137, 440
BsnI	GGCC	3 cut(s)	74, 161, 540
BsoBI	CYCGRG	1 cut(s)	18
Bsp143I	GATC	5 cut(s)	331, 367, 379, 400, 509
Bsp19I	CCATGG	1 cut(s)	535
BspACI	CCGC	3 cut(s)	54, 136, 198
BspANI	GGCC	3 cut(s)	74, 161, 540
BspCNI	CTCAG	3 cut(s)	144, 268, 430
BspFNI	CGCG	1 cut(s)	10
BspLI	GGNNCC	6 cut(s)	51, 162, 369, 402, 456, 511
BspPI	GGATC	8 cut(s)	339, 362, 375, 387, 395, 408, 504, 517
BsrFI	RCCGGY	1 cut(s)	138
BssAI	RCCGGY	1 cut(s)	138
BssECI	CCNNGG	4 cut(s)	18, 297, 327, 535
BssMI	GATC	5 cut(s)	331, 367, 379, 400, 509
BssNI	GRCGYC	1 cut(s)	81
BssSI	CACGAG	1 cut(s)	143
BssT1I	CCWWGG	2 cut(s)	327, 535
Bst2BI	CACGAG	1 cut(s)	143
Bst2UI	CCWGG	1 cut(s)	507
Bst4CI	ACNGT	3 cut(s)	434, 475, 545
BstACI	GRCGYC	1 cut(s)	81
BstBAI	YACGTR	3 cut(s)	66, 99, 352
BstC8I	GCNNGC	3 cut(s)	44, 48, 140
BstDEI	CTNAG	3 cut(s)	131, 276, 417
BstDSI	CCRYGG	1 cut(s)	535
BstFNI	CGCG	1 cut(s)	10
BstHHI	GCGC	1 cut(s)	12
BstKTI	GATC	5 cut(s)	334, 370, 382, 403, 512
BstMAI	GTCTC	3 cut(s)	249, 255, 263
BstMBI	GATC	5 cut(s)	331, 367, 379, 400, 509
BstMCI	CGRYCG	2 cut(s)	106, 238
BstMWI	GCNNNNNNNGC	5 cut(s)	39, 80, 99, 302, 537
BstNI	CCWGG	1 cut(s)	507
BstPAI	GACNNNNGTC	1 cut(s)	278
BstSCI	CCNGG	4 cut(s)	17, 18, 153, 505
BstUI	CGCG	1 cut(s)	10
BstV1I	GCAGC	3 cut(s)	202, 289, 300
BstX2I	RGATCY	5 cut(s)	331, 367, 379, 400, 509
BstYI	RGATCY	5 cut(s)	331, 367, 379, 400, 509
BsuRI	GGCC	3 cut(s)	74, 161, 540
BtgI	CCRYGG	1 cut(s)	535
BtrI	CACGTC	1 cut(s)	61
BtsIMutI	CAGTG	1 cut(s)	541
Cac8I	GCNNGC	3 cut(s)	44, 48, 140
CfoI	GCGC	1 cut(s)	12
Cfr10I	RCCGGY	1 cut(s)	138
Cfr13I	GGNCC	2 cut(s)	160, 454
Cfr9I	CCCGGG	1 cut(s)	18
CseI	GACGC	2 cut(s)	82, 89
Csp6I	GTAC	2 cut(s)	349, 441
CviAII	CATG	2 cut(s)	364, 536
CviQI	GTAC	2 cut(s)	349, 441
DdeI	CTNAG	3 cut(s)	131, 276, 417
DpnI	GATC	5 cut(s)	333, 369, 381, 402, 511
DpnII	GATC	5 cut(s)	331, 367, 379, 400, 509
DrdI	GACNNNNNNGTC	1 cut(s)	452
DseDI	GACNNNNNNGTC	1 cut(s)	452
EaeI	YGGCCR	1 cut(s)	538
Eco130I	CCWWGG	2 cut(s)	327, 535
Eco47I	GGWCC	1 cut(s)	454
Eco72I	CACGTG	2 cut(s)	66, 99
Eco88I	CYCGRG	1 cut(s)	18
EcoRI	GAATTC	1 cut(s)	337
EcoRII	CCWGG	1 cut(s)	505
EcoT14I	CCWWGG	2 cut(s)	327, 535
ErhI	CCWWGG	2 cut(s)	327, 535
Esp3I	CGTCTC	3 cut(s)	249, 255, 263
FaeI	CATG	2 cut(s)	367, 539
FaiI	YATR	3 cut(s)	365, 528, 537
FaqI	GGGAC	2 cut(s)	137, 440
FatI	CATG	2 cut(s)	363, 535
FauI	CCCGC	1 cut(s)	61
Fnu4HI	GCNGC	4 cut(s)	136, 216, 303, 314
Fsp4HI	GCNGC	4 cut(s)	136, 216, 303, 314
GlaI	GCGC	1 cut(s)	11
GluI	GCNGC	4 cut(s)	136, 216, 303, 314
HaeIII	GGCC	3 cut(s)	74, 161, 540
HapII	CCGG	3 cut(s)	19, 139, 155
HgaI	GACGC	2 cut(s)	82, 89
HhaI	GCGC	1 cut(s)	12
Hin1I	GRCGYC	1 cut(s)	81
Hin1II	CATG	2 cut(s)	367, 539
Hin6I	GCGC	1 cut(s)	10
HinP1I	GCGC	1 cut(s)	10
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HinfI	GANTC	3 cut(s)	150, 173, 191
HpaII	CCGG	3 cut(s)	19, 139, 155
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	6 cut(s)	187, 211, 250, 336, 361, 405
Hpy188III	TCNNGA	2 cut(s)	383, 419
Hpy8I	GTNNAC	1 cut(s)	223
Hpy99I	CGWCG	4 cut(s)	80, 83, 236, 254
HpyCH4III	ACNGT	3 cut(s)	434, 475, 545
HpyCH4IV	ACGT	4 cut(s)	60, 65, 98, 351
HpyCH4V	TGCA	2 cut(s)	69, 463
HpyF10VI	GCNNNNNNNGC	5 cut(s)	39, 80, 99, 302, 537
HpyF3I	CTNAG	3 cut(s)	131, 276, 417
HpySE526I	ACGT	4 cut(s)	60, 65, 98, 351
Hsp92I	GRCGYC	1 cut(s)	81
Hsp92II	CATG	2 cut(s)	367, 539
HspAI	GCGC	1 cut(s)	10
KroI	GCCGGC	1 cut(s)	138
KroNI	GCCGGC	1 cut(s)	140
Kzo9I	GATC	5 cut(s)	331, 367, 379, 400, 509
LmnI	GCTCC	3 cut(s)	55, 321, 424
Lsp1109I	GCAGC	3 cut(s)	202, 289, 300
LweI	GCATC	1 cut(s)	202
MaeII	ACGT	4 cut(s)	60, 65, 98, 351
MaeIII	GTNAC	2 cut(s)	61, 94
MalI	GATC	5 cut(s)	333, 369, 381, 402, 511
MboI	GATC	5 cut(s)	331, 367, 379, 400, 509
MflI	RGATCY	5 cut(s)	331, 367, 379, 400, 509
MlsI	TGGCCA	1 cut(s)	540
MluCI	AATT	1 cut(s)	337
MluNI	TGGCCA	1 cut(s)	540
MlyI	GAGTC	3 cut(s)	159, 167, 185
MmeI	TCCRAC	2 cut(s)	273, 384
MnlI	CCTC	9 cut(s)	28, 98, 140, 239, 271, 283, 292, 415, 492
Mox20I	TGGCCA	1 cut(s)	540
MroNI	GCCGGC	1 cut(s)	138
MscI	TGGCCA	1 cut(s)	540
MseI	TTAA	1 cut(s)	548
Msp20I	TGGCCA	1 cut(s)	540
MspI	CCGG	3 cut(s)	19, 139, 155
MspR9I	CCNGG	4 cut(s)	19, 20, 155, 507
MvaI	CCWGG	1 cut(s)	507
MvnI	CGCG	1 cut(s)	10
MwoI	GCNNNNNNNGC	5 cut(s)	39, 80, 99, 302, 537
NaeI	GCCGGC	1 cut(s)	140
NciI	CCSGG	3 cut(s)	19, 20, 155
NcoI	CCATGG	1 cut(s)	535
NdeII	GATC	5 cut(s)	331, 367, 379, 400, 509
NgoMIV	GCCGGC	1 cut(s)	138
NlaIII	CATG	2 cut(s)	367, 539
NlaIV	GGNNCC	6 cut(s)	51, 162, 369, 402, 456, 511
NmeAIII	GCCGAG	1 cut(s)	322
NmuCI	GTSAC	2 cut(s)	61, 94
PcsI	WCGNNNNNNNCGW	1 cut(s)	357
PdiI	GCCGGC	1 cut(s)	140
PkrI	GCNGC	4 cut(s)	137, 217, 304, 315
PleI	GAGTC	3 cut(s)	158, 167, 185
PmaCI	CACGTG	2 cut(s)	66, 99
PmlI	CACGTG	2 cut(s)	66, 99
PpsI	GAGTC	3 cut(s)	158, 167, 185
Ppu21I	YACGTR	3 cut(s)	66, 99, 352
PshAI	GACNNNNGTC	1 cut(s)	278
Psp6I	CCWGG	1 cut(s)	505
PspCI	CACGTG	2 cut(s)	66, 99
PspGI	CCWGG	1 cut(s)	505
PspN4I	GGNNCC	6 cut(s)	51, 162, 369, 402, 456, 511
PspPI	GGNCC	2 cut(s)	160, 454
PsuI	RGATCY	5 cut(s)	331, 367, 379, 400, 509
RsaI	GTAC	2 cut(s)	350, 442
RsaNI	GTAC	2 cut(s)	349, 441
SaqAI	TTAA	1 cut(s)	548
SatI	GCNGC	4 cut(s)	136, 216, 303, 314
Sau3AI	GATC	5 cut(s)	331, 367, 379, 400, 509
Sau96I	GGNCC	2 cut(s)	160, 454
SchI	GAGTC	3 cut(s)	159, 167, 185
ScrFI	CCNGG	4 cut(s)	19, 20, 155, 507
SetI	ASST	8 cut(s)	39, 63, 68, 101, 282, 354, 412, 491
SfaNI	GCATC	1 cut(s)	202
SinI	GGWCC	1 cut(s)	454
SmaI	CCCGGG	1 cut(s)	20
Sse9I	AATT	1 cut(s)	337
SsiI	CCGC	3 cut(s)	54, 136, 198
StyD4I	CCNGG	4 cut(s)	17, 18, 153, 505
StyI	CCWWGG	2 cut(s)	327, 535
TaaI	ACNGT	3 cut(s)	434, 475, 545
TaiI	ACGT	4 cut(s)	63, 68, 101, 354
TaqI	TCGA	1 cut(s)	231
TaqII	GACCGA	2 cut(s)	120, 252
TasI	AATT	1 cut(s)	337
TauI	GCSGC	1 cut(s)	138
Tru1I	TTAA	1 cut(s)	548
Tru9I	TTAA	1 cut(s)	548
TscAI	CASTG	1 cut(s)	548
TseFI	GTSAC	2 cut(s)	61, 94
TseI	GCWGC	3 cut(s)	215, 302, 313
Tsp45I	GTSAC	2 cut(s)	61, 94
TspDTI	ATGAA	1 cut(s)	511
TspGWI	ACGGA	5 cut(s)	267, 273, 279, 360, 462
TspMI	CCCGGG	1 cut(s)	18
TspRI	CASTG	1 cut(s)	548
VpaK11BI	GGWCC	1 cut(s)	454
XapI	RAATTY	1 cut(s)	337
XmaI	CCCGGG	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.