Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8181194.1

Orthogroup ID

OG0002665

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 245

Gene Structure 245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8181194.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 245 bp

ccaagtcgatcggcgatcagttatcgcatccggcggttcagatttcatcggcggatcgggaagctagggtgttgaggtacagagagaagagaaagaaccgaaagttcgagaagacgattcgttacgcatcgcgaaaagcttatgcggagacgagaccacgaatcaaaggcaggttcgctaagcgcacagaagcggagatcgaagccgaacgtctctgccgctacggcgtcgttccctctttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009889 GO:0009909 GO:0009987 GO:0010017 GO:0010099 GO:0010114 GO:0010161 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

80

Amino Acids

9.43

Weight (kDa)

10.58

Isoelectric Point (pI)

39.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24930
fragaria_vesca	FvH4_2g41420 FvH4_2g41420
malus_domestica	MD08G1049600.v1.1 MD15G1045000.v1.1
prunus_persica	Prupe.1G019200_v2.0.a1 Prupe.1G398700_v2.0.a1 Prupe.1G398700_v2.0.a1
pyrus_communis	pycom01g05670 pycom08g04150 pycom15g04180
rosa_chinensis	RchiOBHm_Chr3g0493071 RchiOBHm_Chr4g0429731 RchiOBHm_Chr4g0429741 RchiOBHm_Chr5g0033381 RchiOBHm_Chr5g0037591 RchiOBHm_Chr5g0068911 RchiOBHm_Chr5g0068921 RchiOBHm_Chr6g0299051
rosa_laevigata	RLG00000011466 RLG00000027505 RLG00000031917 RLG00000032258
rosa_multiflora	Rmu_co8169200.1_g000001 Rmu_co8181194.1_g000001 Rmu_sc0000981.1_g000006
rosa_roxburghii	Rroxscaffold_7G00169050
rosa_rugosa	Rorug06G0219600 Rorug06G0284400
rosa_samantha	Rh3AG308000 Rh3CG322500 Rh3DG321400 Rh5AG231500 Rh5AG254900 Rh6AG395900 Rh6BG404500 Rh6CG410500 Rh6DG397100
rosa_wichuraiana	Rw4G030090 Rw6G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	161
AccII	CGCG	1 cut(s)	132
AciI	CCGC	5 cut(s)	34, 52, 145, 193, 219
AclWI	GGATC	1 cut(s)	62
AcyI	GRCGYC	1 cut(s)	227
AfaI	GTAC	1 cut(s)	79
AluBI	AGCT	2 cut(s)	64, 139
AluI	AGCT	2 cut(s)	64, 139
Alw26I	GTCTC	3 cut(s)	142, 147, 217
AlwI	GGATC	1 cut(s)	62
AspLEI	GCGC	1 cut(s)	185
BbsI	GAAGAC	1 cut(s)	118
BceAI	ACGGC	1 cut(s)	240
BcoDI	GTCTC	3 cut(s)	142, 147, 217
BfaI	CTAG	1 cut(s)	65
BfuAI	ACCTGC	1 cut(s)	161
BglI	GCCNNNNNGGC	1 cut(s)	224
BisI	GCNGC	1 cut(s)	219
BlpI	GCTNAGC	1 cut(s)	179
BlsI	GCNGC	1 cut(s)	220
BmsI	GCATC	2 cut(s)	36, 136
BpiI	GAAGAC	1 cut(s)	118
Bpu1102I	GCTNAGC	1 cut(s)	179
BsaHI	GRCGYC	1 cut(s)	227
BsaI	GGTCTC	1 cut(s)	147
BseGI	GGATG	1 cut(s)	27
Bsh1236I	CGCG	1 cut(s)	132
Bsh1285I	CGRYCG	1 cut(s)	11
BsiEI	CGRYCG	1 cut(s)	11
BsiSI	CCGG	1 cut(s)	31
BsmAI	GTCTC	3 cut(s)	142, 147, 217
BsmBI	CGTCTC	2 cut(s)	142, 217
Bso31I	GGTCTC	1 cut(s)	147
Bsp143I	GATC	4 cut(s)	8, 15, 54, 197
Bsp1720I	GCTNAGC	1 cut(s)	179
Bsp68I	TCGCGA	1 cut(s)	132
BspACI	CCGC	5 cut(s)	34, 52, 145, 193, 219
BspFNI	CGCG	1 cut(s)	132
BspMI	ACCTGC	1 cut(s)	161
BspPI	GGATC	1 cut(s)	62
BspTNI	GGTCTC	1 cut(s)	147
BssMI	GATC	4 cut(s)	8, 15, 54, 197
BssNI	GRCGYC	1 cut(s)	227
Bst6I	CTCTTC	1 cut(s)	82
BstACI	GRCGYC	1 cut(s)	227
BstDEI	CTNAG	1 cut(s)	179
BstF5I	GGATG	1 cut(s)	27
BstFNI	CGCG	1 cut(s)	132
BstHHI	GCGC	1 cut(s)	185
BstKTI	GATC	4 cut(s)	11, 18, 57, 200
BstMAI	GTCTC	3 cut(s)	142, 147, 217
BstMBI	GATC	4 cut(s)	8, 15, 54, 197
BstMCI	CGRYCG	1 cut(s)	11
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstUI	CGCG	1 cut(s)	132
BstV2I	GAAGAC	1 cut(s)	118
BtgZI	GCGATG	1 cut(s)	113
BtsCI	GGATG	1 cut(s)	27
BtuMI	TCGCGA	1 cut(s)	132
BveI	ACCTGC	1 cut(s)	161
CfoI	GCGC	1 cut(s)	185
CseI	GACGC	1 cut(s)	216
Csp6I	GTAC	1 cut(s)	78
CviJI	RGCY	3 cut(s)	64, 139, 205
CviKI_1	RGCY	3 cut(s)	64, 139, 205
CviQI	GTAC	1 cut(s)	78
DdeI	CTNAG	1 cut(s)	179
DpnI	GATC	4 cut(s)	10, 17, 56, 199
DpnII	GATC	4 cut(s)	8, 15, 54, 197
Eam1104I	CTCTTC	1 cut(s)	82
EarI	CTCTTC	1 cut(s)	82
EciI	GGCGGA	1 cut(s)	67
Eco31I	GGTCTC	1 cut(s)	147
Esp3I	CGTCTC	2 cut(s)	142, 217
FaiI	YATR	1 cut(s)	143
Fnu4HI	GCNGC	1 cut(s)	219
FokI	GGATG	1 cut(s)	14
Fsp4HI	GCNGC	1 cut(s)	219
FspBI	CTAG	1 cut(s)	65
GlaI	GCGC	1 cut(s)	184
GluI	GCNGC	1 cut(s)	219
HapII	CCGG	1 cut(s)	31
HgaI	GACGC	1 cut(s)	216
HhaI	GCGC	1 cut(s)	185
Hin1I	GRCGYC	1 cut(s)	227
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
HindIII	AAGCTT	1 cut(s)	137
HinfI	GANTC	2 cut(s)	117, 161
HpaII	CCGG	1 cut(s)	31
Hpy188I	TCNGA	1 cut(s)	41
Hpy188III	TCNNGA	3 cut(s)	58, 108, 131
Hpy99I	CGWCG	1 cut(s)	232
HpyCH4IV	ACGT	1 cut(s)	210
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
HpyF3I	CTNAG	1 cut(s)	179
HpySE526I	ACGT	1 cut(s)	210
Hsp92I	GRCGYC	1 cut(s)	227
HspAI	GCGC	1 cut(s)	183
Kzo9I	GATC	4 cut(s)	8, 15, 54, 197
LpnPI	CCDG	2 cut(s)	44, 156
LweI	GCATC	2 cut(s)	36, 136
MaeI	CTAG	1 cut(s)	65
MaeII	ACGT	1 cut(s)	210
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	4 cut(s)	10, 17, 56, 199
MboI	GATC	4 cut(s)	8, 15, 54, 197
MboII	GAAGA	2 cut(s)	99, 123
MnlI	CCTC	1 cut(s)	68
MspI	CCGG	1 cut(s)	31
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	1 cut(s)	224
NdeII	GATC	4 cut(s)	8, 15, 54, 197
NruI	TCGCGA	1 cut(s)	132
PfeI	GAWTC	2 cut(s)	117, 161
PkrI	GCNGC	1 cut(s)	220
Ple19I	CGATCG	1 cut(s)	11
PvuI	CGATCG	1 cut(s)	11
RruI	TCGCGA	1 cut(s)	132
RsaI	GTAC	1 cut(s)	79
RsaNI	GTAC	1 cut(s)	78
SatI	GCNGC	1 cut(s)	219
Sau3AI	GATC	4 cut(s)	8, 15, 54, 197
SetI	ASST	5 cut(s)	66, 79, 141, 175, 213
SfaNI	GCATC	2 cut(s)	36, 136
SgeI	CNNG	9 cut(s)	15, 43, 70, 77, 120, 143, 164, 170, 183
SsiI	CCGC	5 cut(s)	34, 52, 145, 193, 219
SspMI	CTAG	1 cut(s)	65
TaiI	ACGT	1 cut(s)	213
TaqI	TCGA	3 cut(s)	7, 107, 200
TauI	GCSGC	1 cut(s)	221
TfiI	GAWTC	2 cut(s)	117, 161
TspDTI	ATGAA	1 cut(s)	35
XspI	CTAG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.