Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002665

Physical Location & Seq

Genomic Coordinates Forward (+)

12664253 .. 12664931

Gene Structure 679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032258

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGATTATTGTACCCGCCAACACGAGAGTTCTGGTGGCTCCGTTCTACGACTCACTGAACTCGGACGACTCAACCGCCTTCAAATCTGATGCTGCGGTCAACTTCCTCAATGACCTCTACTTGTCCGACGCAGACGGAGATGGAGAGACAACTGAGGTCAGCAGAGAGGAAGCCGAGGCTGCTTCGTGGCTGCTCCCAGATCCTACAGATCTGAACTTGGGGCAGTACATGTTCTCCAACATGGATCCTTATTTGGATCTGGATTACGGGGCAGTGGATCCGAAAGCTCCAGCTCAGGAGGAGCAGAACAATAGCGGTACTGACGGAGTGGTCCCTGTGCAAAGCAAGACTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009889 GO:0009909 GO:0009987 GO:0010017 GO:0010099 GO:0010114 GO:0010161 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

119

Amino Acids

12.77

Weight (kDa)

4.05

Isoelectric Point (pI)

43.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24930
fragaria_vesca	FvH4_2g41420 FvH4_2g41420
malus_domestica	MD08G1049600.v1.1 MD15G1045000.v1.1
prunus_persica	Prupe.1G019200_v2.0.a1 Prupe.1G398700_v2.0.a1 Prupe.1G398700_v2.0.a1
pyrus_communis	pycom01g05670 pycom08g04150 pycom15g04180
rosa_chinensis	RchiOBHm_Chr3g0493071 RchiOBHm_Chr4g0429731 RchiOBHm_Chr4g0429741 RchiOBHm_Chr5g0033381 RchiOBHm_Chr5g0037591 RchiOBHm_Chr5g0068911 RchiOBHm_Chr5g0068921 RchiOBHm_Chr6g0299051
rosa_laevigata	RLG00000011466 RLG00000027505 RLG00000031917 RLG00000032258
rosa_multiflora	Rmu_co8169200.1_g000001 Rmu_co8181194.1_g000001 Rmu_sc0000981.1_g000006
rosa_roxburghii	Rroxscaffold_7G00169050
rosa_rugosa	Rorug06G0219600 Rorug06G0284400
rosa_samantha	Rh3AG308000 Rh3CG322500 Rh3DG321400 Rh5AG231500 Rh5AG254900 Rh6AG395900 Rh6BG404500 Rh6CG410500 Rh6DG397100
rosa_wichuraiana	Rw4G030090 Rw6G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	329
AciI	CCGC	4 cut(s)	15, 75, 95, 315
AclWI	GGATC	6 cut(s)	194, 239, 252, 264, 272, 285
AfaI	GTAC	3 cut(s)	12, 227, 319
AflIII	ACRYGT	1 cut(s)	228
AgsI	TTSAA	1 cut(s)	82
AluBI	AGCT	2 cut(s)	287, 293
AluI	AGCT	2 cut(s)	287, 293
Alw26I	GTCTC	1 cut(s)	140
AlwI	GGATC	6 cut(s)	194, 239, 252, 264, 272, 285
ApeKI	GCWGC	3 cut(s)	92, 179, 190
AspS9I	GGNCC	1 cut(s)	331
AvaII	GGWCC	1 cut(s)	331
BamHI	GGATCC	2 cut(s)	244, 277
BauI	CACGAG	1 cut(s)	22
BbvI	GCAGC	3 cut(s)	79, 166, 177
BccI	CCATC	1 cut(s)	134
BcoDI	GTCTC	1 cut(s)	140
BfaI	CTAG	1 cut(s)	355
BfmI	CTRYAG	1 cut(s)	204
BglII	AGATCT	1 cut(s)	208
BisI	GCNGC	3 cut(s)	93, 180, 191
BlsI	GCNGC	3 cut(s)	94, 181, 192
Bme18I	GGWCC	1 cut(s)	331
BmgT120I	GGNCC	1 cut(s)	331
BmiI	GGNNCC	4 cut(s)	39, 246, 279, 333
BmsI	GCATC	1 cut(s)	79
BpmI	CTGGAG	1 cut(s)	273
Bpu10I	CCTNAGC	1 cut(s)	294
BsaJI	CCNNGG	1 cut(s)	174
BsaXI	ACNNNNNCTCC	2 cut(s)	218, 248
BseDI	CCNNGG	1 cut(s)	174
BseMII	CTCAG	2 cut(s)	144, 308
BseRI	GAGGAG	1 cut(s)	314
BseXI	GCAGC	3 cut(s)	79, 166, 177
BslFI	GGGAC	1 cut(s)	317
BsmAI	GTCTC	1 cut(s)	140
BsmFI	GGGAC	1 cut(s)	317
Bsp143I	GATC	5 cut(s)	199, 208, 244, 256, 277
BspACI	CCGC	4 cut(s)	15, 75, 95, 315
BspCNI	CTCAG	2 cut(s)	145, 307
BspLI	GGNNCC	4 cut(s)	39, 246, 279, 333
BspPI	GGATC	6 cut(s)	194, 239, 252, 264, 272, 285
BssECI	CCNNGG	1 cut(s)	174
BssMI	GATC	5 cut(s)	199, 208, 244, 256, 277
BssSI	CACGAG	1 cut(s)	22
Bst2BI	CACGAG	1 cut(s)	22
Bst4CI	ACNGT	1 cut(s)	352
BstDEI	CTNAG	2 cut(s)	153, 294
BstKTI	GATC	5 cut(s)	202, 211, 247, 259, 280
BstMAI	GTCTC	1 cut(s)	140
BstMBI	GATC	5 cut(s)	199, 208, 244, 256, 277
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstNSI	RCATGY	1 cut(s)	232
BstSFI	CTRYAG	1 cut(s)	204
BstV1I	GCAGC	3 cut(s)	79, 166, 177
BstX2I	RGATCY	5 cut(s)	199, 208, 244, 256, 277
BstYI	RGATCY	5 cut(s)	199, 208, 244, 256, 277
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	2 cut(s)	53, 279
Cfr13I	GGNCC	1 cut(s)	331
CseI	GACGC	1 cut(s)	137
Csp6I	GTAC	3 cut(s)	11, 226, 318
CviAII	CATG	2 cut(s)	229, 241
CviJI	RGCY	6 cut(s)	38, 173, 179, 190, 287, 293
CviKI_1	RGCY	6 cut(s)	38, 173, 179, 190, 287, 293
CviQI	GTAC	3 cut(s)	11, 226, 318
DdeI	CTNAG	2 cut(s)	153, 294
DpnI	GATC	5 cut(s)	201, 210, 246, 258, 279
DpnII	GATC	5 cut(s)	199, 208, 244, 256, 277
DrdI	GACNNNNNNGTC	1 cut(s)	329
DseDI	GACNNNNNNGTC	1 cut(s)	329
Eco47I	GGWCC	1 cut(s)	331
FaeI	CATG	2 cut(s)	232, 244
FaiI	YATR	2 cut(s)	230, 242
FaqI	GGGAC	1 cut(s)	317
FatI	CATG	2 cut(s)	228, 240
FauI	CCCGC	1 cut(s)	22
Fnu4HI	GCNGC	3 cut(s)	93, 180, 191
Fsp4HI	GCNGC	3 cut(s)	93, 180, 191
FspBI	CTAG	1 cut(s)	355
GluI	GCNGC	3 cut(s)	93, 180, 191
GsuI	CTGGAG	1 cut(s)	273
HgaI	GACGC	1 cut(s)	137
Hin1II	CATG	2 cut(s)	232, 244
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	2 cut(s)	50, 68
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	5 cut(s)	64, 88, 127, 213, 282
Hpy188III	TCNNGA	2 cut(s)	260, 296
Hpy8I	GTNNAC	1 cut(s)	100
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	1 cut(s)	88
HpyCH4III	ACNGT	1 cut(s)	352
HpyCH4V	TGCA	1 cut(s)	340
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
HpyF3I	CTNAG	2 cut(s)	153, 294
Hsp92II	CATG	2 cut(s)	232, 244
Kzo9I	GATC	5 cut(s)	199, 208, 244, 256, 277
LmnI	GCTCC	4 cut(s)	43, 198, 292, 301
LpnPI	CCDG	6 cut(s)	17, 210, 245, 281, 303, 348
Lsp1109I	GCAGC	3 cut(s)	79, 166, 177
LweI	GCATC	1 cut(s)	79
MaeI	CTAG	1 cut(s)	355
MalI	GATC	5 cut(s)	201, 210, 246, 258, 279
MboI	GATC	5 cut(s)	199, 208, 244, 256, 277
MflI	RGATCY	5 cut(s)	199, 208, 244, 256, 277
MlyI	GAGTC	2 cut(s)	44, 62
MmeI	TCCRAC	2 cut(s)	150, 261
MnlI	CCTC	6 cut(s)	116, 125, 148, 160, 169, 292
MwoI	GCNNNNNNNGC	1 cut(s)	179
NdeII	GATC	5 cut(s)	199, 208, 244, 256, 277
NlaIII	CATG	2 cut(s)	232, 244
NlaIV	GGNNCC	4 cut(s)	39, 246, 279, 333
NmeAIII	GCCGAG	1 cut(s)	199
NspI	RCATGY	1 cut(s)	232
PciI	ACATGT	1 cut(s)	228
PkrI	GCNGC	3 cut(s)	94, 181, 192
PleI	GAGTC	2 cut(s)	44, 62
PpsI	GAGTC	2 cut(s)	44, 62
PscI	ACATGT	1 cut(s)	228
PspN4I	GGNNCC	4 cut(s)	39, 246, 279, 333
PspPI	GGNCC	1 cut(s)	331
PsuI	RGATCY	5 cut(s)	199, 208, 244, 256, 277
RsaI	GTAC	3 cut(s)	12, 227, 319
RsaNI	GTAC	3 cut(s)	11, 226, 318
SatI	GCNGC	3 cut(s)	93, 180, 191
Sau3AI	GATC	5 cut(s)	199, 208, 244, 256, 277
Sau96I	GGNCC	1 cut(s)	331
SchI	GAGTC	2 cut(s)	44, 62
SetI	ASST	4 cut(s)	117, 159, 289, 295
SfaNI	GCATC	1 cut(s)	79
SfcI	CTRYAG	1 cut(s)	204
SinI	GGWCC	1 cut(s)	331
SsiI	CCGC	4 cut(s)	15, 75, 95, 315
SspMI	CTAG	1 cut(s)	355
TaaI	ACNGT	1 cut(s)	352
TatI	WGTACW	1 cut(s)	225
TscAI	CASTG	2 cut(s)	60, 279
TseI	GCWGC	3 cut(s)	92, 179, 190
TspGWI	ACGGA	3 cut(s)	30, 150, 339
TspRI	CASTG	2 cut(s)	60, 279
VpaK11BI	GGWCC	1 cut(s)	331
XceI	RCATGY	1 cut(s)	232
XspI	CTAG	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.