Rh6DG397100

Zinc finger protein CONSTANS-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Forward (+)
58786368 .. 58788181
1814 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG397100.1

Sequence Viewer

Length: 1005 bp
ATGGCATCGAAGCTCTGCGACTCGTGCAAATCGGCGACGGCGACTCTGTTCTGCCGAGCAGACTCCGCTTTCCTCTGCGTAAACTGCGACACAAAGATCCACGCGGCCAACAAGCTGGCTTCCCGCCACGCCCGGGTCTGGTTGTGCGAGGTGTGCGAGCAGGCTCCCGCCCACGTCACGTGCAAGGCCGACGACGCCACCCTCTGCGTCACGTGCGACCGAGAAATCCACTCTGCTAACCCCCTCAGCCGCCGGCACGAGAGAGTCCCGGTCGCCCCGTTCTACGCCTCACTGAACTCGGACGACTCAACCGCCGTCAAATCTGATGCTGCCGTCAACTTCCTTGATGACCGATACTTGTCCGACGGAGATGGAGACGGAGACGGAGAGACGACTGAGGTCAGCAGAGAGGAAGCCGAGGCTGCTTCGTGGCTGCTCCCAAATCCTAAGGATCTGAATTCGGGGCAGTACGTGTTCTCTGACATGGATCCGTATTTGGATCTGGATTACGGGGCAGTGGATCCTAAAGCTCAAGCTCAAGCTCAGGAGGAGCAGAACAGTAGTGGTACTGACGGAGTGGTCCCTGTGCAAAGCAAGACCGTCCAGCCTCAAAGCTTTGAAATGGAGTTGCCAGGATCCAAGCCTTTCATCTATGGCTACCATGGCCACTGTTTAAGCCAGAGTGTATCATCATCCTCCTCTATGGATGTTAGCGTCGTGCCAGATGGCAACATGCTGACGGAGATGTCAGATCCCTACCCCAAGTCGATCGGCGATCAGTTATCGCATCCGGCGGTTCAGATTTCGTCGGCGGATCGGGAAGCTAGGGTGTTGAGGTACAGAGAGAAGAGAAAGAACCGAAAGTTCGAGAAGACGATTCGTTACGCATCGCGAAAAGCTTATGCGGAGACGAGACCACGAATCAAAGGCAGGTTCGCTAAGCGCACAGAAGCGGAGATCGGAGCCGAACGTCTCTGCCGCTACGGCGTCGTTCCCTCTTTTTAG

Protein Analysis

334

Amino Acids

36.8

Weight (kDa)

5.69

Isoelectric Point (pI)

44.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 4 - 42 3.4e-07 B-box zinc finger
zf-B_box PF00643 46 - 91 7.8e-07 B-box zinc finger
CCT PF06203 273 - 315 5e-18 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 578, 745
Acc36I ACCTGC 1 cut(s) 921
AccII CGCG 2 cut(s) 104, 892
AcoI YGGCCR 2 cut(s) 105, 664
AcsI RAATTY 1 cut(s) 457
AcvI CACGTG 2 cut(s) 180, 213
AcyI GRCGYC 2 cut(s) 195, 987
AfaI GTAC 3 cut(s) 470, 568, 839
AfiI CCNNNNNNNGG 2 cut(s) 133, 138
AflIII ACRYGT 1 cut(s) 471
AgsI TTSAA 1 cut(s) 620
AjiI CACGTC 1 cut(s) 175
AjnI CCWGG 1 cut(s) 631
AluBI AGCT 8 cut(s) 13, 115, 530, 536, 542, 615, 824, 899
AluI AGCT 8 cut(s) 13, 115, 530, 536, 542, 615, 824, 899
Alw26I GTCTC 6 cut(s) 369, 375, 383, 902, 907, 977
Ama87I CYCGRG 1 cut(s) 132
AoxI GGCC 3 cut(s) 105, 186, 664
ApeKI GCWGC 3 cut(s) 329, 422, 433
ApoI RAATTY 1 cut(s) 457
AspLEI GCGC 1 cut(s) 945
AspS9I GGNCC 1 cut(s) 580
AsuC2I CCSGG 3 cut(s) 133, 134, 269
AvaI CYCGRG 1 cut(s) 132
AvaII GGWCC 1 cut(s) 580
AxyI CCTNAGG 1 cut(s) 447
BalI TGGCCA 1 cut(s) 666
BamHI GGATCC 3 cut(s) 487, 520, 635
BauI CACGAG 2 cut(s) 22, 257
BbrPI CACGTG 2 cut(s) 180, 213
BbsI GAAGAC 1 cut(s) 878
BbvCI CCTCAGC 1 cut(s) 245
BbvI GCAGC 3 cut(s) 316, 409, 420
BccI CCATC 2 cut(s) 365, 719
BceAI ACGGC 4 cut(s) 54, 299, 317, 1000
BciT130I CCWGG 1 cut(s) 633
BcnI CCSGG 3 cut(s) 133, 134, 269
BcoDI GTCTC 6 cut(s) 369, 375, 383, 902, 907, 977
BfaI CTAG 1 cut(s) 825
BfuAI ACCTGC 1 cut(s) 921
BglI GCCNNNNNGGC 1 cut(s) 984
BisI GCNGC 6 cut(s) 105, 250, 330, 423, 434, 979
BlpI GCTNAGC 1 cut(s) 939
BlsI GCNGC 6 cut(s) 106, 251, 331, 424, 435, 980
Bme1390I CCNGG 4 cut(s) 133, 134, 269, 633
Bme18I GGWCC 1 cut(s) 580
BmeT110I CYCGRG 1 cut(s) 132
BmgBI CACGTC 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 580
BmiI GGNNCC 6 cut(s) 165, 489, 522, 582, 637, 964
BmrFI CCNGG 4 cut(s) 133, 134, 269, 633
BmsI GCATC 4 cut(s) 14, 316, 796, 896
BoxI GACNNNNGTC 1 cut(s) 398
BpiI GAAGAC 1 cut(s) 878
Bpu10I CCTNAGC 2 cut(s) 245, 543
Bpu1102I GCTNAGC 1 cut(s) 939
BpuEI CTTGAG 2 cut(s) 516, 522
BpuMI CCSGG 3 cut(s) 133, 134, 269
BsaAI YACGTR 3 cut(s) 180, 213, 472
BsaHI GRCGYC 2 cut(s) 195, 987
BsaI GGTCTC 1 cut(s) 907
BsaJI CCNNGG 3 cut(s) 132, 417, 661
Bsc4I CCNNNNNNNGG 2 cut(s) 133, 138
Bse118I RCCGGY 1 cut(s) 252
Bse21I CCTNAGG 1 cut(s) 447
BseBI CCWGG 1 cut(s) 633
BseDI CCNNGG 3 cut(s) 132, 417, 661
BseGI GGATG 3 cut(s) 692, 712, 787
BseLI CCNNNNNNNGG 2 cut(s) 133, 138
BseMII CTCAG 3 cut(s) 259, 387, 557
BseRI GAGGAG 2 cut(s) 563, 688
BseXI GCAGC 3 cut(s) 316, 409, 420
Bsh1236I CGCG 2 cut(s) 104, 892
Bsh1285I CGRYCG 3 cut(s) 220, 273, 771
BshFI GGCC 3 cut(s) 107, 188, 666
BsiEI CGRYCG 3 cut(s) 220, 273, 771
BsiHKCI CYCGRG 1 cut(s) 132
BsiSI CCGG 4 cut(s) 133, 253, 269, 791
BslFI GGGAC 2 cut(s) 251, 566
BslI CCNNNNNNNGG 2 cut(s) 133, 138
BsmAI GTCTC 6 cut(s) 369, 375, 383, 902, 907, 977
BsmBI CGTCTC 5 cut(s) 369, 375, 383, 902, 977
BsmFI GGGAC 2 cut(s) 251, 566
BsnI GGCC 3 cut(s) 107, 188, 666
Bso31I GGTCTC 1 cut(s) 907
BsoBI CYCGRG 1 cut(s) 132
Bsp1720I GCTNAGC 1 cut(s) 939
Bsp19I CCATGG 1 cut(s) 661
Bsp68I TCGCGA 1 cut(s) 892
BspANI GGCC 3 cut(s) 107, 188, 666
BspCNI CTCAG 3 cut(s) 258, 388, 556
BspFNI CGCG 2 cut(s) 104, 892
BspLI GGNNCC 6 cut(s) 165, 489, 522, 582, 637, 964
BspMI ACCTGC 1 cut(s) 921
BspTNI GGTCTC 1 cut(s) 907
BsrFI RCCGGY 1 cut(s) 252
BssAI RCCGGY 1 cut(s) 252
BssECI CCNNGG 3 cut(s) 132, 417, 661
BssNI GRCGYC 2 cut(s) 195, 987
BssSI CACGAG 2 cut(s) 22, 257
BssT1I CCWWGG 1 cut(s) 661
Bst2BI CACGAG 2 cut(s) 22, 257
Bst2UI CCWGG 1 cut(s) 633
Bst4CI ACNGT 3 cut(s) 560, 601, 671
Bst6I CTCTTC 1 cut(s) 842
BstACI GRCGYC 2 cut(s) 195, 987
BstBAI YACGTR 3 cut(s) 180, 213, 472
BstC8I GCNNGC 4 cut(s) 117, 158, 162, 254
BstDEI CTNAG 5 cut(s) 245, 396, 447, 543, 939
BstDSI CCRYGG 1 cut(s) 661
BstF5I GGATG 3 cut(s) 692, 712, 787
BstFNI CGCG 2 cut(s) 104, 892
BstHHI GCGC 1 cut(s) 945
BstMAI GTCTC 6 cut(s) 369, 375, 383, 902, 907, 977
BstMCI CGRYCG 3 cut(s) 220, 273, 771
BstMWI GCNNNNNNNGC 9 cut(s) 24, 65, 84, 153, 194, 213, 422, 663, 984
BstNI CCWGG 1 cut(s) 633
BstNSI RCATGY 1 cut(s) 736
BstPAI GACNNNNGTC 1 cut(s) 398
BstSCI CCNGG 4 cut(s) 131, 132, 267, 631
BstUI CGCG 2 cut(s) 104, 892
BstV1I GCAGC 3 cut(s) 316, 409, 420
BstV2I GAAGAC 1 cut(s) 878
BstX2I RGATCY 7 cut(s) 96, 451, 487, 499, 520, 635, 751
BstXI CCANNNNNNTGG 1 cut(s) 115
BstYI RGATCY 7 cut(s) 96, 451, 487, 499, 520, 635, 751
Bsu36I CCTNAGG 1 cut(s) 447
BsuRI GGCC 3 cut(s) 107, 188, 666
BtgI CCRYGG 1 cut(s) 661
BtgZI GCGATG 1 cut(s) 873
BtrI CACGTC 1 cut(s) 175
BtsCI GGATG 3 cut(s) 692, 712, 787
BtsI GCAGTG 1 cut(s) 522
BtsIMutI CAGTG 3 cut(s) 290, 522, 667
BtuMI TCGCGA 1 cut(s) 892
BveI ACCTGC 1 cut(s) 921
Cac8I GCNNGC 4 cut(s) 117, 158, 162, 254
CfoI GCGC 1 cut(s) 945
Cfr10I RCCGGY 1 cut(s) 252
Cfr13I GGNCC 1 cut(s) 580
Cfr9I CCCGGG 1 cut(s) 132
CseI GACGC 4 cut(s) 196, 203, 703, 976
Csp6I GTAC 3 cut(s) 469, 567, 838
CviAII CATG 3 cut(s) 484, 662, 733
CviQI GTAC 3 cut(s) 469, 567, 838
DdeI CTNAG 5 cut(s) 245, 396, 447, 543, 939
DrdI GACNNNNNNGTC 2 cut(s) 578, 745
DseDI GACNNNNNNGTC 2 cut(s) 578, 745
EaeI YGGCCR 2 cut(s) 105, 664
Eam1104I CTCTTC 1 cut(s) 842
EarI CTCTTC 1 cut(s) 842
EciI GGCGGA 1 cut(s) 827
Eco130I CCWWGG 1 cut(s) 661
Eco31I GGTCTC 1 cut(s) 907
Eco47I GGWCC 1 cut(s) 580
Eco72I CACGTG 2 cut(s) 180, 213
Eco81I CCTNAGG 1 cut(s) 447
Eco88I CYCGRG 1 cut(s) 132
EcoRI GAATTC 1 cut(s) 457
EcoRII CCWGG 1 cut(s) 631
EcoT14I CCWWGG 1 cut(s) 661
ErhI CCWWGG 1 cut(s) 661
Esp3I CGTCTC 5 cut(s) 369, 375, 383, 902, 977
FaeI CATG 3 cut(s) 487, 665, 736
FaiI YATR 6 cut(s) 485, 654, 663, 704, 734, 903
FaqI GGGAC 2 cut(s) 251, 566
FatI CATG 3 cut(s) 483, 661, 732
FauI CCCGC 2 cut(s) 131, 175
Fnu4HI GCNGC 6 cut(s) 105, 250, 330, 423, 434, 979
FokI GGATG 3 cut(s) 679, 719, 774
Fsp4HI GCNGC 6 cut(s) 105, 250, 330, 423, 434, 979
FspBI CTAG 1 cut(s) 825
GlaI GCGC 1 cut(s) 944
GluI GCNGC 6 cut(s) 105, 250, 330, 423, 434, 979
HaeIII GGCC 3 cut(s) 107, 188, 666
HapII CCGG 4 cut(s) 133, 253, 269, 791
HgaI GACGC 4 cut(s) 196, 203, 703, 976
HhaI GCGC 1 cut(s) 945
Hin1I GRCGYC 2 cut(s) 195, 987
Hin1II CATG 3 cut(s) 487, 665, 736
Hin6I GCGC 1 cut(s) 943
HinP1I GCGC 1 cut(s) 943
HincII GTYRAC 1 cut(s) 337
HindII GTYRAC 1 cut(s) 337
HindIII AAGCTT 2 cut(s) 613, 897
HinfI GANTC 7 cut(s) 20, 43, 62, 264, 305, 877, 921
HpaII CCGG 4 cut(s) 133, 253, 269, 791
Hpy166II GTNNAC 2 cut(s) 82, 337
Hpy188I TCNGA 8 cut(s) 301, 325, 364, 456, 481, 751, 801, 962
Hpy188III TCNNGA 5 cut(s) 503, 545, 818, 868, 891
Hpy8I GTNNAC 2 cut(s) 82, 337
Hpy99I CGWCG 7 cut(s) 40, 194, 197, 368, 719, 811, 992
HpyCH4III ACNGT 3 cut(s) 560, 601, 671
HpyCH4IV ACGT 5 cut(s) 174, 179, 212, 471, 970
HpyCH4V TGCA 3 cut(s) 27, 183, 589
HpyF10VI GCNNNNNNNGC 9 cut(s) 24, 65, 84, 153, 194, 213, 422, 663, 984
HpyF3I CTNAG 5 cut(s) 245, 396, 447, 543, 939
HpySE526I ACGT 5 cut(s) 174, 179, 212, 471, 970
Hsp92I GRCGYC 2 cut(s) 195, 987
Hsp92II CATG 3 cut(s) 487, 665, 736
HspAI GCGC 1 cut(s) 943
KroI GCCGGC 1 cut(s) 252
KroNI GCCGGC 1 cut(s) 254
LmnI GCTCC 4 cut(s) 169, 441, 550, 962
Lsp1109I GCAGC 3 cut(s) 316, 409, 420
LweI GCATC 4 cut(s) 14, 316, 796, 896
MaeI CTAG 1 cut(s) 825
MaeII ACGT 5 cut(s) 174, 179, 212, 471, 970
MaeIII GTNAC 3 cut(s) 175, 208, 881
MboII GAAGA 2 cut(s) 859, 883
MflI RGATCY 7 cut(s) 96, 451, 487, 499, 520, 635, 751
MlsI TGGCCA 1 cut(s) 666
MluCI AATT 1 cut(s) 457
MluNI TGGCCA 1 cut(s) 666
MlyI GAGTC 5 cut(s) 14, 37, 56, 273, 299
MmeI TCCRAC 1 cut(s) 387
Mox20I TGGCCA 1 cut(s) 666
MroNI GCCGGC 1 cut(s) 252
MscI TGGCCA 1 cut(s) 666
MseI TTAA 1 cut(s) 674
Msp20I TGGCCA 1 cut(s) 666
MspI CCGG 4 cut(s) 133, 253, 269, 791
MspR9I CCNGG 4 cut(s) 133, 134, 269, 633
MvaI CCWGG 1 cut(s) 633
MvnI CGCG 2 cut(s) 104, 892
MwoI GCNNNNNNNGC 9 cut(s) 24, 65, 84, 153, 194, 213, 422, 663, 984
NaeI GCCGGC 1 cut(s) 254
NciI CCSGG 3 cut(s) 133, 134, 269
NcoI CCATGG 1 cut(s) 661
NgoMIV GCCGGC 1 cut(s) 252
NlaIII CATG 3 cut(s) 487, 665, 736
NlaIV GGNNCC 6 cut(s) 165, 489, 522, 582, 637, 964
NmeAIII GCCGAG 2 cut(s) 80, 442
NmuCI GTSAC 2 cut(s) 175, 208
NruI TCGCGA 1 cut(s) 892
NspI RCATGY 1 cut(s) 736
PcsI WCGNNNNNNNCGW 1 cut(s) 38
PdiI GCCGGC 1 cut(s) 254
PfeI GAWTC 2 cut(s) 877, 921
PkrI GCNGC 6 cut(s) 106, 251, 331, 424, 435, 980
Ple19I CGATCG 1 cut(s) 771
PleI GAGTC 5 cut(s) 14, 37, 56, 272, 299
PmaCI CACGTG 2 cut(s) 180, 213
PmlI CACGTG 2 cut(s) 180, 213
PpsI GAGTC 5 cut(s) 14, 37, 56, 272, 299
Ppu21I YACGTR 3 cut(s) 180, 213, 472
PshAI GACNNNNGTC 1 cut(s) 398
Psp6I CCWGG 1 cut(s) 631
PspCI CACGTG 2 cut(s) 180, 213
PspGI CCWGG 1 cut(s) 631
PspN4I GGNNCC 6 cut(s) 165, 489, 522, 582, 637, 964
PspPI GGNCC 1 cut(s) 580
PsuI RGATCY 7 cut(s) 96, 451, 487, 499, 520, 635, 751
PvuI CGATCG 1 cut(s) 771
RruI TCGCGA 1 cut(s) 892
RsaI GTAC 3 cut(s) 470, 568, 839
RsaNI GTAC 3 cut(s) 469, 567, 838
SaqAI TTAA 1 cut(s) 674
SatI GCNGC 6 cut(s) 105, 250, 330, 423, 434, 979
Sau96I GGNCC 1 cut(s) 580
SchI GAGTC 5 cut(s) 14, 37, 56, 273, 299
ScrFI CCNGG 4 cut(s) 133, 134, 269, 633
SfaNI GCATC 4 cut(s) 14, 316, 796, 896
SinI GGWCC 1 cut(s) 580
SmaI CCCGGG 1 cut(s) 134
SmlI CTYRAG 2 cut(s) 531, 537
SmoI CTYRAG 2 cut(s) 531, 537
Sse9I AATT 1 cut(s) 457
SspMI CTAG 1 cut(s) 825
StyD4I CCNGG 4 cut(s) 131, 132, 267, 631
StyI CCWWGG 1 cut(s) 661
TaaI ACNGT 3 cut(s) 560, 601, 671
TaiI ACGT 5 cut(s) 177, 182, 215, 474, 973
TaqI TCGA 3 cut(s) 8, 767, 867
TaqII GACCGA 2 cut(s) 234, 366
TasI AATT 1 cut(s) 457
TauI GCSGC 3 cut(s) 107, 252, 981
TfiI GAWTC 2 cut(s) 877, 921
Tru1I TTAA 1 cut(s) 674
Tru9I TTAA 1 cut(s) 674
TscAI CASTG 3 cut(s) 297, 522, 674
TseFI GTSAC 2 cut(s) 175, 208
TseI GCWGC 3 cut(s) 329, 422, 433
Tsp45I GTSAC 2 cut(s) 175, 208
TspDTI ATGAA 1 cut(s) 637
TspGWI ACGGA 6 cut(s) 381, 393, 399, 480, 588, 755
TspMI CCCGGG 1 cut(s) 132
TspRI CASTG 3 cut(s) 297, 522, 674
VpaK11BI GGWCC 1 cut(s) 580
XapI RAATTY 1 cut(s) 457
XceI RCATGY 1 cut(s) 736
XmaI CCCGGG 1 cut(s) 132
XspI CTAG 1 cut(s) 825
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.